Wall clock time and date at job start Mon Mar 30 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35984 * 116.99953 * 2 1 4 4 C 1.38565 * 120.06300 * 359.97438 * 3 2 1 5 5 C 1.38422 * 119.97778 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.95233 * 180.02562 * 5 4 3 7 7 C 1.38450 * 120.09860 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.94076 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46846 * 60.00334 * 8 7 5 10 10 C 1.53000 * 109.47066 * 179.97438 * 8 7 5 11 11 C 1.50690 * 109.47287 * 300.00151 * 8 7 5 12 12 H 1.07996 * 120.00383 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99955 * 179.97438 * 11 8 7 14 14 N 1.31516 * 120.00083 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 120.00053 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47090 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46964 * 120.00476 * 15 13 11 18 18 H 1.48496 * 109.46900 * 240.00368 * 15 13 11 19 19 C 1.38248 * 120.11497 * 0.02562 * 7 5 4 20 20 C 1.38540 * 120.02634 * 359.72296 * 19 7 5 21 21 O 1.36042 * 120.04798 * 180.29897 * 20 19 7 22 22 H 1.09002 * 109.47382 * 300.00174 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00281 * 1 2 3 25 25 H 1.07998 * 120.01160 * 359.97438 * 4 3 2 26 26 H 1.09006 * 109.47047 * 60.00009 * 9 8 7 27 27 H 1.09005 * 109.47109 * 179.97438 * 9 8 7 28 28 H 1.08993 * 109.47228 * 299.99775 * 9 8 7 29 29 H 1.09001 * 109.46735 * 60.00168 * 10 8 7 30 30 H 1.08993 * 109.47613 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.47262 * 300.00514 * 10 8 7 32 32 H 0.96992 * 120.00145 * 179.97438 * 14 13 11 33 33 H 1.08006 * 119.98624 * 179.97438 * 19 7 5 34 34 H 0.96703 * 113.99481 * 270.23205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2930 2.3746 -0.0005 5 6 1.9232 3.6070 -0.0011 6 9 1.1881 4.7405 -0.0011 7 6 3.3058 3.6798 -0.0005 8 6 3.9882 5.0234 -0.0017 9 6 3.5756 5.8060 1.2466 10 6 5.5053 4.8248 -0.0002 11 6 3.5829 5.7916 -1.2331 12 1 2.8991 5.3513 -1.9436 13 6 4.0842 7.0573 -1.4521 14 7 4.9165 7.5938 -0.5866 15 14 3.5823 8.0094 -2.9790 16 1 2.6439 7.1899 -3.7871 17 1 2.9148 9.2735 -2.5769 18 1 4.7888 8.3217 -3.7863 19 6 4.0614 2.5220 0.0000 20 6 3.4358 1.2859 0.0058 21 8 4.1788 0.1464 0.0125 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2144 2.3194 -0.0014 26 1 3.8689 5.2503 2.1373 27 1 4.0696 6.7777 1.2460 28 1 2.4949 5.9474 1.2460 29 1 5.7996 4.2671 -0.8892 30 1 5.9990 5.7966 -0.0006 31 1 5.7981 4.2693 0.8907 32 1 5.2694 8.4840 -0.7409 33 1 5.1398 2.5812 0.0000 34 1 4.3975 -0.1856 -0.8690 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260108255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:34 Heat of formation + Delta-G solvation = -101.612415 kcal Electronic energy + Delta-G solvation = -19391.387438 eV Core-core repulsion = 16204.636165 eV Total energy + Delta-G solvation = -3186.751273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.08370 -40.02480 -37.76864 -36.68610 -34.51023 -31.47591 -29.37838 -28.57598 -26.86090 -25.78720 -25.16419 -22.33237 -21.89597 -19.34952 -18.21646 -17.47447 -16.76545 -16.00716 -15.74663 -15.17640 -14.91755 -14.65089 -14.33121 -14.19688 -13.77671 -13.09427 -12.80401 -12.54777 -11.92046 -11.72101 -11.52405 -11.30173 -11.16769 -10.97949 -10.76399 -10.62578 -10.45197 -10.28646 -10.13133 -9.61353 -9.40772 -8.89500 -8.36611 -8.32839 -7.42647 -5.99290 -4.08718 1.53191 1.77473 3.28167 3.36509 3.38026 3.41055 3.95173 4.42649 4.52743 4.85453 5.08266 5.16864 5.17814 5.28018 5.44971 5.57461 5.69906 5.97566 6.21154 6.45526 6.60301 6.66974 6.72475 6.93445 6.95455 7.08781 7.21379 7.32895 7.44782 7.58303 7.73109 8.01302 8.03567 8.14173 8.39153 8.89365 9.55891 11.02065 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.006999 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.637779 B = 3999.563687 C = 4379.639421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.102 3.898 4 C -0.240 4.240 5 C 0.139 3.861 6 F -0.122 7.122 7 C -0.081 4.081 8 C 0.101 3.899 9 C -0.134 4.134 10 C -0.134 4.134 11 C -0.496 4.496 12 H 0.055 0.945 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.091 4.091 20 C 0.056 3.944 21 O -0.488 6.488 22 H 0.053 0.947 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.134 0.866 26 H 0.009 0.991 27 H 0.089 0.911 28 H 0.036 0.964 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.014 0.986 32 H 0.260 0.740 33 H 0.146 0.854 34 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 -11.028 0.565 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.056 3.944 4 C -0.259 4.259 5 C 0.119 3.881 6 F -0.101 7.101 7 C -0.082 4.082 8 C 0.101 3.899 9 C -0.192 4.192 10 C -0.191 4.191 11 C -0.534 4.534 12 H 0.073 0.927 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.720 3.280 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.110 4.110 20 C 0.010 3.990 21 O -0.296 6.296 22 H 0.072 0.928 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.152 0.848 26 H 0.028 0.972 27 H 0.108 0.892 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.164 0.836 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.022 -10.945 1.207 12.102 hybrid contribution -0.730 0.786 -1.389 1.755 sum -5.752 -10.159 -0.182 11.676 Atomic orbital electron populations 1.23025 0.79106 1.03441 1.01359 1.86110 1.20737 1.26273 1.89227 1.18934 0.91357 0.83959 1.00127 1.20962 1.00362 0.91148 1.13477 1.17254 0.89189 0.81196 1.00470 1.91497 1.76558 1.48829 1.93167 1.20644 0.91406 0.98387 0.97762 1.17197 0.91738 0.85508 0.95501 1.21883 1.00143 1.02650 0.94515 1.21905 0.98143 1.02509 0.96576 1.21001 1.27129 0.99908 1.05337 0.92676 1.24862 0.94878 0.97254 0.96459 1.69810 1.31590 1.15966 1.35135 0.86533 0.78348 0.79947 0.83195 1.19862 1.21003 1.21046 1.21260 1.01280 0.89386 0.99028 1.17733 0.85842 0.86534 1.08852 1.84890 1.71957 1.39834 1.32913 0.92796 0.88547 0.92798 0.84777 0.97221 0.89244 0.94538 0.95109 0.89269 0.96721 0.93018 0.83627 0.76658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.69 10.28 -34.23 -0.35 -5.04 16 3 C 0.10 1.74 6.70 -39.13 -0.26 1.48 16 4 C -0.24 -4.18 9.01 -39.39 -0.36 -4.54 16 5 C 0.14 2.86 6.69 -39.44 -0.26 2.60 16 6 F -0.12 -2.71 14.36 2.25 0.03 -2.67 16 7 C -0.08 -1.75 4.72 -104.54 -0.49 -2.24 16 8 C 0.10 2.43 0.49 -156.82 -0.08 2.35 16 9 C -0.13 -3.25 8.04 37.16 0.30 -2.95 16 10 C -0.13 -3.09 6.91 37.16 0.26 -2.83 16 11 C -0.50 -13.17 7.04 -34.44 -0.24 -13.41 16 12 H 0.05 1.50 7.60 -52.49 -0.40 1.11 16 13 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 14 N -0.89 -23.94 9.36 55.43 0.52 -23.42 16 15 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.09 -1.75 8.91 -39.47 -0.35 -2.10 16 20 C 0.06 0.98 6.72 -39.14 -0.26 0.72 16 21 O -0.49 -7.58 13.29 -34.42 -0.46 -8.04 16 22 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 23 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.13 1.97 6.30 -52.49 -0.33 1.64 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 28 H 0.04 0.87 6.29 -51.93 -0.33 0.55 16 29 H 0.03 0.67 7.51 -51.93 -0.39 0.28 16 30 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 31 H 0.01 0.29 7.51 -51.93 -0.39 -0.10 16 32 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.15 2.65 5.89 -52.48 -0.31 2.34 16 34 H 0.38 4.09 9.07 45.56 0.41 4.51 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -29.42 280.53 -5.04 -34.46 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.14 Total: 2.47 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.85 Total: -17.98 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.52 Total: -23.42 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.81 Total: -13.08 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.03 Total: -2.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.42 -5.04 -34.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260108255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.149 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds