Wall clock time and date at job start Mon Mar 30 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46999 * 2 1 4 4 C 1.50700 * 109.47352 * 240.00061 * 2 1 3 5 5 H 1.07998 * 120.00320 * 240.00692 * 4 2 1 6 6 C 1.37880 * 119.99783 * 59.99486 * 4 2 1 7 7 N 1.31515 * 120.00254 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99870 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47141 * 59.99987 * 8 6 4 10 10 H 1.48493 * 109.46941 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46673 * 300.00097 * 8 6 4 12 12 C 1.50697 * 109.47034 * 119.99947 * 2 1 3 13 13 C 1.37946 * 119.56975 * 35.30051 * 12 2 1 14 14 C 1.39409 * 119.07843 * 180.22407 * 13 12 2 15 15 N 1.39248 * 120.86364 * 179.75160 * 14 13 12 16 16 C 1.46901 * 110.99897 * 59.72783 * 15 14 13 17 17 C 1.46898 * 110.99900 * 295.76968 * 15 14 13 18 18 C 1.39578 * 118.26472 * 359.48639 * 14 13 12 19 19 Cl 1.73602 * 120.47367 * 180.29272 * 18 14 13 20 20 C 1.37964 * 119.05112 * 0.26276 * 18 14 13 21 21 N 1.31967 * 119.56640 * 215.00063 * 12 2 1 22 22 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47153 * 299.99944 * 1 2 3 24 24 H 1.09003 * 109.47343 * 59.99963 * 1 2 3 25 25 H 0.96992 * 120.00175 * 180.02562 * 7 6 4 26 26 H 1.08006 * 120.46032 * 359.97438 * 13 12 2 27 27 H 1.09002 * 109.47401 * 59.99631 * 16 15 14 28 28 H 1.09001 * 109.46874 * 299.99643 * 16 15 14 29 29 H 1.09004 * 109.46970 * 179.97438 * 16 15 14 30 30 H 1.09006 * 109.46770 * 179.97438 * 17 15 14 31 31 H 1.09001 * 109.47456 * 300.00119 * 17 15 14 32 32 H 1.09000 * 109.46814 * 60.00425 * 17 15 14 33 33 H 1.08000 * 119.58741 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1207 -4.0081 12 6 2.0323 -0.7104 1.2305 13 6 1.3360 -1.7949 1.7223 14 6 1.8072 -2.4415 2.8639 15 7 1.1309 -3.5367 3.3951 16 6 1.0467 -4.6288 2.4163 17 6 -0.2047 -3.1508 3.8698 18 6 2.9778 -1.9661 3.4572 19 17 3.6199 -2.7328 4.8761 20 6 3.6176 -0.8784 2.8994 21 7 3.1358 -0.2905 1.8199 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7087 1.1613 -3.4843 26 1 0.4360 -2.1358 1.2321 27 1 2.0518 -4.9421 2.1341 28 1 0.5119 -4.2833 1.5316 29 1 0.5141 -5.4716 2.8572 30 1 -0.7113 -4.0249 4.2793 31 1 -0.1093 -2.3897 4.6442 32 1 -0.7848 -2.7519 3.0376 33 1 4.5237 -0.5031 3.3516 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260051496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:58 Heat of formation + Delta-G solvation = 31.121328 kcal Electronic energy + Delta-G solvation = -16757.667488 eV Core-core repulsion = 14037.301108 eV Total energy + Delta-G solvation = -2720.366379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20863 -37.21915 -36.21238 -34.47750 -31.59898 -30.70237 -28.58456 -27.58539 -25.41741 -24.83863 -23.40596 -21.50430 -19.75690 -16.89995 -16.55152 -16.29882 -15.49445 -15.08069 -14.71772 -14.18539 -13.69788 -13.50650 -13.33794 -12.71760 -12.33473 -12.07181 -11.95612 -11.70777 -11.63611 -11.40636 -10.99715 -10.87004 -10.74385 -10.46840 -10.23429 -9.95270 -9.25165 -9.10408 -8.93449 -8.54289 -8.40883 -8.12260 -6.10439 -4.17915 1.48251 1.53026 2.47635 3.26775 3.31444 3.34572 3.81277 4.16522 4.39938 4.89874 5.09954 5.21068 5.27578 5.34651 5.35764 5.48697 5.63884 5.67827 5.84358 5.90636 5.99335 6.15985 6.47417 6.70076 6.76240 6.82191 6.94988 7.13697 7.33493 7.56246 7.73827 7.94304 8.22071 8.59310 8.82212 9.46410 10.95533 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.006281 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.460129 B = 4456.972934 C = 4690.448202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.052 0.948 4 C -0.507 4.507 5 H 0.054 0.946 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.192 3.808 13 C -0.189 4.189 14 C 0.131 3.869 15 N -0.504 5.504 16 C 0.027 3.973 17 C 0.029 3.971 18 C -0.096 4.096 19 Cl -0.065 7.065 20 C 0.114 3.886 21 N -0.474 5.474 22 H 0.029 0.971 23 H 0.011 0.989 24 H 0.092 0.908 25 H 0.264 0.736 26 H 0.140 0.860 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 -7.351 11.282 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.063 3.937 3 H 0.070 0.930 4 C -0.545 4.545 5 H 0.073 0.927 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.055 3.945 13 C -0.211 4.211 14 C 0.028 3.972 15 N -0.225 5.225 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.126 4.126 19 Cl -0.037 7.037 20 C -0.045 4.045 21 N -0.183 5.183 22 H 0.048 0.952 23 H 0.030 0.970 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.158 0.842 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.159 -6.775 11.328 13.200 hybrid contribution -0.477 -1.059 -1.030 1.552 sum -0.636 -7.834 10.298 12.955 Atomic orbital electron populations 1.21881 0.97308 0.99260 1.00910 1.17896 0.92603 0.96445 0.86795 0.93013 1.20832 1.31799 1.12474 0.89421 0.92744 1.24903 0.94893 0.94939 0.98878 1.69856 1.36278 1.22601 1.23820 0.86577 0.79399 0.79634 0.81981 1.20244 1.21079 1.20110 1.22275 0.87380 0.90655 0.94142 1.22576 1.03223 0.98378 0.96888 1.18873 0.93147 0.92240 0.92891 1.59496 1.18532 1.06564 1.37894 1.22464 1.02667 0.93169 0.93652 1.22442 0.87797 1.01480 1.00069 1.21921 0.97551 0.99377 0.93755 1.98313 1.85567 1.81305 1.38490 1.22738 0.98800 0.90808 0.92116 1.67891 1.12878 1.30042 1.07503 0.95212 0.96967 0.88962 0.92645 0.84237 0.91100 0.94367 0.90812 0.90786 0.91193 0.94600 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.40 37.16 0.31 -2.79 16 2 C 0.08 2.03 2.61 -92.93 -0.24 1.78 16 3 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 4 C -0.51 -13.65 8.55 -34.44 -0.29 -13.94 16 5 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.53 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.19 4.21 5.72 -82.64 -0.47 3.74 16 13 C -0.19 -3.59 7.74 -39.25 -0.30 -3.90 16 14 C 0.13 2.22 4.74 -83.56 -0.40 1.82 16 15 N -0.50 -7.22 4.49 -186.61 -0.84 -8.05 16 16 C 0.03 0.35 9.35 60.07 0.56 0.91 16 17 C 0.03 0.35 9.39 60.06 0.56 0.91 16 18 C -0.10 -1.61 6.36 -39.18 -0.25 -1.85 16 19 Cl -0.07 -0.94 28.55 -51.86 -1.48 -2.42 16 20 C 0.11 2.01 10.97 -17.57 -0.19 1.82 16 21 N -0.47 -10.08 10.27 -9.54 -0.10 -10.17 16 22 H 0.03 0.63 6.49 -51.93 -0.34 0.29 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 26 H 0.14 2.59 5.43 -52.48 -0.29 2.31 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 29 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 30 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.44 7.43 -51.93 -0.39 0.06 16 33 H 0.16 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 290.15 15.07 4.37 4.37 Total: -1.00 -28.08 290.15 -7.44 -35.52 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.19 Total: -1.44 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.81 Total: -9.81 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.31 Total: -42.13 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.48 Total: -2.42 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.08 -7.44 -35.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.646 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds