Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36057 * 116.99873 * 2 1 4 4 C 1.39097 * 120.08032 * 270.02937 * 3 2 1 5 5 O 1.35993 * 120.05848 * 359.97438 * 4 3 2 6 6 C 1.38583 * 119.88009 * 179.72749 * 4 3 2 7 7 C 1.38257 * 120.03929 * 0.51915 * 6 4 3 8 8 C 1.50696 * 119.92618 * 179.72977 * 7 6 4 9 9 C 1.52998 * 109.47488 * 183.95677 * 8 7 6 10 10 C 1.52994 * 109.47097 * 63.95467 * 8 7 6 11 11 C 1.50700 * 109.46950 * 303.95825 * 8 7 6 12 12 H 1.08007 * 120.00008 * 0.04044 * 11 8 7 13 13 C 1.37884 * 120.00255 * 179.76538 * 11 8 7 14 14 N 1.31510 * 119.99657 * 0.27512 * 13 11 8 15 15 Si 1.86794 * 119.99927 * 180.27276 * 13 11 8 16 16 H 1.48504 * 109.47029 * 90.00426 * 15 13 11 17 17 H 1.48499 * 109.47199 * 210.00022 * 15 13 11 18 18 H 1.48497 * 109.47541 * 329.99982 * 15 13 11 19 19 C 1.38228 * 120.15714 * 359.45357 * 7 6 4 20 20 C 1.38454 * 120.11946 * 0.29580 * 19 7 6 21 21 F 1.35100 * 120.01971 * 179.97438 * 20 19 7 22 22 H 1.09003 * 109.47593 * 299.99996 * 1 2 3 23 23 H 1.09008 * 109.47385 * 59.99929 * 1 2 3 24 24 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 25 25 H 0.96699 * 113.99985 * 90.01045 * 5 4 3 26 26 H 1.08001 * 119.98389 * 180.24359 * 6 4 3 27 27 H 1.09000 * 109.47271 * 179.97438 * 9 8 7 28 28 H 1.08995 * 109.47333 * 299.99504 * 9 8 7 29 29 H 1.09003 * 109.46830 * 60.00049 * 9 8 7 30 30 H 1.09002 * 109.47298 * 299.99976 * 10 8 7 31 31 H 1.08995 * 109.47693 * 60.00459 * 10 8 7 32 32 H 1.08999 * 109.47479 * 180.02562 * 10 8 7 33 33 H 0.96997 * 119.99679 * 179.97438 * 14 13 11 34 34 H 1.07993 * 119.93993 * 180.27813 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 2.3626 1.8338 -1.2036 5 8 2.0551 1.2305 -2.3830 6 6 2.9866 3.0711 -1.1988 7 6 3.3041 3.6815 0.0004 8 6 3.9881 5.0243 0.0027 9 6 4.3136 5.4285 1.4420 10 6 3.0626 6.0691 -0.6236 11 6 5.2633 4.9397 -0.7959 12 1 5.5494 4.0070 -1.2594 13 6 6.0620 6.0544 -0.9397 14 7 5.7136 7.1901 -0.3754 15 14 7.6387 5.9514 -1.9360 16 1 7.3501 6.2813 -3.3549 17 1 8.6298 6.9161 -1.3953 18 1 8.1897 4.5752 -1.8500 19 6 2.9904 3.0656 1.1975 20 6 2.3622 1.8317 1.2004 21 9 2.0570 1.2314 2.3715 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.1790 1.4569 -2.7239 26 1 3.2291 3.5570 -2.1324 27 1 4.8088 6.3995 1.4435 28 1 3.3913 5.4898 2.0196 29 1 4.9730 4.6840 1.8881 30 1 2.8307 5.7812 -1.6490 31 1 2.1402 6.1304 -0.0461 32 1 3.5575 7.0403 -0.6224 33 1 6.2756 7.9742 -0.4763 34 1 3.2359 3.5476 2.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260051909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = -121.309229 kcal Electronic energy + Delta-G solvation = -19210.424404 eV Core-core repulsion = 16022.819013 eV Total energy + Delta-G solvation = -3187.605391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.96228 -41.28174 -39.15241 -38.16240 -36.13546 -33.23920 -31.03325 -30.02100 -27.66527 -27.50888 -27.17220 -23.96726 -23.56287 -21.20385 -19.41426 -18.79919 -18.13917 -17.84097 -17.27192 -16.95153 -16.70263 -16.05590 -15.74357 -15.48146 -15.37074 -14.94140 -14.52783 -13.77875 -13.65331 -13.22985 -13.04816 -12.97524 -12.72983 -12.70385 -12.46381 -12.27577 -12.18230 -12.04551 -11.52060 -11.29111 -10.89978 -10.79615 -10.36709 -9.66964 -9.41877 -8.01048 -6.16574 0.04214 0.08241 1.43420 1.47308 1.54922 2.33239 2.48456 2.67810 2.84850 3.22633 3.45541 3.93230 4.00359 4.37835 4.40731 4.42251 4.53216 4.73025 4.75090 4.80331 4.88333 4.98189 5.10385 5.17003 5.25823 5.38933 5.52170 5.63800 5.70688 5.73250 6.13384 6.20118 6.29833 6.42789 6.80521 6.86958 7.50927 8.97804 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029152 B = 0.006517 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.266821 B = 4295.712732 C = 4717.379447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.340 6.340 3 C 0.009 3.991 4 C 0.120 3.880 5 O -0.489 6.489 6 C -0.137 4.137 7 C -0.004 4.004 8 C 0.089 3.911 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.517 4.517 12 H 0.047 0.953 13 C 0.030 3.970 14 N -0.900 5.900 15 Si 0.942 3.058 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.278 1.278 19 C -0.164 4.164 20 C 0.085 3.915 21 F -0.138 7.138 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.408 0.592 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.261 0.739 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 -7.911 -0.271 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C -0.036 4.036 4 C 0.075 3.925 5 O -0.302 6.302 6 C -0.155 4.155 7 C -0.004 4.004 8 C 0.089 3.911 9 C -0.186 4.186 10 C -0.177 4.177 11 C -0.555 4.555 12 H 0.065 0.935 13 C -0.170 4.170 14 N -0.539 5.539 15 Si 0.769 3.231 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.203 1.203 19 C -0.182 4.182 20 C 0.065 3.935 21 F -0.116 7.116 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.136 0.864 25 H 0.267 0.733 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.015 -8.174 -0.159 12.929 hybrid contribution 0.407 0.376 -0.283 0.622 sum -9.608 -7.799 -0.443 12.383 Atomic orbital electron populations 1.23286 0.77308 1.05032 1.01293 1.86113 1.21893 1.23366 1.94307 1.18854 1.04260 0.89548 0.90972 1.18354 0.99031 0.90468 0.84687 1.84830 1.40869 1.70239 1.34246 1.21361 1.00705 0.93833 0.99624 1.20272 0.91888 0.97080 0.91204 1.17293 0.92604 0.87005 0.94242 1.21808 0.98587 1.02136 0.96087 1.21680 0.96458 1.01567 0.97954 1.21255 1.06109 0.96021 1.32094 0.93493 1.25436 0.99947 0.95239 0.96384 1.69906 1.38618 1.00945 1.44392 0.85803 0.80497 0.77525 0.79268 1.20251 1.21035 1.20309 1.21285 1.02167 0.94061 1.00719 1.17930 1.02361 0.92636 0.80546 1.91442 1.91309 1.83235 1.45634 0.93639 0.92036 0.86400 0.73311 0.84570 0.91651 0.94582 0.95416 0.94906 0.95269 0.91534 0.92978 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 11.13 113.37 1.26 1.76 16 2 O -0.34 -10.53 10.07 -80.31 -0.81 -11.34 16 3 C 0.01 0.30 5.74 22.59 0.13 0.43 16 4 C 0.12 4.01 6.72 22.56 0.15 4.16 16 5 O -0.49 -13.77 13.29 -79.59 -1.06 -14.83 16 6 C -0.14 -5.09 8.54 22.36 0.19 -4.90 16 7 C 0.00 -0.16 4.72 -19.86 -0.09 -0.26 16 8 C 0.09 4.03 0.58 -53.68 -0.03 4.00 16 9 C -0.13 -5.74 6.92 71.98 0.50 -5.24 16 10 C -0.12 -5.22 8.10 71.98 0.58 -4.64 16 11 C -0.52 -26.41 7.58 25.60 0.19 -26.21 16 12 H 0.05 2.46 7.48 -2.91 -0.02 2.44 16 13 C 0.03 1.53 5.15 84.66 0.44 1.96 16 14 N -0.90 -47.23 9.35 21.45 0.20 -47.03 16 15 Si 0.94 41.93 29.54 68.60 2.03 43.96 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 C -0.16 -6.10 8.96 22.32 0.20 -5.90 16 20 C 0.09 3.01 7.31 22.44 0.16 3.18 16 21 F -0.14 -4.74 17.11 44.97 0.77 -3.97 16 22 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.41 6.79 9.06 -74.06 -0.67 6.12 16 26 H 0.14 5.16 7.71 -2.91 -0.02 5.13 16 27 H 0.06 3.23 6.08 -2.39 -0.01 3.22 16 28 H 0.04 1.40 7.31 -2.39 -0.02 1.38 16 29 H 0.03 1.20 7.71 -2.39 -0.02 1.18 16 30 H 0.03 1.36 7.62 -2.39 -0.02 1.35 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 3.25 6.06 -2.39 -0.01 3.23 16 33 H 0.26 13.21 8.31 -92.71 -0.77 12.43 16 34 H 0.15 5.24 5.88 -2.91 -0.02 5.22 16 Total: -1.00 -58.57 287.92 5.27 -53.30 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.46 Total: 11.55 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.68 Total: -31.65 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.20 Total: -47.03 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.87 Total: -26.16 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.77 Total: -3.97 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -58.57 5.27 -53.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.012 kcal (2) G-P(sol) polarization free energy of solvation -58.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds