Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35984 * 116.99953 * 2 1 4 4 C 1.38565 * 120.06300 * 359.97438 * 3 2 1 5 5 C 1.38422 * 119.97778 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.95233 * 180.02562 * 5 4 3 7 7 C 1.38450 * 120.09860 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.94076 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46846 * 60.00334 * 8 7 5 10 10 C 1.53000 * 109.47066 * 179.97438 * 8 7 5 11 11 C 1.50690 * 109.47287 * 300.00151 * 8 7 5 12 12 H 1.07996 * 120.00383 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99955 * 179.97438 * 11 8 7 14 14 N 1.31516 * 120.00083 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 120.00053 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47090 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46964 * 120.00476 * 15 13 11 18 18 H 1.48496 * 109.46900 * 240.00368 * 15 13 11 19 19 C 1.38248 * 120.11497 * 0.02562 * 7 5 4 20 20 C 1.38540 * 120.02634 * 359.72296 * 19 7 5 21 21 O 1.36042 * 120.04798 * 180.29897 * 20 19 7 22 22 H 1.09002 * 109.47382 * 300.00174 * 1 2 3 23 23 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46926 * 60.00281 * 1 2 3 25 25 H 1.07998 * 120.01160 * 359.97438 * 4 3 2 26 26 H 1.09006 * 109.47047 * 60.00009 * 9 8 7 27 27 H 1.09005 * 109.47109 * 179.97438 * 9 8 7 28 28 H 1.08993 * 109.47228 * 299.99775 * 9 8 7 29 29 H 1.09001 * 109.46735 * 60.00168 * 10 8 7 30 30 H 1.08993 * 109.47613 * 180.02562 * 10 8 7 31 31 H 1.08998 * 109.47262 * 300.00514 * 10 8 7 32 32 H 0.96992 * 120.00145 * 179.97438 * 14 13 11 33 33 H 1.08006 * 119.98624 * 179.97438 * 19 7 5 34 34 H 0.96703 * 113.99481 * 270.23205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2930 2.3746 -0.0005 5 6 1.9232 3.6070 -0.0011 6 9 1.1881 4.7405 -0.0011 7 6 3.3058 3.6798 -0.0005 8 6 3.9882 5.0234 -0.0017 9 6 3.5756 5.8060 1.2466 10 6 5.5053 4.8248 -0.0002 11 6 3.5829 5.7916 -1.2331 12 1 2.8991 5.3513 -1.9436 13 6 4.0842 7.0573 -1.4521 14 7 4.9165 7.5938 -0.5866 15 14 3.5823 8.0094 -2.9790 16 1 2.6439 7.1899 -3.7871 17 1 2.9148 9.2735 -2.5769 18 1 4.7888 8.3217 -3.7863 19 6 4.0614 2.5220 0.0000 20 6 3.4358 1.2859 0.0058 21 8 4.1788 0.1464 0.0125 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2144 2.3194 -0.0014 26 1 3.8689 5.2503 2.1373 27 1 4.0696 6.7777 1.2460 28 1 2.4949 5.9474 1.2460 29 1 5.7996 4.2671 -0.8892 30 1 5.9990 5.7966 -0.0006 31 1 5.7981 4.2693 0.8907 32 1 5.2694 8.4840 -0.7409 33 1 5.1398 2.5812 0.0000 34 1 4.3975 -0.1856 -0.8690 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260108255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = -119.992212 kcal Electronic energy + Delta-G solvation = -19392.184446 eV Core-core repulsion = 16204.636165 eV Total energy + Delta-G solvation = -3187.548281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.69061 -41.33844 -39.11016 -38.11842 -36.13679 -33.34623 -30.83464 -29.89149 -28.13462 -27.52910 -27.15670 -23.81539 -23.32377 -21.02856 -19.53947 -18.90073 -18.28679 -17.71556 -17.01196 -16.89838 -16.34432 -16.15028 -15.83613 -15.51074 -15.13523 -14.91857 -14.31703 -14.08750 -13.58115 -13.26638 -12.97871 -12.88332 -12.78940 -12.61904 -12.49003 -12.36852 -12.16064 -11.83596 -11.76442 -11.43119 -11.12228 -10.77801 -10.36941 -9.76067 -8.88183 -7.99927 -6.15140 0.10835 0.34335 1.39916 1.43573 1.52926 2.26678 2.42370 2.57275 3.21221 3.25980 3.44640 3.80502 4.06852 4.19796 4.39731 4.41623 4.59264 4.72843 4.76320 4.83546 4.90759 4.98509 5.07760 5.13976 5.28025 5.40691 5.43642 5.63899 5.68121 5.76946 6.10814 6.19783 6.27222 6.42829 6.86462 6.90336 7.50994 8.99074 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.028144 B = 0.006999 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.637779 B = 3999.563687 C = 4379.639421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.316 6.316 3 C 0.110 3.890 4 C -0.229 4.229 5 C 0.113 3.887 6 F -0.139 7.139 7 C -0.107 4.107 8 C 0.094 3.906 9 C -0.125 4.125 10 C -0.123 4.123 11 C -0.506 4.506 12 H 0.040 0.960 13 C 0.025 3.975 14 N -0.903 5.903 15 Si 0.943 3.057 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.279 1.279 19 C -0.094 4.094 20 C 0.063 3.937 21 O -0.491 6.491 22 H 0.061 0.939 23 H 0.127 0.873 24 H 0.063 0.937 25 H 0.162 0.838 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.151 0.849 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 -13.025 0.241 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.064 3.936 4 C -0.248 4.248 5 C 0.093 3.907 6 F -0.118 7.118 7 C -0.109 4.109 8 C 0.094 3.906 9 C -0.183 4.183 10 C -0.181 4.181 11 C -0.545 4.545 12 H 0.058 0.942 13 C -0.174 4.174 14 N -0.543 5.543 15 Si 0.770 3.230 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.204 1.204 19 C -0.113 4.113 20 C 0.018 3.982 21 O -0.302 6.302 22 H 0.080 0.920 23 H 0.145 0.855 24 H 0.082 0.918 25 H 0.179 0.821 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.840 -12.963 0.870 14.244 hybrid contribution -0.529 1.229 -1.274 1.848 sum -6.369 -11.734 -0.405 13.357 Atomic orbital electron populations 1.23415 0.76555 1.05877 1.02211 1.86120 1.23299 1.24914 1.88663 1.18979 0.91373 0.84627 0.98639 1.21128 1.01775 0.89892 1.12005 1.17507 0.89096 0.81804 1.02260 1.91444 1.76813 1.49939 1.93578 1.20448 0.92086 0.97783 1.00547 1.17140 0.92430 0.86905 0.94159 1.21749 0.99254 1.01730 0.95590 1.21749 0.97443 1.01297 0.97616 1.21177 1.26744 1.00440 1.06096 0.94172 1.25466 0.95120 0.98072 0.98705 1.69924 1.32118 1.16080 1.36132 0.85736 0.78046 0.78657 0.80582 1.20024 1.20911 1.20442 1.21256 1.01415 0.89401 0.99190 1.17696 0.86409 0.86559 1.07562 1.84826 1.71615 1.38779 1.34991 0.91988 0.85489 0.91839 0.82081 0.95909 0.91570 0.95342 0.94729 0.91828 0.94872 0.93063 0.83168 0.73941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -8.45 10.28 -79.47 -0.82 -9.27 16 3 C 0.11 3.47 6.70 22.56 0.15 3.62 16 4 C -0.23 -7.50 9.01 22.39 0.20 -7.30 16 5 C 0.11 4.61 6.69 22.36 0.15 4.76 16 6 F -0.14 -6.23 14.36 44.97 0.65 -5.59 16 7 C -0.11 -4.62 4.72 -19.81 -0.09 -4.71 16 8 C 0.09 4.58 0.49 -53.68 -0.03 4.55 16 9 C -0.13 -6.19 8.04 71.98 0.58 -5.61 16 10 C -0.12 -5.72 6.91 71.98 0.50 -5.22 16 11 C -0.51 -27.36 7.04 25.60 0.18 -27.18 16 12 H 0.04 2.23 7.60 -2.91 -0.02 2.21 16 13 C 0.03 1.37 5.15 84.66 0.44 1.80 16 14 N -0.90 -49.68 9.36 21.45 0.20 -49.48 16 15 Si 0.94 43.52 29.54 68.60 2.03 45.54 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 C -0.09 -3.49 8.91 22.34 0.20 -3.30 16 20 C 0.06 2.08 6.72 22.56 0.15 2.24 16 21 O -0.49 -13.79 13.29 -80.12 -1.06 -14.85 16 22 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 23 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.01 7.66 -2.38 -0.02 0.99 16 25 H 0.16 4.26 6.30 -2.91 -0.02 4.24 16 26 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.07 3.54 6.07 -2.38 -0.01 3.53 16 28 H 0.03 1.39 6.29 -2.39 -0.02 1.37 16 29 H 0.03 1.51 7.51 -2.39 -0.02 1.49 16 30 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 31 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 32 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 33 H 0.15 5.29 5.89 -2.91 -0.02 5.27 16 34 H 0.40 7.37 9.07 -74.06 -0.67 6.70 16 Total: -1.00 -62.91 280.53 4.99 -57.92 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.47 Total: 10.73 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 3.54 Total: -35.00 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.20 Total: -49.48 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.88 Total: -24.12 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.65 Total: -5.59 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.91 4.99 -57.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260108255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.077 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds