Wall clock time and date at job start Mon Mar 30 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46925 * 2 1 4 4 C 1.50695 * 109.46766 * 119.99568 * 2 1 3 5 5 H 1.08002 * 120.00074 * 120.00512 * 4 2 1 6 6 C 1.37880 * 120.00561 * 299.99820 * 4 2 1 7 7 N 1.31515 * 120.00472 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99423 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47185 * 90.00265 * 8 6 4 10 10 H 1.48503 * 109.46752 * 209.99603 * 8 6 4 11 11 H 1.48497 * 109.47421 * 329.99817 * 8 6 4 12 12 C 1.50699 * 109.47175 * 239.99750 * 2 1 3 13 13 N 1.34333 * 125.96481 * 299.97857 * 12 2 1 14 14 C 1.29996 * 109.24347 * 180.02562 * 13 12 2 15 15 N 1.35605 * 108.63725 * 359.97438 * 14 13 12 16 16 C 1.34979 * 125.96626 * 119.99731 * 12 2 1 17 17 Cl 1.73593 * 126.66412 * 359.97234 * 16 12 2 18 18 C 1.46475 * 124.83005 * 179.90197 * 15 14 13 19 19 C 1.53260 * 108.79055 * 342.90835 * 18 15 14 20 20 C 1.53153 * 109.49995 * 50.39635 * 19 18 15 21 21 C 1.51051 * 127.44582 * 180.10561 * 14 13 12 22 22 H 1.08996 * 109.46990 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.46940 * 60.00179 * 1 2 3 24 24 H 1.08995 * 109.47095 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99947 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.58116 * 223.12246 * 18 15 14 27 27 H 1.08998 * 109.58383 * 102.70480 * 18 15 14 28 28 H 1.09007 * 109.46973 * 290.38947 * 19 18 15 29 29 H 1.09000 * 109.46300 * 170.40140 * 19 18 15 30 30 H 1.08995 * 109.50988 * 170.54663 * 20 19 18 31 31 H 1.09003 * 109.50404 * 50.41607 * 20 19 18 32 32 H 1.09002 * 109.71670 * 44.28716 * 21 14 13 33 33 H 1.09001 * 109.71531 * 283.68732 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5567 8 14 0.6248 1.2792 2.6540 9 1 -0.8028 0.8729 2.6997 10 1 0.9759 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 6 2.0324 -0.7105 -1.2304 13 7 1.7832 -1.9885 -1.5604 14 6 2.3748 -2.2639 -2.6847 15 7 3.0283 -1.1557 -3.1134 16 6 2.8116 -0.1738 -2.1931 17 17 3.4193 1.4514 -2.2487 18 6 3.8152 -1.0728 -4.3460 19 6 4.1327 -2.4934 -4.8255 20 6 2.8439 -3.3199 -4.8642 21 6 2.3648 -3.5776 -3.4301 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.9033 -0.5276 4.4376 26 1 4.7441 -0.5369 -4.1510 27 1 3.2421 -0.5485 -5.1107 28 1 4.8417 -2.9581 -4.1404 29 1 4.5671 -2.4510 -5.8243 30 1 3.0362 -4.2711 -5.3604 31 1 2.0765 -2.7720 -5.4112 32 1 1.3531 -3.9829 -3.4475 33 1 3.0353 -4.2836 -2.9400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259907223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:06 Heat of formation + Delta-G solvation = 46.007306 kcal Electronic energy + Delta-G solvation = -16913.436945 eV Core-core repulsion = 14193.716070 eV Total energy + Delta-G solvation = -2719.720875 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.91323 -36.82312 -36.21284 -34.14106 -32.87447 -31.29009 -29.06095 -27.81574 -24.92077 -24.17000 -22.20372 -21.88903 -19.14459 -18.88014 -16.80712 -16.35833 -15.92375 -14.79995 -14.41706 -14.19112 -14.07353 -13.94411 -13.69047 -12.75713 -12.66623 -12.19257 -12.02449 -11.50019 -11.34465 -11.18432 -11.15705 -11.03471 -10.96150 -10.79645 -10.37487 -9.92430 -9.50669 -9.13562 -9.10159 -8.85909 -8.41437 -7.49335 -5.91919 -3.88839 2.11069 2.32917 3.25456 3.38665 3.47769 3.50636 3.69631 4.34428 4.48405 4.53773 4.57947 4.62934 5.08009 5.22953 5.29431 5.39467 5.49967 5.59865 5.69421 5.73524 5.81288 5.99853 6.06511 6.49104 6.57240 6.59881 6.85384 7.06695 7.21903 7.43834 7.67954 7.85920 8.62162 8.73438 9.15348 9.69070 11.21691 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.007145 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.290553 B = 3917.987239 C = 4415.935207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.079 3.921 3 H 0.043 0.957 4 C -0.491 4.491 5 H 0.075 0.925 6 C 0.068 3.932 7 N -0.903 5.903 8 Si 0.884 3.116 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.265 1.265 12 C 0.102 3.898 13 N -0.457 5.457 14 C 0.209 3.791 15 N -0.461 5.461 16 C -0.011 4.011 17 Cl -0.022 7.022 18 C 0.104 3.896 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.030 4.030 22 H 0.040 0.960 23 H 0.025 0.975 24 H 0.059 0.941 25 H 0.262 0.738 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -1.301 -19.238 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.059 3.941 3 H 0.061 0.939 4 C -0.530 4.530 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.542 5.542 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.190 1.190 12 C -0.028 4.028 13 N -0.176 5.176 14 C -0.053 4.053 15 N -0.150 5.150 16 C -0.147 4.147 17 Cl 0.006 6.994 18 C -0.018 4.018 19 C -0.171 4.171 20 C -0.162 4.162 21 C -0.068 4.068 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.532 -1.655 -18.717 18.960 hybrid contribution 0.128 1.629 -0.278 1.657 sum 2.660 -0.026 -18.994 19.180 Atomic orbital electron populations 1.22056 0.98121 1.01313 0.98064 1.17790 0.91978 0.95023 0.89274 0.93914 1.20840 1.31363 1.13047 0.87719 0.90641 1.24949 0.95877 0.96625 0.95755 1.69893 1.46111 1.40466 0.97766 0.86903 0.80789 0.84012 0.76834 1.20590 1.22626 1.19036 1.21007 0.96753 0.89555 0.95531 1.70162 1.22729 1.14401 1.10309 1.23185 0.97694 0.90008 0.94396 1.45004 1.40841 1.10307 1.18829 1.21247 1.11403 0.85457 0.96624 1.98318 1.87294 1.15611 1.98163 1.21881 0.95996 0.99093 0.84841 1.21881 0.98836 0.93845 1.02493 1.21667 0.97084 1.00843 0.96587 1.20152 1.03804 0.90108 0.92778 0.94179 0.95556 0.92148 0.92819 0.89597 0.90206 0.90504 0.89558 0.90139 0.91244 0.88674 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.65 37.16 0.32 -2.98 16 2 C 0.08 2.03 2.29 -92.92 -0.21 1.82 16 3 H 0.04 1.10 6.47 -51.93 -0.34 0.76 16 4 C -0.49 -14.69 9.13 -34.44 -0.31 -15.01 16 5 H 0.08 2.50 7.98 -52.49 -0.42 2.08 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -28.70 13.96 55.43 0.77 -27.93 16 8 Si 0.88 22.81 24.37 -169.99 -4.14 18.67 16 9 H -0.28 -7.01 6.87 56.52 0.39 -6.62 16 10 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 11 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 12 C 0.10 2.40 5.55 -82.66 -0.46 1.94 16 13 N -0.46 -10.30 11.24 -6.82 -0.08 -10.37 16 14 C 0.21 3.68 7.65 -155.15 -1.19 2.49 16 15 N -0.46 -7.64 3.14 -110.27 -0.35 -7.98 16 16 C -0.01 -0.21 7.51 -16.72 -0.13 -0.34 16 17 Cl -0.02 -0.38 28.43 -51.86 -1.47 -1.86 16 18 C 0.10 1.17 6.86 -3.92 -0.03 1.14 16 19 C -0.13 -1.11 5.94 -26.52 -0.16 -1.27 16 20 C -0.12 -1.05 5.96 -26.45 -0.16 -1.20 16 21 C -0.03 -0.35 6.33 -27.51 -0.17 -0.53 16 22 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.70 8.12 -51.93 -0.42 0.27 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 280.36 15.07 4.23 4.23 Total: -1.00 -34.36 280.36 -7.96 -42.32 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -4.33 Total: -5.10 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.59 Total: -11.97 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.35 Total: -46.29 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.67 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.47 Total: -1.86 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.36 -7.96 -42.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.328 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds