Wall clock time and date at job start Mon Mar 30 2020 06:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35954 * 116.99844 * 2 1 4 4 C 1.38605 * 120.03398 * 359.97438 * 3 2 1 5 5 C 1.38632 * 119.91759 * 179.72707 * 4 3 2 6 6 O 1.35937 * 120.00852 * 179.97438 * 5 4 3 7 7 C 1.42898 * 116.99927 * 0.02562 * 6 5 4 8 8 C 1.38736 * 119.98449 * 0.02562 * 5 4 3 9 9 C 1.50700 * 119.96945 * 180.02562 * 8 5 4 10 10 C 1.52998 * 109.46838 * 84.99378 * 9 8 5 11 11 C 1.50705 * 109.46865 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99920 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99753 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00283 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99850 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47158 * 59.99505 * 15 13 11 17 17 H 1.48492 * 109.47139 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46819 * 299.99801 * 15 13 11 19 19 C 1.38216 * 120.06671 * 359.97438 * 8 5 4 20 20 C 1.38325 * 120.08618 * 0.02562 * 19 8 5 21 21 F 1.35093 * 119.99462 * 179.97438 * 20 19 8 22 22 H 1.08998 * 109.47516 * 299.99930 * 1 2 3 23 23 H 1.08997 * 109.47186 * 60.00467 * 1 2 3 24 24 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.03823 * 359.75237 * 4 3 2 26 26 H 1.08995 * 109.47414 * 59.99892 * 7 6 5 27 27 H 1.09000 * 109.47408 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.47083 * 299.99805 * 7 6 5 29 29 H 1.08990 * 109.47422 * 205.00119 * 9 8 5 30 30 H 1.08999 * 109.46481 * 325.00033 * 9 8 5 31 31 H 1.08996 * 109.47740 * 300.00106 * 10 9 8 32 32 H 1.08999 * 109.47049 * 60.01004 * 10 9 8 33 33 H 0.97000 * 120.00183 * 179.97438 * 14 13 11 34 34 H 1.07998 * 119.95222 * 180.02562 * 19 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2919 2.3742 -0.0005 5 6 1.9237 3.6082 0.0052 6 8 1.1858 4.7499 0.0041 7 6 -0.2356 4.6035 -0.0024 8 6 3.3094 3.6776 0.0109 9 6 3.9958 5.0192 0.0177 10 6 4.1104 5.5261 1.4567 11 6 4.7963 6.8680 1.4635 12 1 5.1179 7.3147 0.5343 13 6 5.0132 7.5253 2.6560 14 7 4.6211 6.9816 3.7874 15 14 5.8628 9.1889 2.6643 16 1 5.0693 10.1541 1.8617 17 1 5.9741 9.6809 4.0609 18 1 7.2200 9.0545 2.0767 19 6 4.0608 2.5176 0.0114 20 6 3.4334 1.2849 0.0057 21 9 4.1697 0.1523 0.0057 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2133 2.3190 -0.0050 26 1 -0.5484 4.0535 0.8851 27 1 -0.7023 5.5886 -0.0021 28 1 -0.5405 4.0570 -0.8948 29 1 4.9921 4.9197 -0.4129 30 1 3.4142 5.7278 -0.5719 31 1 3.1140 5.6256 1.8874 32 1 4.6920 4.8175 2.0464 33 1 4.7740 7.4439 4.6263 34 1 5.1394 2.5739 0.0163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100618.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:13 Heat of formation + Delta-G solvation = -106.657418 kcal Electronic energy + Delta-G solvation = -18598.436819 eV Core-core repulsion = 15411.466778 eV Total energy + Delta-G solvation = -3186.970041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.43936 -40.36390 -38.73964 -36.65026 -33.74116 -31.83041 -29.80432 -28.93071 -27.95871 -26.54520 -24.70752 -22.20686 -22.02513 -20.24982 -18.65854 -17.25065 -16.87276 -16.35098 -16.11303 -15.74323 -15.40532 -14.86834 -14.69026 -14.42696 -14.33174 -13.86155 -13.15732 -12.76135 -12.45220 -12.13647 -12.09858 -11.84666 -11.58311 -11.44419 -11.29102 -10.86982 -10.85479 -10.53362 -10.24025 -9.76120 -9.48527 -9.05663 -8.51223 -8.29009 -7.48576 -5.94324 -3.96730 1.36003 1.51012 3.14301 3.36802 3.40947 3.43465 3.45265 3.77908 4.45925 4.50700 4.79019 4.91121 4.99272 5.00289 5.18979 5.24169 5.27094 5.29754 5.41295 5.53704 5.65402 5.91327 6.02702 6.18913 6.34401 6.68737 6.78312 6.84614 7.13704 7.21064 7.61050 7.74654 7.90561 8.06571 8.46897 9.09993 9.66546 11.16831 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.005274 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.275239 B = 5308.145407 C = 5911.005613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.113 3.887 4 C -0.272 4.272 5 C 0.158 3.842 6 O -0.293 6.293 7 C 0.026 3.974 8 C -0.093 4.093 9 C -0.068 4.068 10 C 0.031 3.969 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.081 4.081 20 C 0.032 3.968 21 F -0.139 7.139 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.139 0.861 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 -10.768 -8.486 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.067 3.933 4 C -0.291 4.291 5 C 0.112 3.888 6 O -0.205 6.205 7 C -0.069 4.069 8 C -0.094 4.094 9 C -0.105 4.105 10 C -0.006 4.006 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.100 4.100 20 C 0.012 3.988 21 F -0.118 7.118 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.156 0.844 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.268 -10.765 -8.289 17.030 hybrid contribution -0.021 0.632 0.214 0.667 sum -10.289 -10.134 -8.075 16.546 Atomic orbital electron populations 1.23048 0.78536 1.03831 1.01315 1.86112 1.21264 1.26039 1.89008 1.18559 0.90514 0.84689 0.99499 1.21043 1.00249 0.91252 1.16599 1.18613 0.90973 0.84438 0.94772 1.86267 1.18339 1.28087 1.87823 1.23055 0.79314 1.03907 1.00666 1.19553 0.89938 0.97401 1.02508 1.20667 0.98073 0.89669 1.02077 1.19056 0.97376 0.95444 0.88707 1.21213 1.38016 1.03794 0.92710 0.92658 1.25006 0.95883 0.97795 0.95676 1.69962 1.47231 1.38629 0.97668 0.86673 0.80140 0.84385 0.76876 1.20274 1.21364 1.20240 1.20785 1.01048 0.88839 0.99334 1.16788 0.85671 0.82908 1.13460 1.91446 1.76540 1.48986 1.94835 0.92614 0.92755 0.88215 0.84380 0.92874 0.88072 0.93164 0.92107 0.91517 0.96178 0.96630 0.93020 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.43 10.36 -19.60 -0.20 -4.63 16 3 C 0.11 1.79 6.69 -39.19 -0.26 1.53 16 4 C -0.27 -4.02 8.02 -39.30 -0.32 -4.33 16 5 C 0.16 2.75 6.66 -39.25 -0.26 2.48 16 6 O -0.29 -5.00 9.62 -19.54 -0.19 -5.19 16 7 C 0.03 0.30 9.81 101.05 0.99 1.29 16 8 C -0.09 -1.75 5.15 -104.45 -0.54 -2.29 16 9 C -0.07 -1.43 5.00 -27.88 -0.14 -1.57 16 10 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 11 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 C -0.08 -1.41 9.65 -39.56 -0.38 -1.79 16 20 C 0.03 0.54 7.31 -39.30 -0.29 0.25 16 21 F -0.14 -2.41 17.11 2.25 0.04 -2.37 16 22 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 23 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.14 1.59 4.53 -52.49 -0.24 1.35 16 26 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 30 H 0.07 1.41 7.68 -51.93 -0.40 1.01 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 296.44 15.07 4.47 4.47 Total: -1.00 -32.74 296.44 -5.22 -37.96 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.30 Total: -4.43 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.75 Total: -16.05 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.39 Total: -9.82 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.74 -5.22 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100618.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.698 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds