Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.36056 * 117.00317 * 2 1 4 4 C 1.38753 * 120.07879 * 89.99581 * 3 2 1 5 5 F 1.35104 * 120.02260 * 0.02562 * 4 3 2 6 6 C 1.38408 * 119.96261 * 180.02562 * 4 3 2 7 7 C 1.38266 * 120.11882 * 0.02562 * 6 4 3 8 8 C 1.38211 * 120.16018 * 0.25134 * 7 6 4 9 9 C 1.50704 * 119.98576 * 179.74392 * 8 7 6 10 10 C 1.52994 * 109.46990 * 125.91119 * 9 8 7 11 11 C 1.52991 * 109.47438 * 245.91562 * 9 8 7 12 12 C 1.50704 * 109.46652 * 5.91541 * 9 8 7 13 13 H 1.07992 * 119.99661 * 243.22541 * 12 9 8 14 14 C 1.37880 * 120.00034 * 63.23280 * 12 9 8 15 15 N 1.31514 * 119.99685 * 182.60486 * 14 12 9 16 16 Si 1.86798 * 119.99866 * 2.59804 * 14 12 9 17 17 H 1.48498 * 109.47024 * 94.66025 * 16 14 12 18 18 H 1.48503 * 109.46949 * 214.65928 * 16 14 12 19 19 H 1.48497 * 109.47410 * 334.65587 * 16 14 12 20 20 C 1.38628 * 120.03747 * 359.49499 * 8 7 6 21 21 O 1.35999 * 120.06391 * 180.22891 * 20 8 7 22 22 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47540 * 299.99927 * 1 2 3 24 24 H 1.09000 * 109.47243 * 60.00517 * 1 2 3 25 25 H 1.08004 * 119.94547 * 179.97438 * 6 4 3 26 26 H 1.07997 * 119.92115 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.47359 * 67.07356 * 10 9 8 28 28 H 1.09001 * 109.47427 * 187.07025 * 10 9 8 29 29 H 1.09003 * 109.47698 * 307.07565 * 10 9 8 30 30 H 1.09005 * 109.47500 * 59.99676 * 11 9 8 31 31 H 1.09001 * 109.47300 * 179.97438 * 11 9 8 32 32 H 1.09005 * 109.47411 * 299.99593 * 11 9 8 33 33 H 0.96999 * 119.99559 * 179.97438 * 15 14 12 34 34 H 0.96704 * 113.99800 * 270.27785 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 2.3623 1.8319 1.2007 5 9 2.0569 1.2316 2.3719 6 6 2.9903 3.0653 1.1979 7 6 3.3033 3.6818 0.0005 8 6 2.9860 3.0717 -1.1984 9 6 3.3238 3.7498 -2.5012 10 6 4.1456 2.7984 -3.3732 11 6 2.0325 4.1238 -3.2314 12 6 4.1243 4.9965 -2.2256 13 1 3.7260 5.9640 -2.4930 14 6 5.3653 4.9019 -1.6323 15 7 6.0417 5.9927 -1.3451 16 14 6.0858 3.2246 -1.2362 17 1 6.9687 2.7900 -2.3483 18 1 6.8753 3.3088 0.0187 19 1 4.9861 2.2416 -1.0641 20 6 2.3618 1.8339 -1.2033 21 8 2.0535 1.2310 -2.3827 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 3.2355 3.5476 2.1326 26 1 3.7929 4.6444 0.0020 27 1 3.5246 1.9555 -3.6764 28 1 4.4962 3.3285 -4.2587 29 1 5.0017 2.4333 -2.8057 30 1 1.4470 4.8016 -2.6101 31 1 2.2769 4.6147 -4.1734 32 1 1.4535 3.2220 -3.4307 33 1 6.9146 5.9261 -0.9274 34 1 1.1773 1.4577 -2.7231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = -83.844009 kcal Electronic energy + Delta-G solvation = -20003.118667 eV Core-core repulsion = 16817.137891 eV Total energy + Delta-G solvation = -3185.980777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.51604 -40.14721 -37.83800 -36.22833 -34.93147 -31.90932 -29.45095 -28.60822 -26.72761 -26.57579 -25.12859 -22.39850 -22.03235 -19.42099 -18.27236 -17.43728 -16.86718 -16.21074 -16.10869 -15.50957 -14.84292 -14.70035 -14.28823 -14.10795 -14.01572 -13.37198 -13.01147 -12.79111 -12.39424 -12.28765 -12.03628 -11.53395 -11.33499 -11.02851 -10.82993 -10.51772 -10.30998 -10.21306 -10.09355 -9.74702 -9.17934 -8.93612 -8.62569 -8.24857 -7.68346 -6.22487 -4.23696 1.44749 1.56170 3.26064 3.38691 3.45137 3.69985 4.04063 4.25994 4.32231 4.89599 5.04660 5.22700 5.29943 5.40601 5.54542 5.59704 5.76041 5.99027 6.03724 6.15602 6.26646 6.32801 6.51256 6.65279 6.69201 6.74200 6.88995 7.03362 7.12380 7.19163 7.38765 7.51389 7.71016 8.06107 8.39167 8.82077 9.39382 10.88271 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.010139 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.421424 B = 2760.890410 C = 3295.711206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.322 6.322 3 C 0.022 3.978 4 C 0.066 3.934 5 F -0.142 7.142 6 C -0.158 4.158 7 C -0.071 4.071 8 C -0.053 4.053 9 C 0.070 3.930 10 C -0.144 4.144 11 C -0.117 4.117 12 C -0.514 4.514 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.891 5.891 16 Si 0.864 3.136 17 H -0.285 1.285 18 H -0.298 1.298 19 H -0.241 1.241 20 C 0.100 3.900 21 O -0.474 6.474 22 H 0.091 0.909 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.135 0.865 26 H 0.168 0.832 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 -7.447 1.529 12.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.239 6.239 3 C -0.023 4.023 4 C 0.047 3.953 5 F -0.121 7.121 6 C -0.177 4.177 7 C -0.088 4.088 8 C -0.054 4.054 9 C 0.069 3.931 10 C -0.201 4.201 11 C -0.174 4.174 12 C -0.552 4.552 13 H 0.098 0.902 14 C -0.124 4.124 15 N -0.528 5.528 16 Si 0.694 3.306 17 H -0.212 1.212 18 H -0.226 1.226 19 H -0.166 1.166 20 C 0.055 3.945 21 O -0.284 6.284 22 H 0.110 0.890 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.153 0.847 26 H 0.185 0.815 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.481 -7.814 1.702 12.403 hybrid contribution 0.005 -0.677 0.501 0.842 sum -9.476 -8.491 2.202 12.913 Atomic orbital electron populations 1.22945 0.79948 1.02857 1.00261 1.86140 1.19302 1.24159 1.94273 1.18916 1.03161 0.88864 0.91313 1.17843 1.04090 0.93177 0.80211 1.91429 1.91535 1.83444 1.45663 1.21240 1.01967 0.94082 1.00448 1.21682 0.95788 1.01726 0.89634 1.21070 0.94267 0.91187 0.98901 1.17570 0.93866 0.94185 0.87437 1.22310 0.99360 0.98801 0.99636 1.21642 0.96762 0.98931 1.00110 1.20895 1.01376 0.92279 1.40636 0.90174 1.25032 0.96583 0.96057 0.94709 1.69899 1.13576 1.27584 1.41725 0.87455 0.80015 0.86000 0.77109 1.21217 1.22611 1.16569 1.18434 1.00843 0.91267 0.83987 1.84941 1.38179 1.70415 1.34866 0.89022 0.93820 0.93889 0.84733 0.81464 0.92574 0.92900 0.94595 0.93493 0.92671 0.95074 0.92379 0.76818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.13 101.05 1.13 1.55 16 2 O -0.32 -5.64 10.07 -34.46 -0.35 -5.99 16 3 C 0.02 0.42 5.74 -39.09 -0.22 0.20 16 4 C 0.07 1.25 7.31 -39.33 -0.29 0.97 16 5 F -0.14 -2.58 17.11 2.25 0.04 -2.54 16 6 C -0.16 -2.96 10.02 -39.51 -0.40 -3.36 16 7 C -0.07 -1.47 6.56 -39.58 -0.26 -1.73 16 8 C -0.05 -1.10 2.54 -104.49 -0.27 -1.36 16 9 C 0.07 1.50 0.48 -156.82 -0.08 1.43 16 10 C -0.14 -3.09 7.33 37.15 0.27 -2.81 16 11 C -0.12 -2.10 8.25 37.15 0.31 -1.79 16 12 C -0.51 -13.09 7.47 -34.44 -0.26 -13.35 16 13 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.08 2.12 4.13 -17.82 -0.07 2.05 16 15 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 16 Si 0.86 21.42 21.97 -169.99 -3.74 17.68 16 17 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 19 H -0.24 -5.83 4.34 56.52 0.25 -5.59 16 20 C 0.10 1.91 6.15 -39.13 -0.24 1.67 16 21 O -0.47 -8.01 9.76 -34.28 -0.33 -8.35 16 22 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 26 H 0.17 3.80 5.45 -52.49 -0.29 3.52 16 27 H 0.06 1.09 5.94 -51.93 -0.31 0.78 16 28 H 0.05 1.11 8.13 -51.93 -0.42 0.68 16 29 H 0.04 0.83 2.92 -51.93 -0.15 0.68 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.46 5.88 -51.93 -0.31 0.15 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.38 4.58 7.74 45.56 0.35 4.93 16 LS Contribution 269.68 15.07 4.06 4.06 Total: -1.00 -29.83 269.68 -3.28 -33.12 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -3.37 Total: 3.29 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.38 Total: -16.55 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.77 Total: -24.74 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.68 Total: -14.33 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -3.74 Total: 17.68 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.83 -3.28 -33.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.725 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds