Wall clock time and date at job start Mon Mar 30 2020 07:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31774 * 122.75406 * 2 1 4 4 C 1.29024 * 117.13006 * 180.02562 * 3 2 1 5 5 S 1.70983 * 110.16363 * 359.72688 * 4 3 2 6 6 C 1.33638 * 122.74613 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.03884 * 359.97438 * 6 2 1 8 8 H 1.09002 * 109.47152 * 345.00286 * 7 6 2 9 9 C 1.53000 * 109.46912 * 105.00514 * 7 6 2 10 10 N 1.46896 * 109.46997 * 225.00224 * 7 6 2 11 11 C 1.46903 * 111.00095 * 56.04979 * 10 7 6 12 12 C 1.46903 * 110.99970 * 180.02562 * 10 7 6 13 13 C 1.53001 * 109.47156 * 170.00293 * 12 10 7 14 14 C 1.50706 * 109.46975 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99826 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00164 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47138 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47225 * 119.99842 * 18 16 14 21 21 H 1.48500 * 109.46906 * 239.99874 * 18 16 14 22 22 H 1.08999 * 109.47051 * 270.00099 * 1 2 3 23 23 H 1.09001 * 109.46824 * 29.99572 * 1 2 3 24 24 H 1.08991 * 109.47535 * 149.99431 * 1 2 3 25 25 H 1.08001 * 124.92406 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 9 7 6 27 27 H 1.08992 * 109.47399 * 59.99914 * 9 7 6 28 28 H 1.09004 * 109.46724 * 180.02562 * 9 7 6 29 29 H 1.08996 * 109.47275 * 59.99485 * 11 10 7 30 30 H 1.09005 * 109.46961 * 179.97438 * 11 10 7 31 31 H 1.09006 * 109.46779 * 299.99689 * 11 10 7 32 32 H 1.09006 * 109.46970 * 290.00119 * 12 10 7 33 33 H 1.08999 * 109.47221 * 49.99782 * 12 10 7 34 34 H 1.08996 * 109.46950 * 299.99743 * 13 12 10 35 35 H 1.08993 * 109.47357 * 60.00339 * 13 12 10 36 36 H 0.97002 * 120.00082 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1082 0.0000 4 6 3.5040 0.9818 -0.0005 5 16 3.9332 -0.6733 0.0066 6 6 2.2299 -1.1240 -0.0005 7 6 1.6845 -2.5289 -0.0006 8 1 0.6277 -2.5085 0.2657 9 6 1.8476 -3.1391 -1.3941 10 7 2.4206 -3.3399 0.9783 11 6 2.3644 -2.7318 2.3144 12 6 1.9155 -4.7191 1.0055 13 6 2.8552 -5.5900 1.8418 14 6 2.3373 -7.0050 1.8692 15 1 1.4286 -7.2577 1.3431 16 6 3.0236 -7.9769 2.5658 17 7 4.1304 -7.6693 3.2059 18 14 2.3820 -9.7310 2.5991 19 1 1.1293 -9.8151 1.8060 20 1 3.3998 -10.6416 2.0157 21 1 2.1065 -10.1307 4.0025 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8898 -0.5139 25 1 4.2061 1.8024 -0.0010 26 1 1.3014 -2.5374 -2.1205 27 1 2.9043 -3.1596 -1.6604 28 1 1.4528 -4.1551 -1.3943 29 1 1.3256 -2.6546 2.6351 30 1 2.9169 -3.3527 3.0197 31 1 2.8090 -1.7371 2.2798 32 1 0.9188 -4.7324 1.4469 33 1 1.8677 -5.1087 -0.0113 34 1 3.8517 -5.5768 1.4005 35 1 2.9029 -5.2005 2.8586 36 1 4.6130 -8.3530 3.6964 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259819193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:12 Heat of formation + Delta-G solvation = 20.493070 kcal Electronic energy + Delta-G solvation = -16747.440036 eV Core-core repulsion = 14164.489582 eV Total energy + Delta-G solvation = -2582.950454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98331 -39.04141 -35.42152 -33.80188 -31.82872 -31.08511 -28.57171 -27.00213 -25.82369 -25.50829 -23.12568 -21.32929 -19.80448 -18.96103 -18.40853 -17.01280 -16.77405 -16.37248 -16.02128 -15.43505 -15.09016 -14.59758 -14.40208 -14.18421 -14.07772 -13.48729 -13.33733 -13.32647 -13.15580 -12.93726 -12.68410 -12.54507 -12.43910 -12.26778 -12.06136 -11.65384 -11.34712 -11.21085 -10.54130 -10.52227 -10.09293 -9.62629 -9.25265 -8.18385 -6.29232 -0.20165 0.50896 0.95404 1.41487 1.41856 1.54825 1.81976 2.41390 2.99746 3.15663 3.36804 3.72889 4.13038 4.22723 4.24286 4.33785 4.37436 4.46418 4.63017 4.71516 4.74538 4.78885 4.83183 4.94590 4.98347 4.98500 5.09722 5.29155 5.35795 5.49337 5.66807 5.80598 6.07860 6.21783 6.32480 6.77831 6.88518 7.40028 8.93955 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.040134 B = 0.004622 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.488297 B = 6055.957300 C = 6317.184629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.047 3.953 3 N -0.495 5.495 4 C 0.009 3.991 5 S 0.154 5.846 6 C -0.217 4.217 7 C 0.155 3.845 8 H 0.065 0.935 9 C -0.140 4.140 10 N -0.545 5.545 11 C 0.033 3.967 12 C 0.077 3.923 13 C 0.037 3.963 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.280 1.280 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.076 0.924 34 H -0.008 1.008 35 H -0.007 1.007 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 15.586 -8.001 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 N -0.209 5.209 4 C -0.288 4.288 5 S 0.408 5.592 6 C -0.339 4.339 7 C 0.045 3.955 8 H 0.083 0.917 9 C -0.198 4.198 10 N -0.269 5.269 11 C -0.116 4.116 12 C -0.050 4.050 13 C -0.001 4.001 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.206 1.206 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.245 0.755 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.148 15.545 -8.048 17.786 hybrid contribution -1.459 -0.862 0.704 1.835 sum -4.607 14.683 -7.345 17.051 Atomic orbital electron populations 1.20418 0.86040 1.03933 1.03289 1.20534 0.99179 0.86013 1.02846 1.66261 1.06031 1.31730 1.16918 1.28895 0.95334 1.01498 1.03038 1.84415 1.06562 1.01860 1.66340 1.25665 0.96125 0.99532 1.12581 1.20019 0.95265 0.86084 0.94106 0.91701 1.21909 1.02673 1.01162 0.94008 1.62123 1.55519 1.02406 1.06895 1.22295 0.99600 0.99342 0.90326 1.22080 0.95819 0.86550 1.00576 1.18917 0.94249 0.93121 0.93773 1.21651 1.09623 0.95124 1.31544 0.92044 1.25928 0.95040 1.03652 0.94940 1.70117 1.17862 1.35212 1.34051 0.85416 0.78675 0.79082 0.77958 1.18430 1.20464 1.20557 0.90530 0.90030 0.89820 0.75531 0.90247 0.92540 0.91544 0.95614 0.92646 0.91442 0.95937 0.90563 0.98941 0.98841 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 9.81 71.24 0.70 -0.83 16 2 C 0.05 1.18 6.74 41.52 0.28 1.45 16 3 N -0.49 -12.57 10.53 -191.55 -2.02 -14.58 16 4 C 0.01 0.20 12.23 130.65 1.60 1.80 16 5 S 0.15 3.75 22.40 -56.49 -1.27 2.48 16 6 C -0.22 -5.75 3.96 24.64 0.10 -5.65 16 7 C 0.16 4.38 2.24 44.17 0.10 4.48 16 8 H 0.07 1.73 6.77 -2.39 -0.02 1.72 16 9 C -0.14 -3.59 8.97 71.98 0.65 -2.94 16 10 N -0.54 -19.26 4.52 -901.43 -4.08 -23.34 16 11 C 0.03 1.13 9.06 127.69 1.16 2.29 16 12 C 0.08 3.15 4.71 86.30 0.41 3.55 16 13 C 0.04 1.94 4.90 29.85 0.15 2.09 16 14 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 16 C 0.00 0.13 5.46 84.65 0.46 0.59 16 17 N -0.93 -56.81 13.29 21.44 0.28 -56.53 16 18 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.46 7.03 -2.39 -0.02 1.44 16 25 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.76 6.20 -2.39 -0.01 1.74 16 29 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 2.19 6.30 -2.38 -0.02 2.18 16 31 H 0.07 2.13 6.35 -2.38 -0.02 2.11 16 32 H 0.02 0.91 8.12 -2.38 -0.02 0.89 16 33 H 0.08 3.00 5.83 -2.39 -0.01 2.98 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H -0.01 -0.38 6.47 -2.39 -0.02 -0.40 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -65.80 304.81 1.84 -63.97 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.06 Total: 5.44 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 5.82 Total: -23.43 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -5.81 Total: -94.45 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.27 Total: 2.48 kcal Total: -65.80 1.84 -63.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.462 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds