Wall clock time and date at job start Mon Mar 30 2020 06:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36042 * 117.00072 * 2 1 4 4 C 1.38629 * 120.00502 * 359.97438 * 3 2 1 5 5 C 1.38174 * 120.02074 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.97728 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47159 * 240.00021 * 6 5 4 8 8 C 1.52997 * 109.47503 * 359.97438 * 6 5 4 9 9 C 1.50699 * 109.47103 * 120.00291 * 6 5 4 10 10 H 1.08003 * 120.00370 * 356.47033 * 9 6 5 11 11 C 1.37875 * 120.00062 * 176.46884 * 9 6 5 12 12 N 1.31518 * 120.00171 * 6.85310 * 11 9 6 13 13 Si 1.86799 * 120.00025 * 186.85037 * 11 9 6 14 14 H 1.48496 * 109.47189 * 85.03598 * 13 11 9 15 15 H 1.48507 * 109.47415 * 205.03439 * 13 11 9 16 16 H 1.48502 * 109.47167 * 325.03356 * 13 11 9 17 17 C 1.38699 * 120.04013 * 359.97438 * 5 4 3 18 18 O 1.35981 * 119.99161 * 180.02562 * 17 5 4 19 19 C 1.38684 * 120.01583 * 0.03858 * 17 5 4 20 20 C 1.38312 * 119.97237 * 359.70922 * 19 17 5 21 21 F 1.35105 * 120.02041 * 180.29938 * 20 19 17 22 22 H 1.09004 * 109.47235 * 300.00553 * 1 2 3 23 23 H 1.08996 * 109.47175 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47231 * 59.99877 * 1 2 3 25 25 H 1.07995 * 119.99091 * 359.96017 * 4 3 2 26 26 H 1.08997 * 109.47184 * 53.40150 * 7 6 5 27 27 H 1.08998 * 109.47404 * 173.40372 * 7 6 5 28 28 H 1.09003 * 109.46859 * 293.40687 * 7 6 5 29 29 H 1.09004 * 109.46926 * 60.00299 * 8 6 5 30 30 H 1.09000 * 109.47289 * 180.02562 * 8 6 5 31 31 H 1.09002 * 109.47125 * 300.00675 * 8 6 5 32 32 H 0.96991 * 120.00057 * 180.02562 * 12 11 9 33 33 H 0.96702 * 114.00176 * 90.00086 * 18 17 5 34 34 H 1.07996 * 120.01486 * 179.97438 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2916 2.3749 -0.0005 5 6 1.9186 3.6062 0.0000 6 6 1.0970 4.8695 0.0000 7 6 1.4241 5.6905 -1.2489 8 6 -0.3903 4.5107 -0.0013 9 6 1.4183 5.6776 1.2307 10 1 2.1018 5.2870 1.9701 11 6 0.8397 6.9158 1.4129 12 7 -0.0926 7.3342 0.5850 13 14 1.3799 7.9990 2.8356 14 1 2.5802 8.7773 2.4373 15 1 0.2810 8.9320 3.1926 16 1 1.7079 7.1488 4.0083 17 6 3.3036 3.6801 0.0016 18 8 3.9196 4.8924 0.0027 19 6 4.0604 2.5179 0.0019 20 6 3.4334 1.2851 0.0066 21 9 4.1697 0.1523 0.0130 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 0.2132 2.3183 -0.0016 26 1 1.3035 5.0676 -2.1352 27 1 0.7486 6.5438 -1.3100 28 1 2.4532 6.0451 -1.1914 29 1 -0.6236 3.9256 0.8883 30 1 -0.9845 5.4245 -0.0018 31 1 -0.6223 3.9263 -0.8917 32 1 -0.4994 8.2053 0.7129 33 1 4.0968 5.2428 0.8864 34 1 5.1388 2.5755 0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:05 Heat of formation + Delta-G solvation = -119.369950 kcal Electronic energy + Delta-G solvation = -19487.423694 eV Core-core repulsion = 16299.902396 eV Total energy + Delta-G solvation = -3187.521297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.78400 -41.32963 -39.58359 -37.19263 -36.33441 -33.45821 -30.70022 -29.92401 -28.16631 -27.38215 -27.12251 -24.03476 -23.10069 -21.02315 -19.53346 -18.73258 -18.18529 -17.77055 -17.12834 -16.93677 -16.61051 -16.01186 -15.53700 -15.43158 -15.17279 -14.90583 -14.51513 -14.15923 -13.38664 -13.27149 -12.97484 -12.81591 -12.68211 -12.62365 -12.51884 -12.22019 -12.10271 -11.99627 -11.72844 -11.36385 -10.98706 -10.73734 -10.28924 -9.73489 -8.87451 -7.96710 -6.10452 0.19404 0.26329 1.47444 1.50893 1.56006 2.23279 2.45837 2.58350 3.14901 3.27745 3.60699 3.84710 4.04232 4.25888 4.38781 4.43201 4.54303 4.71388 4.86194 4.87744 4.89872 4.95357 5.10609 5.13040 5.32981 5.50520 5.52136 5.62076 5.73655 5.75718 6.16751 6.22623 6.31210 6.45031 6.90662 7.03148 7.55294 9.03188 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.007408 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.153596 B = 3778.549036 C = 4264.584015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.082 3.918 4 C -0.179 4.179 5 C -0.047 4.047 6 C 0.097 3.903 7 C -0.114 4.114 8 C -0.127 4.127 9 C -0.503 4.503 10 H 0.052 0.948 11 C 0.028 3.972 12 N -0.904 5.904 13 Si 0.944 3.056 14 H -0.276 1.276 15 H -0.293 1.293 16 H -0.272 1.272 17 C 0.098 3.902 18 O -0.487 6.487 19 C -0.142 4.142 20 C 0.045 3.955 21 F -0.141 7.141 22 H 0.060 0.940 23 H 0.129 0.871 24 H 0.062 0.938 25 H 0.152 0.848 26 H 0.011 0.989 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.258 0.742 33 H 0.397 0.603 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -9.544 -0.270 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.036 3.964 4 C -0.197 4.197 5 C -0.047 4.047 6 C 0.097 3.903 7 C -0.172 4.172 8 C -0.184 4.184 9 C -0.541 4.541 10 H 0.070 0.930 11 C -0.172 4.172 12 N -0.543 5.543 13 Si 0.771 3.229 14 H -0.202 1.202 15 H -0.219 1.219 16 H -0.197 1.197 17 C 0.053 3.947 18 O -0.299 6.299 19 C -0.161 4.161 20 C 0.026 3.974 21 F -0.120 7.120 22 H 0.079 0.921 23 H 0.147 0.853 24 H 0.081 0.919 25 H 0.170 0.830 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.255 0.745 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.275 -9.678 -0.900 9.982 hybrid contribution 0.024 0.855 1.190 1.465 sum 2.298 -8.823 0.290 9.122 Atomic orbital electron populations 1.23388 0.76198 1.05841 1.02243 1.86066 1.23659 1.25422 1.89032 1.19017 0.90743 0.85843 1.00780 1.21219 1.01254 0.90082 1.07165 1.20897 0.94143 0.96142 0.93564 1.17145 0.90752 0.87810 0.94630 1.21647 1.00901 0.99738 0.94926 1.21825 0.98934 1.00534 0.97153 1.21033 1.26492 1.01732 1.04870 0.93020 1.25469 0.94726 0.98839 0.98126 1.69958 1.25914 1.19839 1.38619 0.85792 0.77761 0.79017 0.80301 1.20214 1.21926 1.19735 1.17936 0.89489 0.85072 1.02252 1.84749 1.79114 1.31647 1.34346 1.21275 1.01922 0.89351 1.03534 1.16700 0.86016 0.82542 1.12188 1.91434 1.76686 1.49094 1.94796 0.92113 0.85287 0.91935 0.83026 0.96999 0.92508 0.93817 0.95054 0.91821 0.95384 0.93263 0.74519 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -10.14 10.36 -94.02 -0.97 -11.11 16 3 C 0.08 2.84 6.69 22.52 0.15 2.99 16 4 C -0.18 -6.46 7.96 22.35 0.18 -6.28 16 5 C -0.05 -1.89 4.72 -19.77 -0.09 -1.98 16 6 C 0.10 4.41 0.48 -53.68 -0.03 4.38 16 7 C -0.11 -5.38 7.80 71.98 0.56 -4.82 16 8 C -0.13 -5.61 6.94 71.98 0.50 -5.11 16 9 C -0.50 -24.57 6.70 25.60 0.17 -24.40 16 10 H 0.05 2.48 7.30 -2.91 -0.02 2.46 16 11 C 0.03 1.40 5.13 84.65 0.43 1.83 16 12 N -0.90 -47.61 9.48 21.45 0.20 -47.41 16 13 Si 0.94 40.50 29.54 68.60 2.03 42.53 16 14 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 17 C 0.10 3.68 6.23 22.49 0.14 3.82 16 18 O -0.49 -18.09 10.43 -93.33 -0.97 -19.06 16 19 C -0.14 -4.71 9.96 22.39 0.22 -4.48 16 20 C 0.05 1.57 7.31 22.44 0.16 1.73 16 21 F -0.14 -4.79 17.11 44.97 0.77 -4.02 16 22 H 0.06 1.30 7.66 -2.38 -0.02 1.28 16 23 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 25 H 0.15 5.05 4.12 -2.91 -0.01 5.04 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 2.90 6.28 -2.39 -0.01 2.88 16 28 H 0.04 2.06 6.33 -2.39 -0.02 2.05 16 29 H 0.03 1.31 7.51 -2.39 -0.02 1.29 16 30 H 0.06 3.15 6.10 -2.39 -0.01 3.14 16 31 H 0.03 1.09 7.51 -2.39 -0.02 1.07 16 32 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 33 H 0.40 12.64 8.40 -74.06 -0.62 12.02 16 34 H 0.16 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -56.93 279.50 5.08 -51.85 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.52 Total: 18.06 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.52 Total: -30.83 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.20 Total: -47.41 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.95 Total: -30.17 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.77 Total: -4.02 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -56.93 5.08 -51.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.524 kcal (2) G-P(sol) polarization free energy of solvation -56.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds