Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38268 * 119.97637 * 2 1 4 4 C 1.38220 * 120.15422 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.93985 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47070 * 359.97438 * 5 4 3 7 7 C 1.53002 * 109.47419 * 240.00313 * 5 4 3 8 8 C 1.50700 * 109.47266 * 119.99803 * 5 4 3 9 9 H 1.07999 * 119.99988 * 0.02562 * 8 5 4 10 10 C 1.37885 * 120.00047 * 180.02562 * 8 5 4 11 11 N 1.31518 * 119.99792 * 359.72305 * 10 8 5 12 12 Si 1.86795 * 120.00009 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47163 * 59.99902 * 12 10 8 14 14 H 1.48495 * 109.47159 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47290 * 299.99897 * 12 10 8 16 16 C 1.38457 * 120.12476 * 0.23149 * 4 3 2 17 17 F 1.35091 * 120.02248 * 179.72470 * 16 4 3 18 18 C 1.38724 * 119.95632 * 359.48642 * 16 4 3 19 19 O 1.36049 * 120.07618 * 180.25676 * 18 16 4 20 20 C 1.38574 * 119.98422 * 180.02562 * 2 1 3 21 21 O 1.35996 * 120.05920 * 359.96296 * 20 2 1 22 22 H 1.08999 * 109.47075 * 90.00156 * 1 2 3 23 23 H 1.09000 * 109.47159 * 210.00624 * 1 2 3 24 24 H 1.08999 * 109.47275 * 330.00078 * 1 2 3 25 25 H 1.07998 * 119.92455 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47453 * 180.02562 * 6 5 4 27 27 H 1.08996 * 109.47248 * 300.00354 * 6 5 4 28 28 H 1.09005 * 109.46932 * 60.00004 * 6 5 4 29 29 H 1.09002 * 109.46768 * 299.99449 * 7 5 4 30 30 H 1.08996 * 109.46948 * 59.99616 * 7 5 4 31 31 H 1.08996 * 109.46989 * 180.02562 * 7 5 4 32 32 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 33 33 H 0.96706 * 113.99456 * 270.27841 * 19 18 16 34 34 H 0.96691 * 114.00596 * 89.99371 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5800 1.2020 -0.0005 5 6 4.3281 2.5102 -0.0011 6 6 3.3290 3.6690 -0.0016 7 6 5.2069 2.5947 -1.2507 8 6 5.1946 2.5940 1.2290 9 1 5.2031 1.7810 1.9399 10 6 5.9766 3.7085 1.4469 11 7 5.9703 4.6962 0.5784 12 14 7.0512 3.8120 2.9713 13 1 8.0213 2.6877 2.9703 14 1 7.7882 5.1012 2.9708 15 1 6.1987 3.7292 4.1845 16 6 4.2786 0.0066 -0.0059 17 9 5.6295 0.0132 -0.0120 18 6 3.5905 -1.1979 0.0000 19 8 4.2745 -2.3739 0.0000 20 6 2.1995 -1.2003 -0.0005 21 8 1.5204 -2.3786 -0.0003 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6562 2.1321 0.0004 26 1 3.8700 4.6152 -0.0025 27 1 2.7026 3.6082 -0.8915 28 1 2.7026 3.6090 0.8884 29 1 5.9187 1.7692 -1.2508 30 1 4.5801 2.5342 -2.1404 31 1 5.7482 3.5407 -1.2509 32 1 6.5202 5.4804 0.7320 33 1 4.4722 -2.7139 -0.8835 34 1 1.3234 -2.7192 -0.8835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260051952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -134.570387 kcal Electronic energy + Delta-G solvation = -19557.912044 eV Core-core repulsion = 16369.731606 eV Total energy + Delta-G solvation = -3188.180438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.67313 -41.17591 -38.74757 -37.94833 -36.28878 -33.51438 -32.30214 -29.51619 -28.05173 -27.30220 -26.91296 -24.08076 -22.71309 -20.82479 -19.72832 -18.71569 -18.38844 -17.98418 -17.21113 -16.65557 -16.59979 -15.70903 -15.39465 -15.26086 -14.98514 -14.46523 -14.06024 -13.83932 -13.58864 -13.26661 -13.18182 -12.94156 -12.83652 -12.63427 -12.46624 -12.33054 -12.23316 -12.01453 -11.53099 -11.45628 -11.04023 -10.83919 -10.38934 -9.50226 -9.19424 -8.03520 -6.18060 0.10951 0.19291 1.38683 1.40302 1.47394 2.39160 2.52535 2.89316 3.15979 3.20042 3.72927 3.95227 4.00142 4.27164 4.59704 4.76752 4.82618 4.85516 4.89393 4.92497 5.03526 5.10378 5.15675 5.32194 5.39060 5.41091 5.49977 5.63310 5.68899 5.84987 6.10553 6.20454 6.40762 6.57434 6.82548 6.92595 7.47730 8.94970 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.007677 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.016011 B = 3646.315666 C = 4098.475533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.102 4.102 3 C -0.102 4.102 4 C -0.079 4.079 5 C 0.091 3.909 6 C -0.122 4.122 7 C -0.124 4.124 8 C -0.511 4.511 9 H 0.031 0.969 10 C 0.029 3.971 11 N -0.900 5.900 12 Si 0.938 3.062 13 H -0.284 1.284 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.058 3.942 17 F -0.141 7.141 18 C 0.038 3.962 19 O -0.491 6.491 20 C 0.089 3.911 21 O -0.484 6.484 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.151 0.849 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.261 0.739 33 H 0.403 0.597 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 -9.223 -5.691 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.120 4.120 4 C -0.080 4.080 5 C 0.091 3.909 6 C -0.180 4.180 7 C -0.182 4.182 8 C -0.549 4.549 9 H 0.050 0.950 10 C -0.170 4.170 11 N -0.539 5.539 12 Si 0.765 3.235 13 H -0.210 1.210 14 H -0.202 1.202 15 H -0.200 1.200 16 C 0.038 3.962 17 F -0.120 7.120 18 C -0.009 4.009 19 O -0.303 6.303 20 C 0.043 3.957 21 O -0.296 6.296 22 H 0.111 0.889 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.169 0.831 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.261 0.739 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -10.364 -8.946 -4.516 14.417 hybrid contribution 1.545 0.013 -0.080 1.547 sum -8.819 -8.933 -4.597 13.368 Atomic orbital electron populations 1.20717 0.87402 1.03871 1.03884 1.20460 0.98729 0.90810 1.00272 1.21129 0.91946 0.98953 0.99962 1.20667 0.95008 0.95063 0.97239 1.17190 0.92111 0.87553 0.94032 1.21737 0.97297 1.01030 0.97900 1.21731 0.99027 1.01835 0.95579 1.21088 1.25065 1.02409 1.06339 0.95037 1.25400 0.97510 0.95511 0.98622 1.69890 1.40671 1.07506 1.35788 0.85921 0.79338 0.77142 0.81081 1.20955 1.20215 1.20044 1.18129 0.77237 0.94007 1.06857 1.91413 1.29455 1.97233 1.93901 1.18808 0.90528 0.84303 1.07222 1.84881 1.75880 1.34729 1.34812 1.18061 0.87211 0.86511 1.03901 1.84826 1.75061 1.34792 1.34907 0.88907 0.90414 0.90476 0.83143 0.91852 0.94087 0.94838 0.95786 0.95309 0.91517 0.92916 0.73906 0.73519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.79 71.24 0.70 -1.32 16 2 C -0.10 -2.93 5.89 -19.78 -0.12 -3.05 16 3 C -0.10 -3.54 8.62 22.27 0.19 -3.34 16 4 C -0.08 -3.37 4.72 -19.82 -0.09 -3.47 16 5 C 0.09 4.44 0.49 -53.67 -0.03 4.41 16 6 C -0.12 -5.50 6.91 71.98 0.50 -5.00 16 7 C -0.12 -6.03 8.04 71.98 0.58 -5.45 16 8 C -0.51 -28.36 7.05 25.60 0.18 -28.18 16 9 H 0.03 1.84 7.61 -2.91 -0.02 1.82 16 10 C 0.03 1.59 5.15 84.66 0.44 2.03 16 11 N -0.90 -49.59 9.35 21.45 0.20 -49.39 16 12 Si 0.94 44.67 29.54 68.60 2.03 46.69 16 13 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 16 C 0.06 2.46 6.70 22.44 0.15 2.61 16 17 F -0.14 -6.81 14.21 44.97 0.64 -6.17 16 18 C 0.04 1.34 6.72 22.59 0.15 1.49 16 19 O -0.49 -15.70 13.15 -80.22 -1.06 -16.75 16 20 C 0.09 2.66 6.69 22.56 0.15 2.81 16 21 O -0.48 -11.35 12.33 -79.62 -0.98 -12.33 16 22 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.08 1.45 7.53 -2.39 -0.02 1.43 16 24 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 25 H 0.15 4.76 5.88 -2.91 -0.02 4.74 16 26 H 0.06 3.18 6.08 -2.39 -0.01 3.17 16 27 H 0.04 1.57 7.51 -2.39 -0.02 1.55 16 28 H 0.03 1.44 7.51 -2.38 -0.02 1.42 16 29 H 0.02 1.17 6.28 -2.39 -0.01 1.15 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 3.53 6.06 -2.39 -0.01 3.51 16 32 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.40 8.23 9.07 -74.05 -0.67 7.56 16 34 H 0.41 4.89 9.06 -74.06 -0.67 4.22 16 Total: -1.00 -67.34 281.92 3.44 -63.90 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -0.19 Total: 10.48 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 2.80 Total: -36.44 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.20 Total: -49.39 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -2.04 Total: -29.09 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.64 Total: -6.17 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.34 3.44 -63.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.668 kcal (2) G-P(sol) polarization free energy of solvation -67.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds