Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.36056 * 117.00317 * 2 1 4 4 C 1.38753 * 120.07879 * 89.99581 * 3 2 1 5 5 F 1.35104 * 120.02260 * 0.02562 * 4 3 2 6 6 C 1.38408 * 119.96261 * 180.02562 * 4 3 2 7 7 C 1.38266 * 120.11882 * 0.02562 * 6 4 3 8 8 C 1.38211 * 120.16018 * 0.25134 * 7 6 4 9 9 C 1.50704 * 119.98576 * 179.74392 * 8 7 6 10 10 C 1.52994 * 109.46990 * 125.91119 * 9 8 7 11 11 C 1.52991 * 109.47438 * 245.91562 * 9 8 7 12 12 C 1.50704 * 109.46652 * 5.91541 * 9 8 7 13 13 H 1.07992 * 119.99661 * 243.22541 * 12 9 8 14 14 C 1.37880 * 120.00034 * 63.23280 * 12 9 8 15 15 N 1.31514 * 119.99685 * 182.60486 * 14 12 9 16 16 Si 1.86798 * 119.99866 * 2.59804 * 14 12 9 17 17 H 1.48498 * 109.47024 * 94.66025 * 16 14 12 18 18 H 1.48503 * 109.46949 * 214.65928 * 16 14 12 19 19 H 1.48497 * 109.47410 * 334.65587 * 16 14 12 20 20 C 1.38628 * 120.03747 * 359.49499 * 8 7 6 21 21 O 1.35999 * 120.06391 * 180.22891 * 20 8 7 22 22 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47540 * 299.99927 * 1 2 3 24 24 H 1.09000 * 109.47243 * 60.00517 * 1 2 3 25 25 H 1.08004 * 119.94547 * 179.97438 * 6 4 3 26 26 H 1.07997 * 119.92115 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.47359 * 67.07356 * 10 9 8 28 28 H 1.09001 * 109.47427 * 187.07025 * 10 9 8 29 29 H 1.09003 * 109.47698 * 307.07565 * 10 9 8 30 30 H 1.09005 * 109.47500 * 59.99676 * 11 9 8 31 31 H 1.09001 * 109.47300 * 179.97438 * 11 9 8 32 32 H 1.09005 * 109.47411 * 299.99593 * 11 9 8 33 33 H 0.96999 * 119.99559 * 179.97438 * 15 14 12 34 34 H 0.96704 * 113.99800 * 270.27785 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 2.3623 1.8319 1.2007 5 9 2.0569 1.2316 2.3719 6 6 2.9903 3.0653 1.1979 7 6 3.3033 3.6818 0.0005 8 6 2.9860 3.0717 -1.1984 9 6 3.3238 3.7498 -2.5012 10 6 4.1456 2.7984 -3.3732 11 6 2.0325 4.1238 -3.2314 12 6 4.1243 4.9965 -2.2256 13 1 3.7260 5.9640 -2.4930 14 6 5.3653 4.9019 -1.6323 15 7 6.0417 5.9927 -1.3451 16 14 6.0858 3.2246 -1.2362 17 1 6.9687 2.7900 -2.3483 18 1 6.8753 3.3088 0.0187 19 1 4.9861 2.2416 -1.0641 20 6 2.3618 1.8339 -1.2033 21 8 2.0535 1.2310 -2.3827 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 3.2355 3.5476 2.1326 26 1 3.7929 4.6444 0.0020 27 1 3.5246 1.9555 -3.6764 28 1 4.4962 3.3285 -4.2587 29 1 5.0017 2.4333 -2.8057 30 1 1.4470 4.8016 -2.6101 31 1 2.2769 4.6147 -4.1734 32 1 1.4535 3.2220 -3.4307 33 1 6.9146 5.9261 -0.9274 34 1 1.1773 1.4577 -2.7231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260056447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = -104.542268 kcal Electronic energy + Delta-G solvation = -20004.016211 eV Core-core repulsion = 16817.137891 eV Total energy + Delta-G solvation = -3186.878321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94832 -41.60160 -39.20749 -37.62460 -36.53951 -33.89705 -30.83382 -30.10390 -28.16796 -27.87269 -26.99715 -23.91188 -23.49162 -21.09264 -19.70562 -19.01302 -18.30146 -17.88517 -17.51929 -16.88781 -16.69445 -16.00000 -15.64189 -15.57099 -15.35651 -14.93930 -14.87731 -14.51669 -14.01203 -13.81285 -13.34999 -12.97729 -12.82282 -12.50167 -12.38540 -12.13745 -12.01335 -11.96876 -11.73331 -11.24441 -10.96284 -10.70339 -10.54905 -9.68344 -9.23608 -8.32310 -6.32813 -0.00503 0.07879 1.27791 1.38703 1.44812 2.27378 2.34806 2.63905 2.88198 3.04421 3.48359 3.93389 3.99556 4.26035 4.39161 4.41700 4.44211 4.53394 4.63343 4.74298 4.79149 4.85282 4.99482 5.08008 5.09149 5.20035 5.30471 5.47160 5.58515 5.62367 5.72811 5.88745 6.28133 6.37116 6.75454 6.84427 7.32754 8.82658 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024439 B = 0.010139 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.421424 B = 2760.890410 C = 3295.711206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.028 3.972 4 C 0.062 3.938 5 F -0.138 7.138 6 C -0.153 4.153 7 C -0.091 4.091 8 C -0.067 4.067 9 C 0.066 3.934 10 C -0.143 4.143 11 C -0.114 4.114 12 C -0.501 4.501 13 H 0.048 0.952 14 C 0.043 3.957 15 N -0.937 5.937 16 Si 0.910 3.090 17 H -0.293 1.293 18 H -0.309 1.309 19 H -0.227 1.227 20 C 0.109 3.891 21 O -0.477 6.477 22 H 0.118 0.882 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.155 0.845 26 H 0.141 0.859 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.017 0.983 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.264 0.736 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 -9.754 1.280 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.257 6.257 3 C -0.017 4.017 4 C 0.042 3.958 5 F -0.117 7.117 6 C -0.172 4.172 7 C -0.109 4.109 8 C -0.069 4.069 9 C 0.065 3.935 10 C -0.199 4.199 11 C -0.171 4.171 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.155 4.155 15 N -0.577 5.577 16 Si 0.740 3.260 17 H -0.220 1.220 18 H -0.238 1.238 19 H -0.151 1.151 20 C 0.063 3.937 21 O -0.289 6.289 22 H 0.137 0.863 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.172 0.828 26 H 0.159 0.841 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -11.507 -10.136 1.435 15.402 hybrid contribution 0.470 0.008 0.560 0.731 sum -11.037 -10.128 1.995 15.112 Atomic orbital electron populations 1.23278 0.77052 1.05082 1.01356 1.86095 1.22020 1.23254 1.94329 1.18966 1.02707 0.88984 0.91062 1.17893 1.04128 0.93211 0.80566 1.91438 1.91475 1.83322 1.45448 1.21340 1.01168 0.94110 1.00542 1.21445 0.97327 1.01239 0.90862 1.20903 0.95688 0.92256 0.98022 1.17575 0.94902 0.92375 0.88615 1.22282 0.98999 0.99540 0.99123 1.21604 0.95391 1.00666 0.99459 1.21149 1.01209 0.92966 1.38599 0.93348 1.25481 0.97174 0.97792 0.95082 1.70004 1.14204 1.29342 1.44107 0.86744 0.79343 0.83911 0.75956 1.22047 1.23765 1.15108 1.18225 1.00242 0.90392 0.84853 1.84869 1.40126 1.70043 1.33893 0.86342 0.93571 0.91982 0.82779 0.84133 0.90020 0.93177 0.96452 0.93662 0.92802 0.91337 0.92620 0.74052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.13 113.37 1.26 1.79 16 2 O -0.34 -10.65 10.07 -80.28 -0.81 -11.46 16 3 C 0.03 0.97 5.74 22.59 0.13 1.10 16 4 C 0.06 2.18 7.31 22.43 0.16 2.34 16 5 F -0.14 -4.67 17.11 44.97 0.77 -3.90 16 6 C -0.15 -5.49 10.02 22.32 0.22 -5.26 16 7 C -0.09 -3.73 6.56 22.27 0.15 -3.58 16 8 C -0.07 -2.68 2.54 -19.78 -0.05 -2.73 16 9 C 0.07 2.74 0.48 -53.68 -0.03 2.71 16 10 C -0.14 -5.81 7.33 71.98 0.53 -5.28 16 11 C -0.11 -3.81 8.25 71.98 0.59 -3.22 16 12 C -0.50 -25.90 7.47 25.60 0.19 -25.71 16 13 H 0.05 2.76 7.99 -2.91 -0.02 2.74 16 14 C 0.04 2.37 4.13 84.66 0.35 2.72 16 15 N -0.94 -55.52 13.96 21.45 0.30 -55.22 16 16 Si 0.91 44.83 21.97 68.60 1.51 46.34 16 17 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 18 H -0.31 -15.55 7.11 99.48 0.71 -14.85 16 19 H -0.23 -10.62 4.34 99.48 0.43 -10.19 16 20 C 0.11 3.80 6.15 22.56 0.14 3.94 16 21 O -0.48 -13.97 9.76 -79.63 -0.78 -14.74 16 22 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.15 4.76 8.06 -2.91 -0.02 4.73 16 26 H 0.14 6.55 5.45 -2.91 -0.02 6.53 16 27 H 0.08 2.87 5.94 -2.38 -0.01 2.86 16 28 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 29 H 0.02 0.76 2.92 -2.39 -0.01 0.75 16 30 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.74 5.88 -2.38 -0.01 1.73 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.40 7.59 7.74 -74.05 -0.57 7.01 16 Total: -1.00 -64.41 269.68 4.93 -59.48 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.29 Total: 10.67 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 3.65 Total: -31.17 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.30 Total: -55.22 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.58 Total: -26.20 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.77 Total: -3.90 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.51 Total: 46.34 kcal Total: -64.41 4.93 -59.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.058 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds