Wall clock time and date at job start Mon Mar 30 2020 07:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31774 * 122.75291 * 2 1 4 4 C 1.29021 * 117.12733 * 180.33688 * 3 2 1 5 5 S 1.70979 * 110.16761 * 359.71246 * 4 3 2 6 6 C 1.33641 * 122.74523 * 179.79736 * 2 1 3 7 7 C 1.50698 * 126.04145 * 359.97438 * 6 2 1 8 8 H 1.09001 * 109.46968 * 18.78591 * 7 6 2 9 9 C 1.52996 * 109.47090 * 258.78711 * 7 6 2 10 10 N 1.46903 * 109.46946 * 138.78157 * 7 6 2 11 11 C 1.46895 * 110.99713 * 73.91148 * 10 7 6 12 12 C 1.46906 * 110.99682 * 197.86095 * 10 7 6 13 13 H 1.09000 * 109.47186 * 300.00413 * 12 10 7 14 14 C 1.52998 * 109.46922 * 60.00580 * 12 10 7 15 15 C 1.50701 * 109.46901 * 180.02562 * 12 10 7 16 16 H 1.08003 * 120.00067 * 334.69004 * 15 12 10 17 17 C 1.37875 * 120.00058 * 154.68738 * 15 12 10 18 18 N 1.31517 * 119.99817 * 5.51749 * 17 15 12 19 19 Si 1.86798 * 120.00234 * 185.51479 * 17 15 12 20 20 H 1.48500 * 109.46943 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47050 * 300.00657 * 19 17 15 22 22 H 1.48499 * 109.46652 * 60.00329 * 19 17 15 23 23 H 1.09005 * 109.47405 * 270.20439 * 1 2 3 24 24 H 1.09007 * 109.47235 * 30.20017 * 1 2 3 25 25 H 1.08999 * 109.47779 * 150.20352 * 1 2 3 26 26 H 1.08001 * 124.92053 * 179.75507 * 4 3 2 27 27 H 1.08994 * 109.47493 * 59.99784 * 9 7 6 28 28 H 1.09001 * 109.46816 * 179.97438 * 9 7 6 29 29 H 1.09001 * 109.46962 * 299.99256 * 9 7 6 30 30 H 1.08997 * 109.47362 * 191.12555 * 11 10 7 31 31 H 1.09004 * 109.47428 * 311.13132 * 11 10 7 32 32 H 1.08999 * 109.47350 * 71.12880 * 11 10 7 33 33 H 1.09007 * 109.46957 * 292.84730 * 14 12 10 34 34 H 1.08992 * 109.47540 * 52.85118 * 14 12 10 35 35 H 1.09000 * 109.47002 * 172.85266 * 14 12 10 36 36 H 0.97000 * 120.00364 * 355.03564 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1082 0.0000 4 6 3.5039 0.9818 -0.0068 5 16 3.9332 -0.6732 -0.0061 6 6 2.2298 -1.1240 0.0040 7 6 1.6846 -2.5289 0.0095 8 1 0.6460 -2.5168 -0.3211 9 6 1.7620 -3.1004 1.4266 10 7 2.4783 -3.3658 -0.9003 11 6 3.7909 -3.6768 -0.3189 12 6 1.7538 -4.5944 -1.2521 13 1 1.5437 -5.1641 -0.3469 14 6 0.4380 -4.2305 -1.9428 15 6 2.5976 -5.4257 -2.1838 16 1 3.3463 -4.9522 -2.8017 17 6 2.4138 -6.7906 -2.2475 18 7 1.4318 -7.3538 -1.5781 19 14 3.5595 -7.8400 -3.2845 20 1 3.1522 -9.2646 -3.1846 21 1 3.4857 -7.4016 -4.7014 22 1 4.9520 -7.6882 -2.7912 23 1 -0.3634 0.0037 1.0277 24 1 -0.3634 0.8882 -0.5170 25 1 -0.3634 -0.8918 -0.5106 26 1 4.2059 1.8025 -0.0114 27 1 1.1732 -2.4795 2.1015 28 1 1.3672 -4.1164 1.4306 29 1 2.8007 -3.1126 1.7571 30 1 4.4291 -4.1241 -1.0809 31 1 4.2520 -2.7601 0.0488 32 1 3.6658 -4.3771 0.5070 33 1 -0.2235 -3.7398 -1.2287 34 1 0.6388 -3.5559 -2.7749 35 1 -0.0389 -5.1366 -2.3165 36 1 0.8816 -6.8204 -0.9834 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:51 Heat of formation + Delta-G solvation = 25.610597 kcal Electronic energy + Delta-G solvation = -17401.520209 eV Core-core repulsion = 14818.791667 eV Total energy + Delta-G solvation = -2582.728542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94221 -39.45996 -35.59114 -33.28911 -31.67929 -30.67383 -28.26620 -27.05994 -26.31702 -25.51551 -23.70529 -21.28885 -19.72928 -18.76154 -18.69438 -17.20540 -16.68793 -16.00112 -15.66911 -15.48154 -14.99491 -14.87813 -14.41610 -14.18623 -13.64713 -13.58874 -13.43824 -13.38823 -13.04899 -12.89513 -12.76133 -12.60305 -12.48362 -12.17047 -11.94130 -11.83475 -11.68379 -10.71343 -10.41547 -10.35666 -10.14717 -9.62674 -9.06474 -8.56911 -6.28812 -0.15892 0.50219 0.90863 1.55144 1.61353 1.80798 1.85553 2.57311 3.11914 3.28212 3.39620 3.76243 4.02321 4.18057 4.32860 4.35239 4.38704 4.53386 4.61603 4.64643 4.71141 4.74836 4.77738 4.88450 4.89924 4.99262 5.08583 5.13179 5.20116 5.37866 5.49974 5.95131 6.00699 6.40935 6.49868 6.73674 6.80551 7.50089 8.80688 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.032743 B = 0.006303 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.938111 B = 4441.176091 C = 4834.669812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.041 3.959 3 N -0.494 5.494 4 C -0.002 4.002 5 S 0.150 5.850 6 C -0.207 4.207 7 C 0.144 3.856 8 H 0.099 0.901 9 C -0.169 4.169 10 N -0.534 5.534 11 C 0.050 3.950 12 C 0.200 3.800 13 H -0.018 1.018 14 C -0.121 4.121 15 C -0.588 4.588 16 H 0.047 0.953 17 C -0.026 4.026 18 N -0.937 5.937 19 Si 1.110 2.890 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.272 1.272 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.227 0.773 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.015 0.985 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.031 0.969 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 13.427 5.307 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 N -0.208 5.208 4 C -0.299 4.299 5 S 0.404 5.596 6 C -0.329 4.329 7 C 0.034 3.966 8 H 0.117 0.883 9 C -0.229 4.229 10 N -0.258 5.258 11 C -0.099 4.099 12 C 0.094 3.906 13 H 0.000 1.000 14 C -0.180 4.180 15 C -0.627 4.627 16 H 0.065 0.935 17 C -0.225 4.225 18 N -0.575 5.575 19 Si 0.933 3.067 20 H -0.213 1.213 21 H -0.200 1.200 22 H -0.197 1.197 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.244 0.756 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.184 12.214 4.343 13.621 hybrid contribution -1.359 0.937 1.215 2.049 sum 2.825 13.151 5.558 14.554 Atomic orbital electron populations 1.20401 0.86220 1.03404 1.03533 1.20454 0.99151 0.86132 1.03329 1.66264 1.06150 1.31645 1.16777 1.29071 0.95380 1.02446 1.03025 1.84029 1.06602 1.01603 1.67351 1.25726 0.96071 0.99602 1.11453 1.20181 0.97981 0.86645 0.91833 0.88317 1.22354 1.02625 1.00860 0.97015 1.62321 1.03535 1.19390 1.40510 1.22207 0.91664 0.98135 0.97910 1.19267 0.91829 0.86015 0.93532 1.00000 1.21778 0.97169 0.99283 0.99734 1.22088 1.21599 0.93906 1.25081 0.93517 1.27052 0.98352 0.97703 0.99394 1.70922 1.18284 1.40535 1.27797 0.83005 0.74258 0.74408 0.75065 1.21255 1.20024 1.19701 0.89563 0.90299 0.90815 0.75634 0.90393 0.93420 0.92167 0.92073 0.91531 0.96660 0.93763 0.93630 0.95030 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 10.04 71.24 0.71 -1.13 16 2 C 0.04 1.21 6.74 41.52 0.28 1.49 16 3 N -0.49 -14.25 10.53 -191.56 -2.02 -16.26 16 4 C 0.00 -0.06 12.23 130.66 1.60 1.54 16 5 S 0.15 3.98 19.67 -56.49 -1.11 2.86 16 6 C -0.21 -6.42 5.49 24.64 0.14 -6.29 16 7 C 0.14 4.94 2.42 44.17 0.11 5.05 16 8 H 0.10 3.39 4.04 -2.39 -0.01 3.38 16 9 C -0.17 -5.32 8.29 71.98 0.60 -4.73 16 10 N -0.53 -21.95 4.49 -880.60 -3.96 -25.91 16 11 C 0.05 1.93 7.62 127.69 0.97 2.90 16 12 C 0.20 9.67 1.55 44.17 0.07 9.74 16 13 H -0.02 -0.93 5.78 -2.39 -0.01 -0.94 16 14 C -0.12 -5.47 8.68 71.98 0.63 -4.84 16 15 C -0.59 -31.80 7.20 25.60 0.18 -31.62 16 16 H 0.05 2.58 7.50 -2.91 -0.02 2.55 16 17 C -0.03 -1.46 5.45 84.65 0.46 -1.00 16 18 N -0.94 -55.38 13.63 21.45 0.29 -55.09 16 19 Si 1.11 49.35 29.91 68.60 2.05 51.40 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.07 1.79 6.61 -2.39 -0.02 1.77 16 26 H 0.23 3.45 8.06 -2.91 -0.02 3.43 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.66 7.04 -2.39 -0.02 1.65 16 29 H 0.06 1.85 6.54 -2.39 -0.02 1.83 16 30 H 0.06 2.57 7.06 -2.39 -0.02 2.55 16 31 H 0.07 2.18 4.20 -16.16 -0.07 2.11 16 32 H 0.01 0.60 6.93 -2.39 -0.02 0.59 16 33 H 0.04 1.70 6.44 -2.38 -0.02 1.69 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.03 1.53 7.93 -2.39 -0.02 1.51 16 36 H 0.26 15.32 6.47 -92.71 -0.60 14.72 16 Total: -1.00 -63.23 292.42 2.19 -61.04 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.19 Total: 10.85 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 5.74 Total: -28.89 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -5.68 Total: -97.26 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.11 Total: 2.86 kcal Total: -63.23 2.19 -61.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.649 kcal (2) G-P(sol) polarization free energy of solvation -63.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds