Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38268 * 119.97637 * 2 1 4 4 C 1.38220 * 120.15422 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.93985 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47070 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.47419 * 240.00313 * 5 4 3 8 8 C 1.50700 * 109.47266 * 119.99803 * 5 4 3 9 9 H 1.07999 * 119.99988 * 0.02562 * 8 5 4 10 10 C 1.37885 * 120.00047 * 180.02562 * 8 5 4 11 11 N 1.31518 * 119.99792 * 359.72305 * 10 8 5 12 12 Si 1.86795 * 120.00009 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47163 * 59.99902 * 12 10 8 14 14 H 1.48495 * 109.47159 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47290 * 299.99897 * 12 10 8 16 16 C 1.38457 * 120.12476 * 0.23149 * 4 3 2 17 17 F 1.35091 * 120.02248 * 179.72470 * 16 4 3 18 18 C 1.38724 * 119.95632 * 359.48642 * 16 4 3 19 19 O 1.36049 * 120.07618 * 180.25676 * 18 16 4 20 20 C 1.38574 * 119.98422 * 180.02562 * 2 1 3 21 21 O 1.35996 * 120.05920 * 359.96296 * 20 2 1 22 22 H 1.08999 * 109.47075 * 90.00156 * 1 2 3 23 23 H 1.09000 * 109.47159 * 210.00624 * 1 2 3 24 24 H 1.08999 * 109.47275 * 330.00078 * 1 2 3 25 25 H 1.07998 * 119.92455 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47453 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.47248 * 300.00354 * 6 5 4 28 28 H 1.09005 * 109.46932 * 60.00004 * 6 5 4 29 29 H 1.09002 * 109.46768 * 299.99449 * 7 5 4 30 30 H 1.08996 * 109.46948 * 59.99616 * 7 5 4 31 31 H 1.08996 * 109.46989 * 180.02562 * 7 5 4 32 32 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 33 33 H 0.96706 * 113.99456 * 270.27841 * 19 18 16 34 34 H 0.96691 * 114.00596 * 89.99371 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5800 1.2020 -0.0005 5 6 4.3281 2.5102 -0.0011 6 6 3.3290 3.6690 -0.0016 7 6 5.2069 2.5947 -1.2507 8 6 5.1946 2.5940 1.2290 9 1 5.2031 1.7810 1.9399 10 6 5.9766 3.7085 1.4469 11 7 5.9703 4.6962 0.5784 12 14 7.0512 3.8120 2.9713 13 1 8.0213 2.6877 2.9703 14 1 7.7882 5.1012 2.9708 15 1 6.1987 3.7292 4.1845 16 6 4.2786 0.0066 -0.0059 17 9 5.6295 0.0132 -0.0120 18 6 3.5905 -1.1979 0.0000 19 8 4.2745 -2.3739 0.0000 20 6 2.1995 -1.2003 -0.0005 21 8 1.5204 -2.3786 -0.0003 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6562 2.1321 0.0004 26 1 3.8700 4.6152 -0.0025 27 1 2.7026 3.6082 -0.8915 28 1 2.7026 3.6090 0.8884 29 1 5.9187 1.7692 -1.2508 30 1 4.5801 2.5342 -2.1404 31 1 5.7482 3.5407 -1.2509 32 1 6.5202 5.4804 0.7320 33 1 4.4722 -2.7139 -0.8835 34 1 1.3234 -2.7192 -0.8835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260051952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -113.256041 kcal Electronic energy + Delta-G solvation = -19556.987785 eV Core-core repulsion = 16369.731606 eV Total energy + Delta-G solvation = -3187.256178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.03698 -39.84500 -37.23484 -36.70822 -34.70760 -31.81347 -30.81492 -28.02556 -26.55941 -25.52511 -25.14533 -22.58219 -21.31541 -19.16252 -18.45107 -17.31679 -16.79939 -16.38164 -15.55197 -15.10495 -14.85049 -14.25621 -13.99324 -13.72180 -13.28763 -13.11585 -12.74455 -12.47375 -12.01476 -11.83191 -11.63364 -11.30019 -10.99864 -10.93974 -10.83875 -10.64029 -10.49172 -10.26178 -10.07038 -9.64443 -9.40475 -8.95532 -8.36214 -8.11398 -7.73711 -6.00247 -4.09471 1.49218 1.56830 3.33042 3.36241 3.41471 3.84995 4.20396 4.33200 4.43373 5.07754 5.20259 5.27593 5.35132 5.60544 5.72371 5.85974 5.96497 6.15275 6.38035 6.44473 6.64132 6.69419 6.71034 6.85974 6.89498 7.07527 7.24551 7.28864 7.53784 7.56929 7.71790 7.98099 8.01614 8.11257 8.36745 8.88362 9.55302 11.01144 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.007677 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.016011 B = 3646.315666 C = 4098.475533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.114 4.114 3 C -0.099 4.099 4 C -0.052 4.052 5 C 0.099 3.901 6 C -0.133 4.133 7 C -0.134 4.134 8 C -0.497 4.497 9 H 0.054 0.946 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.094 3.906 17 F -0.118 7.118 18 C 0.037 3.963 19 O -0.480 6.480 20 C 0.075 3.925 21 O -0.484 6.484 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.140 0.860 26 H 0.089 0.911 27 H 0.013 0.987 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.008 0.992 31 H 0.090 0.910 32 H 0.261 0.739 33 H 0.379 0.621 34 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 -8.075 -5.359 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 C -0.117 4.117 4 C -0.053 4.053 5 C 0.098 3.902 6 C -0.191 4.191 7 C -0.192 4.192 8 C -0.535 4.535 9 H 0.073 0.927 10 C -0.134 4.134 11 N -0.526 5.526 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.074 3.926 17 F -0.096 7.096 18 C -0.009 4.009 19 O -0.289 6.289 20 C 0.030 3.970 21 O -0.292 6.292 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.157 0.843 26 H 0.108 0.892 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.233 0.767 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.107 -7.780 -4.150 11.978 hybrid contribution 0.925 -0.184 -0.141 0.953 sum -7.182 -7.964 -4.291 11.551 Atomic orbital electron populations 1.20613 0.90690 1.02992 1.01879 1.20089 0.96590 0.92001 1.02796 1.21006 0.93233 0.97384 1.00070 1.20833 0.93698 0.96297 0.94503 1.17247 0.91929 0.85363 0.95615 1.21905 0.97568 1.03003 0.96579 1.21886 0.99084 1.03872 0.94327 1.20919 1.24055 1.03169 1.05384 0.92731 1.24846 0.96479 0.95510 0.96517 1.69788 1.40364 1.07419 1.35047 0.86631 0.80697 0.77227 0.83379 1.20192 1.21234 1.20275 1.17786 0.77979 0.92626 1.04224 1.91489 1.27707 1.97055 1.93330 1.18727 0.89655 0.84784 1.07765 1.84960 1.75832 1.35571 1.32505 1.18074 0.87987 0.85335 1.05637 1.84892 1.75858 1.36024 1.32432 0.91647 0.91222 0.91393 0.84260 0.89225 0.96755 0.95022 0.94512 0.97281 0.89117 0.92886 0.76709 0.76820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.79 36.01 0.35 -0.93 16 2 C -0.11 -1.83 5.89 -104.49 -0.62 -2.44 16 3 C -0.10 -1.81 8.62 -39.58 -0.34 -2.15 16 4 C -0.05 -1.12 4.72 -104.55 -0.49 -1.62 16 5 C 0.10 2.37 0.49 -156.81 -0.08 2.29 16 6 C -0.13 -3.01 6.91 37.16 0.26 -2.76 16 7 C -0.13 -3.19 8.04 37.16 0.30 -2.89 16 8 C -0.50 -13.43 7.05 -34.44 -0.24 -13.68 16 9 H 0.05 1.54 7.61 -52.49 -0.40 1.14 16 10 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 11 N -0.89 -24.00 9.35 55.43 0.52 -23.48 16 12 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 C 0.09 2.00 6.70 -39.32 -0.26 1.73 16 17 F -0.12 -2.73 14.21 2.25 0.03 -2.69 16 18 C 0.04 0.68 6.72 -39.08 -0.26 0.42 16 19 O -0.48 -8.03 13.15 -34.42 -0.45 -8.48 16 20 C 0.07 1.23 6.69 -39.14 -0.26 0.97 16 21 O -0.48 -6.69 12.33 -34.25 -0.42 -7.11 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 24 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 25 H 0.14 2.37 5.88 -52.49 -0.31 2.07 16 26 H 0.09 2.24 6.08 -51.93 -0.32 1.92 16 27 H 0.01 0.27 7.51 -51.93 -0.39 -0.12 16 28 H 0.03 0.69 7.51 -51.93 -0.39 0.30 16 29 H 0.04 0.87 6.28 -51.93 -0.33 0.55 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.38 4.21 9.07 45.56 0.41 4.62 16 34 H 0.38 3.19 9.06 45.56 0.41 3.60 16 LS Contribution 281.92 15.07 4.25 4.25 Total: -1.00 -30.73 281.92 -5.25 -35.98 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -2.41 Total: 4.46 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.74 Total: -19.32 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.52 Total: -23.48 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.87 Total: -15.60 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.03 Total: -2.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.73 -5.25 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.276 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds