Wall clock time and date at job start Mon Mar 30 2020 06:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35947 * 116.99757 * 2 1 4 4 C 1.38753 * 120.03794 * 0.02562 * 3 2 1 5 5 C 1.38173 * 120.06775 * 179.97438 * 4 3 2 6 6 C 1.38221 * 120.14126 * 0.26530 * 5 4 3 7 7 C 1.50699 * 119.96776 * 179.70745 * 6 5 4 8 8 C 1.52996 * 109.47104 * 356.41777 * 7 6 5 9 9 C 1.52998 * 109.46954 * 116.41540 * 7 6 5 10 10 C 1.50698 * 109.47034 * 236.41561 * 7 6 5 11 11 H 1.07998 * 120.00410 * 0.44045 * 10 7 6 12 12 C 1.37878 * 119.99562 * 180.43614 * 10 7 6 13 13 N 1.31513 * 120.00414 * 0.02562 * 12 10 7 14 14 Si 1.86809 * 119.99692 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47054 * 59.99981 * 14 12 10 16 16 H 1.48503 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46744 * 299.99969 * 14 12 10 18 18 C 1.38712 * 120.06442 * 359.45639 * 6 5 4 19 19 O 1.35957 * 120.03219 * 180.24942 * 18 6 5 20 20 C 1.38761 * 120.03298 * 179.97438 * 3 2 1 21 21 F 1.35101 * 120.06802 * 0.02562 * 20 3 2 22 22 H 1.08996 * 109.47345 * 299.99823 * 1 2 3 23 23 H 1.09002 * 109.46888 * 60.00071 * 1 2 3 24 24 H 1.09001 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.07994 * 119.96057 * 359.95418 * 4 3 2 26 26 H 1.08002 * 119.92971 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.47206 * 59.99828 * 8 7 6 28 28 H 1.08998 * 109.47304 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.47392 * 299.99919 * 8 7 6 30 30 H 1.09003 * 109.47617 * 60.00251 * 9 7 6 31 31 H 1.08998 * 109.47347 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.47683 * 300.00342 * 9 7 6 33 33 H 0.97001 * 120.00154 * 179.97438 * 13 12 10 34 34 H 0.96702 * 113.99656 * 270.30321 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3755 0.0005 5 6 1.9178 3.6069 0.0011 6 6 3.2979 3.6835 -0.0045 7 6 3.9772 5.0287 -0.0105 8 6 2.9217 6.1326 -0.0994 9 6 4.7849 5.1979 1.2778 10 6 4.9006 5.1197 -1.1980 11 1 4.9816 4.2896 -1.8840 12 6 5.6420 6.2630 -1.4086 13 7 5.5437 7.2738 -0.5729 14 14 6.7861 6.3762 -2.8809 15 1 6.0002 6.2228 -4.1315 16 1 7.4640 7.6975 -2.8806 17 1 7.8041 5.2981 -2.8007 18 6 4.0582 2.5233 0.0008 19 8 5.4157 2.5994 0.0005 20 6 3.4319 1.2848 0.0005 21 9 4.1697 0.1531 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2128 2.3189 0.0002 26 1 1.3280 4.5117 0.0019 27 1 2.2538 6.0667 0.7595 28 1 3.4129 7.1056 -0.1033 29 1 2.3462 6.0121 -1.0172 30 1 5.5370 4.4114 1.3412 31 1 5.2766 6.1706 1.2733 32 1 4.1171 5.1319 2.1368 33 1 6.0656 8.0779 -0.7209 34 1 5.8081 2.6220 -0.8830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260080898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:02 Heat of formation + Delta-G solvation = -118.399906 kcal Electronic energy + Delta-G solvation = -19464.649835 eV Core-core repulsion = 16277.170602 eV Total energy + Delta-G solvation = -3187.479233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.77145 -41.22672 -39.71759 -37.31006 -36.35092 -33.27696 -30.94940 -29.68998 -28.04320 -27.47350 -27.16630 -23.86580 -23.24728 -20.89370 -19.79491 -18.41238 -18.25130 -17.76872 -17.20854 -17.03333 -16.68929 -16.07302 -15.68303 -15.33916 -15.21298 -14.79225 -14.50945 -13.71480 -13.41441 -13.15899 -13.09301 -12.94920 -12.76723 -12.57190 -12.38689 -12.25801 -12.04258 -11.94020 -11.77253 -11.33665 -11.03627 -10.68316 -10.29681 -9.57153 -8.95443 -7.94316 -6.09404 0.12681 0.35967 1.47139 1.49274 1.53957 2.17838 2.47108 2.62330 3.22290 3.28218 3.59580 3.92550 3.95887 4.28705 4.45073 4.45527 4.56462 4.75781 4.88693 4.92897 4.97687 5.06429 5.15573 5.18449 5.33840 5.51144 5.54575 5.63873 5.76234 5.77479 6.20118 6.27833 6.36030 6.48084 6.85221 6.93327 7.56206 9.04232 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.007023 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.059144 B = 3986.045404 C = 4367.663721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.087 3.913 4 C -0.177 4.177 5 C -0.087 4.087 6 C -0.088 4.088 7 C 0.101 3.899 8 C -0.126 4.126 9 C -0.120 4.120 10 C -0.503 4.503 11 H 0.048 0.952 12 C 0.027 3.973 13 N -0.904 5.904 14 Si 0.942 3.058 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.275 1.275 18 C 0.107 3.893 19 O -0.485 6.485 20 C 0.007 3.993 21 F -0.145 7.145 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.121 0.879 25 H 0.173 0.827 26 H 0.152 0.848 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.014 0.986 33 H 0.258 0.742 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.533 -8.955 0.163 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.041 3.959 4 C -0.195 4.195 5 C -0.105 4.105 6 C -0.089 4.089 7 C 0.101 3.899 8 C -0.183 4.183 9 C -0.177 4.177 10 C -0.542 4.542 11 H 0.066 0.934 12 C -0.173 4.173 13 N -0.543 5.543 14 Si 0.769 3.231 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.200 1.200 18 C 0.061 3.939 19 O -0.297 6.297 20 C -0.013 4.013 21 F -0.124 7.124 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.140 0.860 25 H 0.191 0.809 26 H 0.170 0.830 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -10.404 -9.017 0.791 13.790 hybrid contribution 1.093 0.169 -1.228 1.653 sum -9.310 -8.848 -0.438 12.852 Atomic orbital electron populations 1.23449 0.75628 1.05869 1.02835 1.86069 1.24195 1.25480 1.89069 1.18759 0.89600 0.86576 1.00940 1.21394 1.01493 0.89940 1.06660 1.21261 0.93265 0.98534 0.97457 1.20797 0.94087 0.95848 0.98195 1.17063 0.92291 0.86573 0.94011 1.21785 0.97166 1.01625 0.97771 1.21704 0.98770 1.01902 0.95346 1.21076 1.23917 1.00272 1.08887 0.93368 1.25454 0.97939 0.95676 0.98186 1.69924 1.41741 1.05428 1.37234 0.85868 0.79537 0.76968 0.80708 1.20231 1.21612 1.19996 1.18135 0.84390 0.89601 1.01787 1.84741 1.15027 1.95639 1.34294 1.17648 0.87395 0.82028 1.14254 1.91386 1.77056 1.49155 1.94840 0.91118 0.91130 0.86043 0.80937 0.83049 0.94692 0.92163 0.94670 0.94936 0.91947 0.96724 0.93282 0.74508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -9.58 10.36 -92.95 -0.96 -10.54 16 3 C 0.09 2.85 6.69 22.52 0.15 3.00 16 4 C -0.18 -4.97 9.04 22.38 0.20 -4.76 16 5 C -0.09 -2.92 8.97 22.25 0.20 -2.72 16 6 C -0.09 -3.64 4.73 -19.76 -0.09 -3.73 16 7 C 0.10 4.68 0.48 -53.68 -0.03 4.65 16 8 C -0.13 -5.54 6.92 71.98 0.50 -5.04 16 9 C -0.12 -5.80 8.06 71.98 0.58 -5.22 16 10 C -0.50 -25.32 6.71 25.60 0.17 -25.15 16 11 H 0.05 2.38 6.70 -2.91 -0.02 2.36 16 12 C 0.03 1.37 5.15 84.66 0.44 1.80 16 13 N -0.90 -48.41 9.35 21.45 0.20 -48.21 16 14 Si 0.94 41.58 29.54 68.60 2.03 43.61 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 C 0.11 4.44 6.16 22.52 0.14 4.58 16 19 O -0.49 -20.70 10.38 -93.07 -0.97 -21.66 16 20 C 0.01 0.27 7.32 22.53 0.16 0.44 16 21 F -0.15 -5.84 16.95 44.97 0.76 -5.07 16 22 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 23 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 24 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.17 3.29 6.29 -2.91 -0.02 3.28 16 26 H 0.15 4.54 5.89 -2.91 -0.02 4.53 16 27 H 0.03 1.34 7.34 -2.39 -0.02 1.32 16 28 H 0.06 2.99 6.11 -2.39 -0.01 2.97 16 29 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 30 H 0.03 1.60 6.41 -2.39 -0.02 1.59 16 31 H 0.06 3.29 6.03 -2.39 -0.01 3.28 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 34 H 0.40 14.97 8.00 -74.06 -0.59 14.38 16 Total: -1.00 -60.85 278.30 5.14 -55.71 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.55 Total: 16.95 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.53 Total: -30.78 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.20 Total: -48.21 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.93 Total: -32.21 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.76 Total: -5.07 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -60.85 5.14 -55.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260080898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.691 kcal (2) G-P(sol) polarization free energy of solvation -60.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds