Wall clock time and date at job start Mon Mar 30 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00021 * 2 1 4 4 C 1.38755 * 120.00989 * 359.97438 * 3 2 1 5 5 C 1.38381 * 120.02557 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.96961 * 180.02562 * 5 4 3 7 7 C 1.38428 * 120.06075 * 359.97438 * 5 4 3 8 8 C 1.50697 * 119.98458 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47466 * 89.99797 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38711 * 120.02805 * 0.27290 * 7 5 4 19 19 O 1.35892 * 120.01540 * 179.72787 * 18 7 5 20 20 C 1.42900 * 117.00120 * 180.02562 * 19 18 7 21 21 C 1.38629 * 120.01602 * 180.02562 * 3 2 1 22 22 H 1.08994 * 109.47024 * 60.00041 * 1 2 3 23 23 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46568 * 300.00064 * 1 2 3 25 25 H 1.07998 * 119.99047 * 0.04968 * 4 3 2 26 26 H 1.09002 * 109.47120 * 329.99550 * 8 7 5 27 27 H 1.08998 * 109.46862 * 210.00352 * 8 7 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.47055 * 299.99591 * 20 19 18 32 32 H 1.08999 * 109.46922 * 60.00257 * 20 19 18 33 33 H 1.09005 * 109.46736 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.02565 * 359.94849 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2905 2.3747 -0.0005 5 6 1.9184 3.6079 -0.0011 6 9 1.1817 4.7403 -0.0011 7 6 3.3007 3.6822 -0.0005 8 6 3.9827 5.0260 -0.0005 9 6 4.2129 5.4811 1.4419 10 6 4.8955 6.8247 1.4418 11 1 5.1402 7.3060 0.5065 12 6 5.2066 7.4399 2.6359 13 7 4.9081 6.8540 3.7748 14 14 6.0520 9.1056 2.6358 15 1 5.0276 10.1807 2.6346 16 1 6.8995 9.2308 3.8488 17 1 6.9012 9.2298 1.4239 18 6 4.0583 2.5202 -0.0052 19 8 5.4152 2.5935 -0.0102 20 6 6.1317 1.3571 -0.0154 21 6 3.4304 1.2838 -0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 0.2120 2.3182 -0.0001 26 1 3.3537 5.7526 -0.5148 27 1 4.9409 4.9471 -0.5140 28 1 4.8419 4.7545 1.9562 29 1 3.2546 5.5601 1.9553 30 1 5.1274 7.2867 4.6149 31 1 5.8727 0.7834 0.8744 32 1 5.8658 0.7869 -0.9055 33 1 7.2030 1.5580 -0.0196 34 1 4.0192 0.3785 -0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260015397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:31 Heat of formation + Delta-G solvation = -106.467516 kcal Electronic energy + Delta-G solvation = -18662.921757 eV Core-core repulsion = 15475.959951 eV Total energy + Delta-G solvation = -3186.961806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.52960 -40.32843 -38.89364 -36.32077 -33.78416 -31.85077 -29.98716 -28.89113 -27.26373 -27.06784 -24.71341 -22.09363 -21.98122 -20.20446 -18.73156 -17.24499 -16.37019 -16.34657 -15.95766 -15.76299 -15.40996 -15.15823 -14.98873 -14.40983 -14.34318 -13.99138 -12.86408 -12.61669 -12.52704 -12.27358 -12.03386 -11.79612 -11.57113 -11.41192 -11.22128 -10.84893 -10.79800 -10.48719 -10.20661 -9.71758 -9.49254 -9.00665 -8.28373 -8.25737 -7.67739 -5.90944 -3.92890 1.38120 1.54789 3.08963 3.37920 3.43440 3.46534 3.47408 3.78207 4.53400 4.57074 4.95962 5.03589 5.04527 5.11055 5.14840 5.27742 5.30515 5.33367 5.44695 5.52351 5.63964 5.69616 6.14783 6.22597 6.38807 6.67077 6.80186 6.83299 7.18412 7.28267 7.58354 7.78422 7.94047 8.09975 8.51055 9.13666 9.70034 11.20450 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026411 B = 0.005580 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.913559 B = 5016.694672 C = 5646.177294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.174 3.826 4 C -0.281 4.281 5 C 0.172 3.828 6 F -0.126 7.126 7 C -0.158 4.158 8 C -0.066 4.066 9 C 0.033 3.967 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.192 3.808 19 O -0.292 6.292 20 C 0.025 3.975 21 C -0.252 4.252 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.057 0.943 25 H 0.137 0.863 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -14.779 -8.506 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.128 3.872 4 C -0.300 4.300 5 C 0.152 3.848 6 F -0.104 7.104 7 C -0.159 4.159 8 C -0.103 4.103 9 C -0.004 4.004 10 C -0.555 4.555 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C 0.145 3.855 19 O -0.204 6.204 20 C -0.070 4.070 21 C -0.272 4.272 22 H 0.075 0.925 23 H 0.117 0.883 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.316 -14.738 -8.316 17.738 hybrid contribution -0.023 0.910 0.216 0.936 sum -5.339 -13.828 -8.100 16.892 Atomic orbital electron populations 1.23069 0.78329 1.03737 1.01727 1.86043 1.21472 1.26593 1.88692 1.18128 0.91166 0.83478 0.94393 1.20909 1.00677 0.91039 1.17408 1.16780 0.88001 0.81478 0.98510 1.91510 1.76398 1.49234 1.93259 1.19579 0.91168 0.96969 1.08226 1.20568 0.98730 0.88886 1.02150 1.19039 0.96855 0.95851 0.88705 1.21244 1.38263 1.03652 0.92301 0.92615 1.25009 0.96045 0.97717 0.95650 1.69979 1.47902 1.38475 0.97200 0.86603 0.79544 0.84472 0.77436 1.20717 1.21296 1.19856 1.18086 0.82943 0.91616 0.92815 1.86242 1.14564 1.31994 1.87593 1.23104 0.97073 0.85622 1.01191 1.20310 0.92450 0.97499 1.16940 0.92524 0.88315 0.92391 0.84552 0.92179 0.91344 0.96276 0.96763 0.93114 0.92496 0.92780 0.88067 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.04 10.49 -19.44 -0.20 -4.24 16 3 C 0.17 2.60 6.68 -39.25 -0.26 2.34 16 4 C -0.28 -4.35 9.01 -39.34 -0.35 -4.70 16 5 C 0.17 3.20 7.24 -39.46 -0.29 2.91 16 6 F -0.13 -2.45 16.47 2.25 0.04 -2.42 16 7 C -0.16 -3.16 5.15 -104.38 -0.54 -3.70 16 8 C -0.07 -1.50 4.88 -27.89 -0.14 -1.64 16 9 C 0.03 0.90 4.95 -27.88 -0.14 0.76 16 10 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -27.84 13.29 55.43 0.74 -27.11 16 14 Si 0.89 22.26 29.54 -169.99 -5.02 17.23 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.19 3.44 6.65 -39.25 -0.26 3.17 16 19 O -0.29 -5.08 9.53 -19.40 -0.18 -5.27 16 20 C 0.03 0.30 9.81 101.05 0.99 1.29 16 21 C -0.25 -3.87 8.97 -39.28 -0.35 -4.22 16 22 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 23 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 25 H 0.14 1.74 6.29 -52.49 -0.33 1.41 16 26 H 0.06 1.34 7.64 -51.93 -0.40 0.95 16 27 H 0.07 1.53 7.52 -51.93 -0.39 1.14 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.06 0.61 7.65 -51.93 -0.40 0.22 16 32 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.14 1.75 6.29 -52.49 -0.33 1.42 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -33.41 295.37 -5.21 -38.62 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -4.27 Total: -4.75 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.76 Total: -16.53 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.74 Total: -27.11 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.39 Total: -9.51 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.41 -5.21 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260015397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.850 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds