Wall clock time and date at job start Mon Mar 30 2020 06:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35954 * 116.99844 * 2 1 4 4 C 1.38605 * 120.03398 * 359.97438 * 3 2 1 5 5 C 1.38632 * 119.91759 * 179.72707 * 4 3 2 6 6 O 1.35937 * 120.00852 * 179.97438 * 5 4 3 7 7 C 1.42898 * 116.99927 * 0.02562 * 6 5 4 8 8 C 1.38736 * 119.98449 * 0.02562 * 5 4 3 9 9 C 1.50700 * 119.96945 * 180.02562 * 8 5 4 10 10 C 1.52998 * 109.46838 * 84.99378 * 9 8 5 11 11 C 1.50705 * 109.46865 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99920 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99753 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00283 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99850 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47158 * 59.99505 * 15 13 11 17 17 H 1.48492 * 109.47139 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46819 * 299.99801 * 15 13 11 19 19 C 1.38216 * 120.06671 * 359.97438 * 8 5 4 20 20 C 1.38325 * 120.08618 * 0.02562 * 19 8 5 21 21 F 1.35093 * 119.99462 * 179.97438 * 20 19 8 22 22 H 1.08998 * 109.47516 * 299.99930 * 1 2 3 23 23 H 1.08997 * 109.47186 * 60.00467 * 1 2 3 24 24 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.03823 * 359.75237 * 4 3 2 26 26 H 1.08995 * 109.47414 * 59.99892 * 7 6 5 27 27 H 1.09000 * 109.47408 * 179.97438 * 7 6 5 28 28 H 1.08999 * 109.47083 * 299.99805 * 7 6 5 29 29 H 1.08990 * 109.47422 * 205.00119 * 9 8 5 30 30 H 1.08999 * 109.46481 * 325.00033 * 9 8 5 31 31 H 1.08996 * 109.47740 * 300.00106 * 10 9 8 32 32 H 1.08999 * 109.47049 * 60.01004 * 10 9 8 33 33 H 0.97000 * 120.00183 * 179.97438 * 14 13 11 34 34 H 1.07998 * 119.95222 * 180.02562 * 19 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2919 2.3742 -0.0005 5 6 1.9237 3.6082 0.0052 6 8 1.1858 4.7499 0.0041 7 6 -0.2356 4.6035 -0.0024 8 6 3.3094 3.6776 0.0109 9 6 3.9958 5.0192 0.0177 10 6 4.1104 5.5261 1.4567 11 6 4.7963 6.8680 1.4635 12 1 5.1179 7.3147 0.5343 13 6 5.0132 7.5253 2.6560 14 7 4.6211 6.9816 3.7874 15 14 5.8628 9.1889 2.6643 16 1 5.0693 10.1541 1.8617 17 1 5.9741 9.6809 4.0609 18 1 7.2200 9.0545 2.0767 19 6 4.0608 2.5176 0.0114 20 6 3.4334 1.2849 0.0057 21 9 4.1697 0.1523 0.0057 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2133 2.3190 -0.0050 26 1 -0.5484 4.0535 0.8851 27 1 -0.7023 5.5886 -0.0021 28 1 -0.5405 4.0570 -0.8948 29 1 4.9921 4.9197 -0.4129 30 1 3.4142 5.7278 -0.5719 31 1 3.1140 5.6256 1.8874 32 1 4.6920 4.8175 2.0464 33 1 4.7740 7.4439 4.6263 34 1 5.1394 2.5739 0.0163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100618.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:13 Heat of formation + Delta-G solvation = -127.179626 kcal Electronic energy + Delta-G solvation = -18599.326729 eV Core-core repulsion = 15411.466778 eV Total energy + Delta-G solvation = -3187.859950 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.76072 -41.57604 -39.85879 -37.93294 -35.67187 -33.65298 -31.07069 -30.45283 -28.88226 -27.78097 -26.39041 -23.72441 -23.40670 -21.89497 -19.78879 -18.56882 -18.44892 -18.03953 -17.26134 -17.05094 -16.55237 -16.40595 -16.02609 -15.73837 -15.51168 -15.11697 -14.79388 -14.44574 -13.91789 -13.66283 -13.51944 -13.08738 -12.80801 -12.76123 -12.59367 -12.43763 -12.38233 -12.10399 -11.71544 -11.67401 -11.25048 -11.12154 -10.51100 -9.77341 -8.81938 -8.15316 -6.27060 0.09094 0.20249 1.42348 1.45879 1.53588 2.13240 2.33799 2.42648 2.50084 3.17319 3.23061 3.62682 3.81068 3.90681 4.26637 4.35658 4.36457 4.39651 4.43774 4.52796 4.62254 4.70206 4.71959 4.83733 4.92756 4.95576 5.22214 5.29329 5.51619 5.57947 5.81303 5.88995 6.12156 6.27289 6.44981 6.89435 7.41724 8.96039 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.005274 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.275239 B = 5308.145407 C = 5911.005613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.325 6.325 3 C 0.124 3.876 4 C -0.262 4.262 5 C 0.156 3.844 6 O -0.324 6.324 7 C 0.013 3.987 8 C -0.127 4.127 9 C -0.051 4.051 10 C 0.041 3.959 11 C -0.541 4.541 12 H 0.063 0.937 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.266 1.266 19 C -0.080 4.080 20 C 0.010 3.990 21 F -0.144 7.144 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.126 0.874 25 H 0.175 0.825 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.063 0.937 31 H -0.011 1.011 32 H -0.013 1.013 33 H 0.263 0.737 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 -10.840 -9.385 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.077 3.923 4 C -0.281 4.281 5 C 0.109 3.891 6 O -0.237 6.237 7 C -0.081 4.081 8 C -0.128 4.128 9 C -0.088 4.088 10 C 0.003 3.997 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.098 4.098 20 C -0.010 4.010 21 F -0.123 7.123 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.144 0.856 25 H 0.192 0.808 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.008 0.992 32 H 0.005 0.995 33 H 0.071 0.929 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.594 -10.850 -9.207 18.355 hybrid contribution 0.234 0.553 0.497 0.779 sum -11.360 -10.297 -8.710 17.634 Atomic orbital electron populations 1.23484 0.75666 1.06192 1.02688 1.86117 1.24215 1.25115 1.88436 1.18661 0.90213 0.85739 0.97645 1.21268 1.01913 0.89665 1.15221 1.18734 0.90647 0.85551 0.94156 1.86227 1.21165 1.28581 1.87709 1.23438 0.76485 1.05654 1.02530 1.19382 0.91123 0.96353 1.05975 1.20320 0.98880 0.91193 0.98406 1.18865 0.94748 0.94478 0.91559 1.21675 1.38202 1.04819 0.93237 0.91915 1.25976 0.96495 1.02103 0.95155 1.70109 1.48477 1.40534 0.98392 0.85503 0.79272 0.79135 0.77143 1.19103 1.20944 1.19075 1.20810 1.01416 0.88837 0.98767 1.16917 0.86602 0.82590 1.14891 1.91425 1.76799 1.49052 1.95012 0.91558 0.90917 0.85602 0.80759 0.91731 0.86674 0.90383 0.91394 0.91808 0.99218 0.99456 0.92869 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -8.49 10.36 -93.03 -0.96 -9.46 16 3 C 0.12 3.74 6.69 22.52 0.15 3.89 16 4 C -0.26 -7.19 8.02 22.45 0.18 -7.01 16 5 C 0.16 5.32 6.66 22.48 0.15 5.47 16 6 O -0.32 -10.88 9.62 -92.84 -0.89 -11.78 16 7 C 0.01 0.27 9.81 113.37 1.11 1.38 16 8 C -0.13 -4.88 5.15 -19.75 -0.10 -4.98 16 9 C -0.05 -2.21 5.00 29.85 0.15 -2.06 16 10 C 0.04 2.23 4.96 29.85 0.15 2.38 16 11 C -0.54 -31.48 9.11 25.60 0.23 -31.24 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 15 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.08 -2.81 9.65 22.29 0.21 -2.60 16 20 C 0.01 0.34 7.31 22.45 0.16 0.50 16 21 F -0.14 -4.97 17.11 44.97 0.77 -4.20 16 22 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 23 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 24 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.18 3.34 4.53 -2.91 -0.01 3.33 16 26 H 0.06 1.17 7.66 -2.39 -0.02 1.16 16 27 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.08 1.17 7.66 -2.39 -0.02 1.15 16 29 H 0.07 2.78 8.05 -2.39 -0.02 2.76 16 30 H 0.06 2.76 7.68 -2.39 -0.02 2.74 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.15 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -72.15 296.44 6.30 -65.85 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.10 Total: 3.13 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.98 Total: -32.50 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.86 Total: -21.23 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.77 Total: -4.20 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -72.15 6.30 -65.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100618.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.326 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds