Wall clock time and date at job start Mon Mar 30 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00021 * 2 1 4 4 C 1.38755 * 120.00989 * 359.97438 * 3 2 1 5 5 C 1.38381 * 120.02557 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.96961 * 180.02562 * 5 4 3 7 7 C 1.38428 * 120.06075 * 359.97438 * 5 4 3 8 8 C 1.50697 * 119.98458 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47466 * 89.99797 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38711 * 120.02805 * 0.27290 * 7 5 4 19 19 O 1.35892 * 120.01540 * 179.72787 * 18 7 5 20 20 C 1.42900 * 117.00120 * 180.02562 * 19 18 7 21 21 C 1.38629 * 120.01602 * 180.02562 * 3 2 1 22 22 H 1.08994 * 109.47024 * 60.00041 * 1 2 3 23 23 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46568 * 300.00064 * 1 2 3 25 25 H 1.07998 * 119.99047 * 0.04968 * 4 3 2 26 26 H 1.09002 * 109.47120 * 329.99550 * 8 7 5 27 27 H 1.08998 * 109.46862 * 210.00352 * 8 7 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.47055 * 299.99591 * 20 19 18 32 32 H 1.08999 * 109.46922 * 60.00257 * 20 19 18 33 33 H 1.09005 * 109.46736 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.02565 * 359.94849 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2905 2.3747 -0.0005 5 6 1.9184 3.6079 -0.0011 6 9 1.1817 4.7403 -0.0011 7 6 3.3007 3.6822 -0.0005 8 6 3.9827 5.0260 -0.0005 9 6 4.2129 5.4811 1.4419 10 6 4.8955 6.8247 1.4418 11 1 5.1402 7.3060 0.5065 12 6 5.2066 7.4399 2.6359 13 7 4.9081 6.8540 3.7748 14 14 6.0520 9.1056 2.6358 15 1 5.0276 10.1807 2.6346 16 1 6.8995 9.2308 3.8488 17 1 6.9012 9.2298 1.4239 18 6 4.0583 2.5202 -0.0052 19 8 5.4152 2.5935 -0.0102 20 6 6.1317 1.3571 -0.0154 21 6 3.4304 1.2838 -0.0005 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 0.2120 2.3182 -0.0001 26 1 3.3537 5.7526 -0.5148 27 1 4.9409 4.9471 -0.5140 28 1 4.8419 4.7545 1.9562 29 1 3.2546 5.5601 1.9553 30 1 5.1274 7.2867 4.6149 31 1 5.8727 0.7834 0.8744 32 1 5.8658 0.7869 -0.9055 33 1 7.2030 1.5580 -0.0196 34 1 4.0192 0.3785 -0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260015397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:31 Heat of formation + Delta-G solvation = -127.860010 kcal Electronic energy + Delta-G solvation = -18663.849405 eV Core-core repulsion = 15475.959951 eV Total energy + Delta-G solvation = -3187.889454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.99866 -41.53624 -40.00174 -37.61359 -35.76160 -33.75495 -31.22404 -30.48253 -28.31853 -28.12033 -26.56138 -23.78235 -23.24265 -21.93547 -19.90010 -18.57192 -18.50966 -17.46503 -17.15219 -17.08575 -16.55321 -16.46093 -16.37914 -16.30424 -15.50356 -15.31841 -14.75097 -14.40683 -13.75564 -13.59672 -13.43862 -13.24615 -12.89464 -12.80326 -12.61928 -12.37907 -12.36028 -12.08716 -11.75581 -11.70231 -11.27567 -11.15552 -10.55572 -9.54142 -9.05656 -8.18654 -6.31091 0.06930 0.25066 1.39660 1.42338 1.53596 2.03824 2.38543 2.40866 2.49298 3.13477 3.29108 3.82179 3.87772 3.90518 4.15192 4.24614 4.39471 4.41176 4.43322 4.53786 4.58428 4.75195 4.77720 4.82887 4.97918 5.00520 5.13885 5.16750 5.45303 5.54384 5.72388 5.83312 6.20760 6.23163 6.40025 6.84292 7.37679 8.93319 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026411 B = 0.005580 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.913559 B = 5016.694672 C = 5646.177294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.186 3.814 4 C -0.275 4.275 5 C 0.155 3.845 6 F -0.139 7.139 7 C -0.199 4.199 8 C -0.049 4.049 9 C 0.044 3.956 10 C -0.544 4.544 11 H 0.061 0.939 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.262 1.262 18 C 0.188 3.812 19 O -0.323 6.323 20 C 0.014 3.986 21 C -0.248 4.248 22 H 0.068 0.932 23 H 0.129 0.871 24 H 0.062 0.938 25 H 0.165 0.835 26 H 0.054 0.946 27 H 0.066 0.934 28 H -0.010 1.010 29 H -0.019 1.019 30 H 0.264 0.736 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 -16.037 -9.240 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.229 6.229 3 C 0.140 3.860 4 C -0.294 4.294 5 C 0.136 3.864 6 F -0.117 7.117 7 C -0.201 4.201 8 C -0.086 4.086 9 C 0.007 3.993 10 C -0.581 4.581 11 H 0.079 0.921 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.793 3.207 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.186 1.186 18 C 0.141 3.859 19 O -0.236 6.236 20 C -0.080 4.080 21 C -0.267 4.267 22 H 0.087 0.913 23 H 0.147 0.853 24 H 0.081 0.919 25 H 0.182 0.818 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.008 0.992 29 H 0.000 1.000 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.498 -16.019 -9.067 19.210 hybrid contribution -0.028 1.122 0.453 1.210 sum -5.525 -14.897 -8.613 18.073 Atomic orbital electron populations 1.23468 0.75933 1.06147 1.02537 1.86067 1.23857 1.25027 1.87946 1.18229 0.91226 0.84134 0.92448 1.21126 1.02163 0.89836 1.16270 1.17048 0.87693 0.82233 0.99454 1.91467 1.76555 1.50188 1.93534 1.19460 0.92154 0.96271 1.12188 1.20179 0.98960 0.90912 0.98577 1.18823 0.94217 0.94893 0.91348 1.21669 1.38888 1.04681 0.92898 0.92098 1.26019 0.96518 1.02235 0.95005 1.70122 1.48807 1.40526 0.98006 0.85391 0.78524 0.78759 0.78028 1.19715 1.20446 1.18563 1.18146 0.83319 0.91811 0.92600 1.86194 1.14592 1.35289 1.87544 1.23470 0.97452 0.84209 1.02820 1.20550 0.93070 0.97400 1.15709 0.91333 0.85260 0.91927 0.81768 0.92684 0.91550 0.99180 1.00025 0.92738 0.91543 0.90303 0.86462 0.81588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -7.04 10.49 -92.46 -0.97 -8.01 16 3 C 0.19 5.15 6.68 22.49 0.15 5.30 16 4 C -0.27 -8.12 9.01 22.43 0.20 -7.92 16 5 C 0.16 5.87 7.24 22.35 0.16 6.04 16 6 F -0.14 -5.61 16.47 44.97 0.74 -4.87 16 7 C -0.20 -8.24 5.15 -19.71 -0.10 -8.34 16 8 C -0.05 -2.34 4.88 29.85 0.15 -2.20 16 9 C 0.04 2.58 4.95 29.85 0.15 2.73 16 10 C -0.54 -33.09 9.11 25.60 0.23 -32.86 16 11 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 12 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 13 N -0.93 -59.54 13.29 21.45 0.28 -59.26 16 14 Si 0.97 46.04 29.54 68.60 2.03 48.06 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 18 C 0.19 6.75 6.65 22.49 0.15 6.90 16 19 O -0.32 -11.33 9.53 -92.34 -0.88 -12.21 16 20 C 0.01 0.31 9.81 113.37 1.11 1.43 16 21 C -0.25 -7.16 8.97 22.47 0.20 -6.96 16 22 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 23 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 0.84 7.66 -2.39 -0.02 0.83 16 25 H 0.16 3.79 6.29 -2.91 -0.02 3.78 16 26 H 0.05 2.60 7.64 -2.39 -0.02 2.58 16 27 H 0.07 3.11 7.52 -2.39 -0.02 3.10 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 32 H 0.08 1.33 7.67 -2.39 -0.02 1.31 16 33 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.17 3.72 6.29 -2.91 -0.02 3.71 16 Total: -1.00 -74.62 295.37 6.28 -68.33 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.10 Total: 2.11 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 3.98 Total: -34.15 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.28 Total: -59.26 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -1.85 Total: -20.22 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.74 Total: -4.87 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.62 6.28 -68.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260015397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.526 kcal (2) G-P(sol) polarization free energy of solvation -74.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds