Wall clock time and date at job start Mon Mar 30 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46999 * 2 1 4 4 C 1.50700 * 109.47352 * 240.00061 * 2 1 3 5 5 H 1.07998 * 120.00320 * 240.00692 * 4 2 1 6 6 C 1.37880 * 119.99783 * 59.99486 * 4 2 1 7 7 N 1.31515 * 120.00254 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99870 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47141 * 59.99987 * 8 6 4 10 10 H 1.48493 * 109.46941 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46673 * 300.00097 * 8 6 4 12 12 C 1.50697 * 109.47034 * 119.99947 * 2 1 3 13 13 C 1.37946 * 119.56975 * 35.30051 * 12 2 1 14 14 C 1.39409 * 119.07843 * 180.22407 * 13 12 2 15 15 N 1.39248 * 120.86364 * 179.75160 * 14 13 12 16 16 C 1.46901 * 110.99897 * 59.72783 * 15 14 13 17 17 C 1.46898 * 110.99900 * 295.76968 * 15 14 13 18 18 C 1.39578 * 118.26472 * 359.48639 * 14 13 12 19 19 Cl 1.73602 * 120.47367 * 180.29272 * 18 14 13 20 20 C 1.37964 * 119.05112 * 0.26276 * 18 14 13 21 21 N 1.31967 * 119.56640 * 215.00063 * 12 2 1 22 22 H 1.09003 * 109.46999 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47153 * 299.99944 * 1 2 3 24 24 H 1.09003 * 109.47343 * 59.99963 * 1 2 3 25 25 H 0.96992 * 120.00175 * 180.02562 * 7 6 4 26 26 H 1.08006 * 120.46032 * 359.97438 * 13 12 2 27 27 H 1.09002 * 109.47401 * 59.99631 * 16 15 14 28 28 H 1.09001 * 109.46874 * 299.99643 * 16 15 14 29 29 H 1.09004 * 109.46970 * 179.97438 * 16 15 14 30 30 H 1.09006 * 109.46770 * 179.97438 * 17 15 14 31 31 H 1.09001 * 109.47456 * 300.00119 * 17 15 14 32 32 H 1.09000 * 109.46814 * 60.00425 * 17 15 14 33 33 H 1.08000 * 119.58741 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8259 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1207 -4.0081 12 6 2.0323 -0.7104 1.2305 13 6 1.3360 -1.7949 1.7223 14 6 1.8072 -2.4415 2.8639 15 7 1.1309 -3.5367 3.3951 16 6 1.0467 -4.6288 2.4163 17 6 -0.2047 -3.1508 3.8698 18 6 2.9778 -1.9661 3.4572 19 17 3.6199 -2.7328 4.8761 20 6 3.6176 -0.8784 2.8994 21 7 3.1358 -0.2905 1.8199 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7087 1.1613 -3.4843 26 1 0.4360 -2.1358 1.2321 27 1 2.0518 -4.9421 2.1341 28 1 0.5119 -4.2833 1.5316 29 1 0.5141 -5.4716 2.8572 30 1 -0.7113 -4.0249 4.2793 31 1 -0.1093 -2.3897 4.6442 32 1 -0.7848 -2.7519 3.0376 33 1 4.5237 -0.5031 3.3516 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260051496.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:57 Heat of formation + Delta-G solvation = 14.630497 kcal Electronic energy + Delta-G solvation = -16758.382584 eV Core-core repulsion = 14037.301108 eV Total energy + Delta-G solvation = -2721.081476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.62670 -38.48621 -37.49346 -36.30782 -33.47411 -32.05656 -30.23983 -28.56257 -27.36611 -26.12030 -25.03374 -22.93092 -21.37229 -18.52196 -18.11682 -17.91104 -16.96067 -16.51227 -16.20728 -15.46281 -15.10595 -15.04847 -14.76840 -14.41554 -13.70334 -13.42381 -13.28161 -13.00638 -12.95584 -12.84823 -12.67586 -12.60020 -12.32095 -12.12899 -12.08239 -11.73911 -11.17020 -10.58930 -10.50303 -10.37216 -9.66246 -9.62036 -8.15033 -6.30095 0.03871 0.10833 1.15791 1.40467 1.42093 1.49801 2.38325 2.67615 2.73010 3.12204 3.47608 3.82725 3.91911 4.07379 4.37143 4.38308 4.49987 4.54547 4.59109 4.73712 4.83473 4.92743 4.94066 4.94566 5.07364 5.14217 5.47183 5.56350 5.75965 5.78620 5.96428 6.07541 6.21705 6.74752 7.07508 7.37512 8.89764 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.026397 B = 0.006281 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.460129 B = 4456.972934 C = 4690.448202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.082 3.918 3 H 0.011 0.989 4 C -0.523 4.523 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.167 3.833 13 C -0.190 4.190 14 C 0.142 3.858 15 N -0.506 5.506 16 C 0.026 3.974 17 C 0.027 3.973 18 C -0.093 4.093 19 Cl -0.037 7.037 20 C 0.113 3.887 21 N -0.507 5.507 22 H 0.041 0.959 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.265 0.735 26 H 0.141 0.859 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 -9.293 12.528 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.063 3.937 3 H 0.029 0.971 4 C -0.562 4.562 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.030 3.970 13 C -0.212 4.212 14 C 0.038 3.962 15 N -0.227 5.227 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.124 4.124 19 Cl -0.008 7.008 20 C -0.045 4.045 21 N -0.216 5.216 22 H 0.060 0.940 23 H 0.046 0.954 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.154 -8.726 12.584 15.314 hybrid contribution -0.436 -0.503 -1.261 1.425 sum -0.589 -9.229 11.324 14.620 Atomic orbital electron populations 1.21680 0.96201 0.99764 1.00356 1.17690 0.93542 0.94373 0.88070 0.97084 1.21059 1.31851 1.12408 0.90837 0.93755 1.25640 0.95021 0.95598 1.01549 1.69977 1.37005 1.23613 1.24444 0.85652 0.78611 0.78963 0.78720 1.19290 1.20341 1.20219 1.21833 0.88802 0.92167 0.94168 1.22471 1.03088 0.97838 0.97768 1.19002 0.93067 0.92348 0.91737 1.59668 1.19652 1.05674 1.37715 1.22548 1.02638 0.93481 0.93380 1.22550 0.86661 1.02872 0.99847 1.22007 0.97178 0.98864 0.94309 1.98325 1.85120 1.80682 1.36674 1.23142 0.99459 0.90841 0.91078 1.67767 1.13202 1.31503 1.09167 0.94049 0.95352 0.91499 0.92538 0.84167 0.91803 0.95203 0.87715 0.87866 0.91320 0.95077 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.40 71.98 0.60 -5.11 16 2 C 0.08 4.24 2.61 -12.29 -0.03 4.21 16 3 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.52 -28.93 8.55 25.60 0.22 -28.71 16 5 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 8 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 C 0.17 7.43 5.72 42.47 0.24 7.67 16 13 C -0.19 -7.15 7.74 22.48 0.17 -6.97 16 14 C 0.14 4.56 4.74 38.57 0.18 4.75 16 15 N -0.51 -13.15 4.49 -744.32 -3.34 -16.49 16 16 C 0.03 0.59 9.35 127.69 1.19 1.79 16 17 C 0.03 0.57 9.39 127.69 1.20 1.77 16 18 C -0.09 -2.95 6.36 22.53 0.14 -2.80 16 19 Cl -0.04 -0.95 28.55 -2.72 -0.08 -1.03 16 20 C 0.11 3.87 10.97 84.60 0.93 4.80 16 21 N -0.51 -21.77 10.27 -184.11 -1.89 -23.66 16 22 H 0.04 1.78 6.49 -2.39 -0.02 1.77 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 25 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.14 5.16 5.43 -2.91 -0.02 5.14 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.74 7.18 -2.39 -0.02 0.72 16 29 H 0.10 1.75 8.12 -2.38 -0.02 1.73 16 30 H 0.10 1.62 8.12 -2.38 -0.02 1.60 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 0.70 7.43 -2.39 -0.02 0.68 16 33 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -61.06 290.15 3.37 -57.68 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.11 Total: 6.64 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.30 Total: -16.99 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -4.99 Total: -91.50 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -61.06 3.37 -57.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051496.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.315 kcal (2) G-P(sol) polarization free energy of solvation -61.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds