Wall clock time and date at job start Mon Mar 30 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36057 * 116.99873 * 2 1 4 4 C 1.39097 * 120.08032 * 270.02937 * 3 2 1 5 5 O 1.35993 * 120.05848 * 359.97438 * 4 3 2 6 6 C 1.38583 * 119.88009 * 179.72749 * 4 3 2 7 7 C 1.38257 * 120.03929 * 0.51915 * 6 4 3 8 8 C 1.50696 * 119.92618 * 179.72977 * 7 6 4 9 9 C 1.52998 * 109.47488 * 183.95677 * 8 7 6 10 10 C 1.52994 * 109.47097 * 63.95467 * 8 7 6 11 11 C 1.50700 * 109.46950 * 303.95825 * 8 7 6 12 12 H 1.08007 * 120.00008 * 0.04044 * 11 8 7 13 13 C 1.37884 * 120.00255 * 179.76538 * 11 8 7 14 14 N 1.31510 * 119.99657 * 0.27512 * 13 11 8 15 15 Si 1.86794 * 119.99927 * 180.27276 * 13 11 8 16 16 H 1.48504 * 109.47029 * 90.00426 * 15 13 11 17 17 H 1.48499 * 109.47199 * 210.00022 * 15 13 11 18 18 H 1.48497 * 109.47541 * 329.99982 * 15 13 11 19 19 C 1.38228 * 120.15714 * 359.45357 * 7 6 4 20 20 C 1.38454 * 120.11946 * 0.29580 * 19 7 6 21 21 F 1.35100 * 120.01971 * 179.97438 * 20 19 7 22 22 H 1.09003 * 109.47593 * 299.99996 * 1 2 3 23 23 H 1.09008 * 109.47385 * 59.99929 * 1 2 3 24 24 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 25 25 H 0.96699 * 113.99985 * 90.01045 * 5 4 3 26 26 H 1.08001 * 119.98389 * 180.24359 * 6 4 3 27 27 H 1.09000 * 109.47271 * 179.97438 * 9 8 7 28 28 H 1.08995 * 109.47333 * 299.99504 * 9 8 7 29 29 H 1.09003 * 109.46830 * 60.00049 * 9 8 7 30 30 H 1.09002 * 109.47298 * 299.99976 * 10 8 7 31 31 H 1.08995 * 109.47693 * 60.00459 * 10 8 7 32 32 H 1.08999 * 109.47479 * 180.02562 * 10 8 7 33 33 H 0.96997 * 119.99679 * 179.97438 * 14 13 11 34 34 H 1.07993 * 119.93993 * 180.27813 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 2.3626 1.8338 -1.2036 5 8 2.0551 1.2305 -2.3830 6 6 2.9866 3.0711 -1.1988 7 6 3.3041 3.6815 0.0004 8 6 3.9881 5.0243 0.0027 9 6 4.3136 5.4285 1.4420 10 6 3.0626 6.0691 -0.6236 11 6 5.2633 4.9397 -0.7959 12 1 5.5494 4.0070 -1.2594 13 6 6.0620 6.0544 -0.9397 14 7 5.7136 7.1901 -0.3754 15 14 7.6387 5.9514 -1.9360 16 1 7.3501 6.2813 -3.3549 17 1 8.6298 6.9161 -1.3953 18 1 8.1897 4.5752 -1.8500 19 6 2.9904 3.0656 1.1975 20 6 2.3622 1.8317 1.2004 21 9 2.0570 1.2314 2.3715 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.1790 1.4569 -2.7239 26 1 3.2291 3.5570 -2.1324 27 1 4.8088 6.3995 1.4435 28 1 3.3913 5.4898 2.0196 29 1 4.9730 4.6840 1.8881 30 1 2.8307 5.7812 -1.6490 31 1 2.1402 6.1304 -0.0461 32 1 3.5575 7.0403 -0.6224 33 1 6.2756 7.9742 -0.4763 34 1 3.2359 3.5476 2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260051909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:31 Heat of formation + Delta-G solvation = -104.765046 kcal Electronic energy + Delta-G solvation = -19209.706994 eV Core-core repulsion = 16022.819013 eV Total energy + Delta-G solvation = -3186.887981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.54494 -39.90597 -37.72533 -36.85854 -34.50123 -31.42379 -29.57988 -28.64453 -26.45738 -25.84684 -25.25434 -22.48052 -22.11758 -19.59637 -18.02853 -17.43407 -16.61478 -16.37512 -15.73999 -15.46589 -14.98524 -14.73878 -14.32860 -14.18217 -14.11643 -13.28620 -12.87210 -12.34299 -12.08312 -11.67695 -11.52059 -11.36149 -11.28165 -10.96826 -10.90378 -10.64835 -10.51759 -10.23191 -9.76842 -9.70869 -9.53713 -8.98563 -8.44286 -8.25226 -7.93712 -6.07899 -4.18527 1.44725 1.51203 3.25535 3.33065 3.37639 3.67799 4.00402 4.15759 4.37028 4.82925 5.18578 5.19665 5.27991 5.41266 5.51995 5.54774 5.85534 5.94099 6.17781 6.43286 6.55748 6.60657 6.70813 6.85536 6.86816 7.05292 7.14327 7.24062 7.43451 7.49391 7.65102 7.91649 7.95619 8.05584 8.29765 8.81561 9.47548 10.93301 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.006517 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.266821 B = 4295.712732 C = 4717.379447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.321 6.321 3 C 0.002 3.998 4 C 0.109 3.891 5 O -0.485 6.485 6 C -0.132 4.132 7 C 0.014 3.986 8 C 0.095 3.905 9 C -0.137 4.137 10 C -0.127 4.127 11 C -0.505 4.505 12 H 0.059 0.941 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.163 4.163 20 C 0.090 3.910 21 F -0.139 7.139 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.382 0.618 26 H 0.142 0.858 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.011 0.989 32 H 0.090 0.910 33 H 0.261 0.739 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.588 -6.686 0.144 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.237 6.237 3 C -0.043 4.043 4 C 0.064 3.936 5 O -0.294 6.294 6 C -0.150 4.150 7 C 0.014 3.986 8 C 0.094 3.906 9 C -0.194 4.194 10 C -0.185 4.185 11 C -0.543 4.543 12 H 0.078 0.922 13 C -0.134 4.134 14 N -0.523 5.523 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.181 4.181 20 C 0.071 3.929 21 F -0.118 7.118 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.110 0.890 25 H 0.237 0.763 26 H 0.160 0.840 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.888 -6.950 0.266 11.286 hybrid contribution 0.171 0.109 -0.384 0.435 sum -8.717 -6.840 -0.118 11.081 Atomic orbital electron populations 1.22963 0.80148 1.02846 1.00211 1.86164 1.19207 1.24126 1.94244 1.18786 1.04788 0.89522 0.91206 1.18511 0.99859 0.91269 0.83975 1.84895 1.38718 1.70574 1.35230 1.21408 1.00258 0.93051 1.00308 1.20519 0.90363 0.97619 0.90126 1.17338 0.93195 0.85376 0.94649 1.21937 0.97960 1.03802 0.95714 1.21822 0.96127 1.03083 0.97472 1.21045 1.04782 0.96623 1.31848 0.92228 1.24889 0.97788 0.95277 0.95460 1.69795 1.38016 1.00734 1.43751 0.86558 0.83053 0.78033 0.80224 1.20617 1.21178 1.19849 1.21330 1.02053 0.93686 1.01052 1.17931 1.02148 0.92682 0.80171 1.91442 1.91324 1.83329 1.45697 0.93790 0.94017 0.89030 0.76337 0.84031 0.89221 0.96701 0.94975 0.95144 0.96981 0.89101 0.92838 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.13 101.05 1.13 1.52 16 2 O -0.32 -5.40 10.07 -34.44 -0.35 -5.75 16 3 C 0.00 0.03 5.74 -39.09 -0.22 -0.19 16 4 C 0.11 1.93 6.72 -39.14 -0.26 1.67 16 5 O -0.49 -7.50 13.29 -34.24 -0.46 -7.95 16 6 C -0.13 -2.52 8.54 -39.45 -0.34 -2.86 16 7 C 0.01 0.29 4.72 -104.62 -0.49 -0.21 16 8 C 0.09 2.15 0.58 -156.82 -0.09 2.06 16 9 C -0.14 -3.05 6.92 37.16 0.26 -2.79 16 10 C -0.13 -2.81 8.10 37.15 0.30 -2.51 16 11 C -0.51 -12.82 7.58 -34.44 -0.26 -13.08 16 12 H 0.06 1.55 7.48 -52.48 -0.39 1.16 16 13 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 14 N -0.88 -22.99 9.35 55.43 0.52 -22.47 16 15 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.16 -3.11 8.96 -39.51 -0.35 -3.46 16 20 C 0.09 1.67 7.31 -39.33 -0.29 1.39 16 21 F -0.14 -2.51 17.11 2.25 0.04 -2.47 16 22 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.38 3.82 9.06 45.56 0.41 4.24 16 26 H 0.14 2.72 7.71 -52.49 -0.40 2.31 16 27 H 0.09 2.20 6.08 -51.93 -0.32 1.88 16 28 H 0.01 0.28 7.31 -51.93 -0.38 -0.09 16 29 H 0.03 0.70 7.71 -51.93 -0.40 0.30 16 30 H 0.03 0.63 7.62 -51.93 -0.40 0.24 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 33 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.14 2.62 5.88 -52.49 -0.31 2.31 16 LS Contribution 287.92 15.07 4.34 4.34 Total: -1.00 -28.02 287.92 -4.97 -32.99 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.32 Total: 2.80 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.72 Total: -16.84 kcal Atomic # 7 Polarization: -22.99 SS G_CDS: 0.52 Total: -22.47 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.80 Total: -13.70 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.02 -4.97 -32.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.777 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds