Wall clock time and date at job start Mon Mar 30 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46925 * 2 1 4 4 C 1.50695 * 109.46766 * 119.99568 * 2 1 3 5 5 H 1.08002 * 120.00074 * 120.00512 * 4 2 1 6 6 C 1.37880 * 120.00561 * 299.99820 * 4 2 1 7 7 N 1.31515 * 120.00472 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99423 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47185 * 90.00265 * 8 6 4 10 10 H 1.48503 * 109.46752 * 209.99603 * 8 6 4 11 11 H 1.48497 * 109.47421 * 329.99817 * 8 6 4 12 12 C 1.50699 * 109.47175 * 239.99750 * 2 1 3 13 13 N 1.34333 * 125.96481 * 299.97857 * 12 2 1 14 14 C 1.29996 * 109.24347 * 180.02562 * 13 12 2 15 15 N 1.35605 * 108.63725 * 359.97438 * 14 13 12 16 16 C 1.34979 * 125.96626 * 119.99731 * 12 2 1 17 17 Cl 1.73593 * 126.66412 * 359.97234 * 16 12 2 18 18 C 1.46475 * 124.83005 * 179.90197 * 15 14 13 19 19 C 1.53260 * 108.79055 * 342.90835 * 18 15 14 20 20 C 1.53153 * 109.49995 * 50.39635 * 19 18 15 21 21 C 1.51051 * 127.44582 * 180.10561 * 14 13 12 22 22 H 1.08996 * 109.46990 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.46940 * 60.00179 * 1 2 3 24 24 H 1.08995 * 109.47095 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99947 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.58116 * 223.12246 * 18 15 14 27 27 H 1.08998 * 109.58383 * 102.70480 * 18 15 14 28 28 H 1.09007 * 109.46973 * 290.38947 * 19 18 15 29 29 H 1.09000 * 109.46300 * 170.40140 * 19 18 15 30 30 H 1.08995 * 109.50988 * 170.54663 * 20 19 18 31 31 H 1.09003 * 109.50404 * 50.41607 * 20 19 18 32 32 H 1.09002 * 109.71670 * 44.28716 * 21 14 13 33 33 H 1.09001 * 109.71531 * 283.68732 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5567 8 14 0.6248 1.2792 2.6540 9 1 -0.8028 0.8729 2.6997 10 1 0.9759 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 6 2.0324 -0.7105 -1.2304 13 7 1.7832 -1.9885 -1.5604 14 6 2.3748 -2.2639 -2.6847 15 7 3.0283 -1.1557 -3.1134 16 6 2.8116 -0.1738 -2.1931 17 17 3.4193 1.4514 -2.2487 18 6 3.8152 -1.0728 -4.3460 19 6 4.1327 -2.4934 -4.8255 20 6 2.8439 -3.3199 -4.8642 21 6 2.3648 -3.5776 -3.4301 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.9033 -0.5276 4.4376 26 1 4.7441 -0.5369 -4.1510 27 1 3.2421 -0.5485 -5.1107 28 1 4.8417 -2.9581 -4.1404 29 1 4.5671 -2.4510 -5.8243 30 1 3.0362 -4.2711 -5.3604 31 1 2.0765 -2.7720 -5.4112 32 1 1.3531 -3.9829 -3.4475 33 1 3.0353 -4.2836 -2.9400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259907223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:06 Heat of formation + Delta-G solvation = 23.281947 kcal Electronic energy + Delta-G solvation = -16914.422391 eV Core-core repulsion = 14193.716070 eV Total energy + Delta-G solvation = -2720.706321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.29899 -37.99022 -37.62286 -35.97878 -34.10756 -33.39398 -30.25739 -29.17194 -27.07545 -25.32569 -23.65246 -23.12548 -20.80112 -20.06344 -18.58296 -18.03806 -17.16851 -16.68999 -15.71765 -15.46389 -15.10682 -15.06621 -14.88941 -14.71890 -14.15814 -14.03033 -13.38967 -13.07106 -12.93258 -12.54959 -12.51006 -12.34423 -12.02876 -11.91866 -11.90145 -11.82869 -11.37073 -11.21087 -10.80124 -10.64702 -10.38375 -9.02431 -8.24840 -6.27393 0.64583 0.90452 1.33066 1.38001 1.49562 2.05672 2.12854 2.36084 3.09330 3.38124 3.59991 3.79567 3.80701 4.19663 4.29282 4.34115 4.43226 4.52371 4.64899 4.76906 4.85720 4.88252 4.95405 4.96206 5.06963 5.12094 5.23903 5.31323 5.58358 5.64156 5.67332 6.24909 6.36663 6.75043 7.18408 7.34402 8.92921 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.007145 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.290553 B = 3917.987239 C = 4415.935207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.081 3.919 3 H 0.043 0.957 4 C -0.496 4.496 5 H 0.021 0.979 6 C 0.010 3.990 7 N -0.952 5.952 8 Si 0.949 3.051 9 H -0.265 1.265 10 H -0.294 1.294 11 H -0.243 1.243 12 C 0.054 3.946 13 N -0.513 5.513 14 C 0.215 3.785 15 N -0.453 5.453 16 C -0.009 4.009 17 Cl -0.004 7.004 18 C 0.091 3.909 19 C -0.127 4.127 20 C -0.115 4.115 21 C -0.033 4.033 22 H 0.037 0.963 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.266 0.734 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -0.530 -22.361 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.062 3.938 3 H 0.061 0.939 4 C -0.534 4.534 5 H 0.039 0.961 6 C -0.186 4.186 7 N -0.593 5.593 8 Si 0.775 3.225 9 H -0.191 1.191 10 H -0.222 1.222 11 H -0.167 1.167 12 C -0.077 4.077 13 N -0.232 5.232 14 C -0.048 4.048 15 N -0.140 5.140 16 C -0.149 4.149 17 Cl 0.024 6.976 18 C -0.030 4.030 19 C -0.165 4.165 20 C -0.152 4.152 21 C -0.072 4.072 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.414 -0.885 -21.893 22.043 hybrid contribution 0.283 1.290 0.619 1.459 sum 2.697 0.405 -21.273 21.448 Atomic orbital electron populations 1.21934 0.96853 1.00830 0.99222 1.17596 0.93028 0.94552 0.88670 0.93929 1.20994 1.30580 1.11633 0.90216 0.96050 1.25859 0.97407 1.00251 0.95077 1.70053 1.48033 1.42735 0.98512 0.85842 0.79128 0.79910 0.77602 1.19104 1.22163 1.16685 1.20723 0.99830 0.90755 0.96354 1.70029 1.25455 1.14629 1.13137 1.24165 0.95655 0.91809 0.93135 1.45312 1.40306 1.08879 1.19546 1.21211 1.10248 0.86707 0.96696 1.98313 1.86922 1.14182 1.98135 1.22419 0.95825 1.01789 0.82929 1.21948 0.98745 0.91531 1.04241 1.21684 0.97027 1.02691 0.93839 1.20484 1.04683 0.87295 0.94712 0.94426 0.92673 0.93540 0.92552 0.89014 0.88101 0.91273 0.85647 0.86810 0.90739 0.88094 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.65 71.98 0.62 -5.60 16 2 C 0.08 4.24 2.29 -12.29 -0.03 4.21 16 3 H 0.04 2.18 6.47 -2.39 -0.02 2.17 16 4 C -0.50 -31.02 9.13 25.60 0.23 -30.78 16 5 H 0.02 1.51 7.98 -2.91 -0.02 1.49 16 6 C 0.01 0.62 5.45 84.66 0.46 1.09 16 7 N -0.95 -62.86 13.96 21.45 0.30 -62.57 16 8 Si 0.95 47.24 24.37 68.60 1.67 48.91 16 9 H -0.26 -12.55 6.87 99.48 0.68 -11.86 16 10 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 11 H -0.24 -11.15 6.53 99.48 0.65 -10.51 16 12 C 0.05 2.57 5.55 41.43 0.23 2.80 16 13 N -0.51 -23.74 11.24 -175.49 -1.97 -25.71 16 14 C 0.22 7.48 7.65 138.21 1.06 8.53 16 15 N -0.45 -14.40 3.14 -502.79 -1.58 -15.98 16 16 C -0.01 -0.37 7.51 83.25 0.63 0.25 16 17 Cl 0.00 -0.12 28.43 -2.72 -0.08 -0.20 16 18 C 0.09 1.75 6.86 86.47 0.59 2.34 16 19 C -0.13 -1.60 5.94 30.73 0.18 -1.42 16 20 C -0.11 -1.47 5.96 30.77 0.18 -1.28 16 21 C -0.03 -0.73 6.33 30.09 0.19 -0.54 16 22 H 0.04 1.76 3.27 -2.39 -0.01 1.76 16 23 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 26 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.02 8.12 -2.38 -0.02 1.00 16 29 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -79.55 280.36 3.72 -75.83 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: 1.03 Total: 0.11 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 4.35 Total: -20.40 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.25 Total: -104.26 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.67 Total: 48.91 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -79.55 3.72 -75.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259907223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.109 kcal (2) G-P(sol) polarization free energy of solvation -79.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds