Wall clock time and date at job start Mon Mar 30 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36046 * 116.99916 * 2 1 4 4 C 1.39101 * 120.08120 * 89.99638 * 3 2 1 5 5 O 1.35996 * 120.05944 * 0.04039 * 4 3 2 6 6 C 1.38586 * 119.88224 * 180.02562 * 4 3 2 7 7 C 1.38262 * 120.03615 * 359.97438 * 6 4 3 8 8 C 1.38225 * 120.16008 * 0.27420 * 7 6 4 9 9 C 1.50700 * 119.93879 * 179.72477 * 8 7 6 10 10 C 1.52996 * 109.47356 * 244.20509 * 9 8 7 11 11 C 1.52996 * 109.46952 * 4.21001 * 9 8 7 12 12 C 1.50702 * 109.46905 * 124.20540 * 9 8 7 13 13 H 1.08004 * 119.99913 * 359.77268 * 12 9 8 14 14 C 1.37874 * 120.00362 * 179.76244 * 12 9 8 15 15 N 1.31519 * 119.99349 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00435 * 180.02562 * 14 12 9 17 17 H 1.48504 * 109.46895 * 90.00244 * 16 14 12 18 18 H 1.48497 * 109.47022 * 210.00222 * 16 14 12 19 19 H 1.48492 * 109.47028 * 330.00338 * 16 14 12 20 20 C 1.38455 * 120.11774 * 359.45360 * 8 7 6 21 21 F 1.35102 * 120.01726 * 180.27403 * 20 8 7 22 22 H 1.09007 * 109.47033 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47739 * 300.00371 * 1 2 3 24 24 H 1.09001 * 109.46959 * 60.00845 * 1 2 3 25 25 H 0.96697 * 114.00066 * 269.97995 * 5 4 3 26 26 H 1.07998 * 119.98228 * 179.97438 * 6 4 3 27 27 H 1.08001 * 119.92056 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46780 * 59.99811 * 10 9 8 29 29 H 1.08991 * 109.47218 * 179.97438 * 10 9 8 30 30 H 1.08997 * 109.47167 * 300.00692 * 10 9 8 31 31 H 1.08996 * 109.47503 * 59.99873 * 11 9 8 32 32 H 1.09005 * 109.46964 * 179.97438 * 11 9 8 33 33 H 1.08995 * 109.47067 * 299.99363 * 11 9 8 34 34 H 0.97001 * 119.99713 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 2.3631 1.8334 1.2037 5 8 2.0564 1.2298 2.3831 6 6 2.9917 3.0685 1.1989 7 6 3.3041 3.6814 -0.0005 8 6 2.9858 3.0679 -1.1975 9 6 3.3230 3.7433 -2.5018 10 6 2.0320 4.0774 -3.2518 11 6 4.0991 5.0319 -2.2231 12 6 4.1674 2.8200 -3.3419 13 1 4.4363 1.8435 -2.9671 14 6 4.5964 3.2219 -4.5891 15 7 4.2691 4.4112 -5.0453 16 14 5.6425 2.0773 -5.6307 17 1 4.7607 1.2356 -6.4789 18 1 6.5427 2.8803 -6.4966 19 1 6.4553 1.2060 -4.7446 20 6 2.3628 1.8314 -1.2003 21 9 2.0575 1.2311 -2.3715 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.1805 1.4560 2.7246 26 1 3.2378 3.5525 2.1324 27 1 3.7944 4.6437 -0.0021 28 1 1.4213 4.7452 -2.6441 29 1 2.2759 4.5663 -4.1949 30 1 1.4790 3.1594 -3.4503 31 1 5.0189 4.7938 -1.6888 32 1 4.3434 5.5202 -3.1665 33 1 3.4884 5.6997 -1.6155 34 1 4.5713 4.6941 -5.9225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993067.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:28 Heat of formation + Delta-G solvation = -119.027653 kcal Electronic energy + Delta-G solvation = -19605.599004 eV Core-core repulsion = 16418.092550 eV Total energy + Delta-G solvation = -3187.506454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.67780 -41.15673 -39.03010 -38.19002 -36.17909 -33.24943 -31.16266 -29.53874 -28.08584 -27.34700 -27.19647 -24.03609 -23.31788 -21.03746 -19.68401 -18.49804 -18.35380 -17.78187 -17.16229 -16.88888 -16.63572 -15.87860 -15.66887 -15.40630 -15.32585 -14.80962 -14.36358 -13.85461 -13.58845 -13.22767 -13.20022 -12.91929 -12.72913 -12.66670 -12.44022 -12.35991 -12.11759 -11.97568 -11.51360 -11.43871 -10.87677 -10.75932 -10.38392 -9.60029 -9.31193 -8.02934 -6.16738 0.05977 0.20266 1.37728 1.40516 1.49125 2.36759 2.47033 2.71479 2.96912 3.20279 3.68933 4.02836 4.04971 4.34243 4.36610 4.40105 4.56467 4.70997 4.79746 4.88375 4.94648 4.99450 5.12165 5.20478 5.26775 5.40449 5.47742 5.61723 5.69139 5.75486 6.09912 6.21624 6.31585 6.41778 6.83896 6.85503 7.48999 8.95840 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026676 B = 0.007687 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.392883 B = 3641.734877 C = 4091.250101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.017 3.983 4 C 0.097 3.903 5 O -0.487 6.487 6 C -0.128 4.128 7 C -0.094 4.094 8 C -0.087 4.087 9 C 0.091 3.909 10 C -0.121 4.121 11 C -0.123 4.123 12 C -0.509 4.509 13 H 0.032 0.968 14 C 0.028 3.972 15 N -0.900 5.900 16 Si 0.938 3.062 17 H -0.283 1.283 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.073 3.927 21 F -0.141 7.141 22 H 0.117 0.883 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.406 0.594 26 H 0.172 0.828 27 H 0.157 0.843 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.018 0.982 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -1.158 12.794 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C -0.029 4.029 4 C 0.052 3.948 5 O -0.300 6.300 6 C -0.147 4.147 7 C -0.112 4.112 8 C -0.088 4.088 9 C 0.091 3.909 10 C -0.179 4.179 11 C -0.181 4.181 12 C -0.547 4.547 13 H 0.051 0.949 14 C -0.171 4.171 15 N -0.539 5.539 16 Si 0.765 3.235 17 H -0.209 1.209 18 H -0.202 1.202 19 H -0.203 1.203 20 C 0.054 3.946 21 F -0.119 7.119 22 H 0.135 0.865 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.265 0.735 26 H 0.189 0.811 27 H 0.174 0.826 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.536 -1.499 12.531 14.213 hybrid contribution -0.124 -0.619 -1.315 1.459 sum -6.660 -2.118 11.216 13.215 Atomic orbital electron populations 1.23243 0.77338 1.04933 1.01124 1.86079 1.21878 1.23940 1.94357 1.19189 1.03198 0.89065 0.91402 1.18333 1.00899 0.91639 0.83929 1.84847 1.40703 1.70698 1.33707 1.21632 0.99891 0.93386 0.99745 1.21288 0.98758 1.01238 0.89878 1.20726 0.96304 0.92995 0.98752 1.17196 0.93208 0.93176 0.87331 1.21691 0.96125 0.98434 1.01640 1.21748 0.98125 0.97076 1.01136 1.21145 1.31735 1.00420 1.01377 0.94925 1.25386 0.97089 0.96303 0.98299 1.69895 1.46285 1.18986 1.18772 0.85872 0.79155 0.79450 0.79060 1.20926 1.20175 1.20326 1.18139 1.02933 0.92979 0.80594 1.91429 1.90975 1.83031 1.46500 0.86523 0.91292 0.94586 0.73504 0.81084 0.82570 0.95139 0.91434 0.96310 0.94752 0.91907 0.93782 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.13 113.37 1.26 1.92 16 2 O -0.35 -12.14 10.07 -80.19 -0.81 -12.94 16 3 C 0.02 0.61 5.74 22.59 0.13 0.74 16 4 C 0.10 2.94 6.72 22.56 0.15 3.09 16 5 O -0.49 -11.76 13.29 -79.61 -1.06 -12.82 16 6 C -0.13 -3.52 9.98 22.36 0.22 -3.30 16 7 C -0.09 -3.13 8.98 22.27 0.20 -2.93 16 8 C -0.09 -3.68 4.73 -19.82 -0.09 -3.77 16 9 C 0.09 4.39 0.49 -53.68 -0.03 4.36 16 10 C -0.12 -5.85 8.08 71.98 0.58 -5.27 16 11 C -0.12 -5.48 6.92 71.98 0.50 -4.98 16 12 C -0.51 -28.09 6.88 25.60 0.18 -27.91 16 13 H 0.03 1.91 7.28 -2.91 -0.02 1.88 16 14 C 0.03 1.56 5.15 84.65 0.44 1.99 16 15 N -0.90 -49.48 9.35 21.45 0.20 -49.28 16 16 Si 0.94 44.70 29.54 68.60 2.03 46.72 16 17 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 20 C 0.07 3.18 6.62 22.44 0.15 3.33 16 21 F -0.14 -6.90 14.18 44.97 0.64 -6.27 16 22 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.41 5.21 9.06 -74.06 -0.67 4.54 16 26 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.16 4.63 5.89 -2.91 -0.02 4.61 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 3.55 6.05 -2.39 -0.01 3.54 16 30 H 0.02 0.90 6.66 -2.39 -0.02 0.88 16 31 H 0.03 1.45 7.71 -2.39 -0.02 1.43 16 32 H 0.06 3.13 6.09 -2.38 -0.01 3.11 16 33 H 0.04 1.64 7.31 -2.39 -0.02 1.63 16 34 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -66.28 284.15 5.14 -61.13 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.46 Total: 6.17 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 3.69 Total: -32.72 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.20 Total: -49.28 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -1.87 Total: -25.76 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.64 Total: -6.27 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.28 5.14 -61.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993067.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.893 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds