Wall clock time and date at job start Mon Mar 30 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35947 * 116.99757 * 2 1 4 4 C 1.38753 * 120.03794 * 0.02562 * 3 2 1 5 5 C 1.38173 * 120.06775 * 179.97438 * 4 3 2 6 6 C 1.38221 * 120.14126 * 0.26530 * 5 4 3 7 7 C 1.50699 * 119.96776 * 179.70745 * 6 5 4 8 8 C 1.52996 * 109.47104 * 356.41777 * 7 6 5 9 9 C 1.52998 * 109.46954 * 116.41540 * 7 6 5 10 10 C 1.50698 * 109.47034 * 236.41561 * 7 6 5 11 11 H 1.07998 * 120.00410 * 0.44045 * 10 7 6 12 12 C 1.37878 * 119.99562 * 180.43614 * 10 7 6 13 13 N 1.31513 * 120.00414 * 0.02562 * 12 10 7 14 14 Si 1.86809 * 119.99692 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47054 * 59.99981 * 14 12 10 16 16 H 1.48503 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46744 * 299.99969 * 14 12 10 18 18 C 1.38712 * 120.06442 * 359.45639 * 6 5 4 19 19 O 1.35957 * 120.03219 * 180.24942 * 18 6 5 20 20 C 1.38761 * 120.03298 * 179.97438 * 3 2 1 21 21 F 1.35101 * 120.06802 * 0.02562 * 20 3 2 22 22 H 1.08996 * 109.47345 * 299.99823 * 1 2 3 23 23 H 1.09002 * 109.46888 * 60.00071 * 1 2 3 24 24 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.07994 * 119.96057 * 359.95418 * 4 3 2 26 26 H 1.08002 * 119.92971 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.47206 * 59.99828 * 8 7 6 28 28 H 1.08998 * 109.47304 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.47392 * 299.99919 * 8 7 6 30 30 H 1.09003 * 109.47617 * 60.00251 * 9 7 6 31 31 H 1.08998 * 109.47347 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.47683 * 300.00342 * 9 7 6 33 33 H 0.97001 * 120.00154 * 179.97438 * 13 12 10 34 34 H 0.96702 * 113.99656 * 270.30321 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3755 0.0005 5 6 1.9178 3.6069 0.0011 6 6 3.2979 3.6835 -0.0045 7 6 3.9772 5.0287 -0.0105 8 6 2.9217 6.1326 -0.0994 9 6 4.7849 5.1979 1.2778 10 6 4.9006 5.1197 -1.1980 11 1 4.9816 4.2896 -1.8840 12 6 5.6420 6.2630 -1.4086 13 7 5.5437 7.2738 -0.5729 14 14 6.7861 6.3762 -2.8809 15 1 6.0002 6.2228 -4.1315 16 1 7.4640 7.6975 -2.8806 17 1 7.8041 5.2981 -2.8007 18 6 4.0582 2.5233 0.0008 19 8 5.4157 2.5994 0.0005 20 6 3.4319 1.2848 0.0005 21 9 4.1697 0.1531 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2128 2.3189 0.0002 26 1 1.3280 4.5117 0.0019 27 1 2.2538 6.0667 0.7595 28 1 3.4129 7.1056 -0.1033 29 1 2.3462 6.0121 -1.0172 30 1 5.5370 4.4114 1.3412 31 1 5.2766 6.1706 1.2733 32 1 4.1171 5.1319 2.1368 33 1 6.0656 8.0779 -0.7209 34 1 5.8081 2.6220 -0.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260080898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:02 Heat of formation + Delta-G solvation = -100.891075 kcal Electronic energy + Delta-G solvation = -19463.890595 eV Core-core repulsion = 16277.170602 eV Total energy + Delta-G solvation = -3186.719993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.26360 -39.84074 -38.34683 -35.70888 -34.74186 -31.45384 -29.55929 -28.27894 -26.87640 -25.75955 -25.22142 -22.34926 -21.82572 -19.19128 -18.40442 -16.95935 -16.66273 -16.26071 -15.82692 -15.53867 -14.95163 -14.76026 -14.32934 -13.82407 -13.71053 -13.15852 -12.85169 -12.26578 -11.95804 -11.85403 -11.53245 -11.26113 -11.03880 -10.97072 -10.79059 -10.59244 -10.36202 -10.33430 -10.15896 -9.55840 -9.31954 -8.88313 -8.37028 -8.11083 -7.50799 -6.01575 -4.12208 1.55972 1.79365 3.27581 3.31959 3.33097 3.35178 4.02182 4.38091 4.59540 4.98449 5.10930 5.16606 5.23393 5.28287 5.42983 5.46165 5.74497 5.95205 6.37046 6.49763 6.63277 6.71750 6.74965 6.88539 7.00508 7.11172 7.24375 7.40120 7.56830 7.64278 7.69500 8.07346 8.12747 8.35378 8.40251 8.83556 9.51815 10.99220 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.007023 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.059144 B = 3986.045404 C = 4367.663721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.076 3.924 4 C -0.193 4.193 5 C -0.092 4.092 6 C -0.060 4.060 7 C 0.106 3.894 8 C -0.135 4.135 9 C -0.129 4.129 10 C -0.498 4.498 11 H 0.050 0.950 12 C 0.069 3.931 13 N -0.883 5.883 14 Si 0.890 3.110 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.122 3.878 19 O -0.470 6.470 20 C 0.031 3.969 21 F -0.137 7.137 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.013 0.987 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.004 0.996 33 H 0.261 0.739 34 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 -7.925 0.527 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.031 3.969 4 C -0.212 4.212 5 C -0.110 4.110 6 C -0.061 4.061 7 C 0.106 3.894 8 C -0.192 4.192 9 C -0.187 4.187 10 C -0.536 4.536 11 H 0.068 0.932 12 C -0.133 4.133 13 N -0.521 5.521 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.075 3.925 19 O -0.281 6.281 20 C 0.011 3.989 21 F -0.116 7.116 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.147 0.853 26 H 0.154 0.846 27 H 0.031 0.969 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.124 -7.971 1.159 11.440 hybrid contribution 0.506 -0.038 -1.368 1.459 sum -7.618 -8.009 -0.209 11.055 Atomic orbital electron populations 1.23000 0.78736 1.03455 1.01312 1.86064 1.21042 1.26364 1.89608 1.18651 0.90236 0.85219 1.02794 1.21043 0.99523 0.91645 1.08995 1.21060 0.94428 0.96903 0.98619 1.20949 0.92707 0.97169 0.95275 1.17124 0.92217 0.84720 0.95360 1.21929 0.97240 1.03479 0.96577 1.21841 0.98854 1.03886 0.94073 1.20795 1.23811 1.00638 1.08388 0.93158 1.24858 0.96581 0.95658 0.96191 1.69791 1.41046 1.05208 1.36075 0.86688 0.81044 0.77358 0.83082 1.20448 1.21285 1.20214 1.18011 0.84657 0.88963 1.00864 1.84780 1.14247 1.95489 1.33592 1.17465 0.86181 0.82600 1.12639 1.91420 1.76621 1.48919 1.94614 0.92764 0.92731 0.88594 0.85312 0.84611 0.96851 0.89466 0.95231 0.93653 0.89630 0.97701 0.92876 0.75101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -5.05 10.36 -19.57 -0.20 -5.25 16 3 C 0.08 1.35 6.69 -39.20 -0.26 1.09 16 4 C -0.19 -3.10 9.04 -39.41 -0.36 -3.46 16 5 C -0.09 -1.67 8.97 -39.61 -0.36 -2.03 16 6 C -0.06 -1.27 4.73 -104.45 -0.49 -1.76 16 7 C 0.11 2.47 0.48 -156.82 -0.08 2.39 16 8 C -0.13 -3.02 6.92 37.16 0.26 -2.76 16 9 C -0.13 -3.09 8.06 37.16 0.30 -2.79 16 10 C -0.50 -12.46 6.71 -34.44 -0.23 -12.69 16 11 H 0.05 1.23 6.70 -52.49 -0.35 0.88 16 12 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 13 N -0.88 -23.24 9.35 55.43 0.52 -22.72 16 14 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.12 2.53 6.16 -39.20 -0.24 2.29 16 19 O -0.47 -9.80 10.38 -19.61 -0.20 -10.00 16 20 C 0.03 0.62 7.32 -39.18 -0.29 0.34 16 21 F -0.14 -2.75 16.95 2.25 0.04 -2.72 16 22 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 23 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.13 1.61 6.29 -52.49 -0.33 1.28 16 26 H 0.14 2.28 5.89 -52.49 -0.31 1.97 16 27 H 0.01 0.26 7.34 -51.93 -0.38 -0.12 16 28 H 0.09 2.16 6.11 -51.93 -0.32 1.84 16 29 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 30 H 0.04 1.10 6.41 -51.93 -0.33 0.76 16 31 H 0.09 2.21 6.03 -51.93 -0.31 1.89 16 32 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.39 7.12 8.00 45.56 0.36 7.48 16 LS Contribution 278.30 15.07 4.19 4.19 Total: -1.00 -28.22 278.30 -4.67 -32.89 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.15 Total: 4.94 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.85 Total: -16.41 kcal Atomic # 7 Polarization: -23.24 SS G_CDS: 0.52 Total: -22.72 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.41 Total: -15.25 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.22 -4.67 -32.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260080898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.002 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds