Wall clock time and date at job start Mon Mar 30 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99745 * 2 1 4 4 C 1.50705 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.38171 * 120.00278 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.08013 * 179.74195 * 5 4 3 7 7 C 1.50699 * 119.96108 * 180.25737 * 6 5 4 8 8 C 1.50697 * 109.47273 * 100.00032 * 7 6 5 9 9 H 1.08008 * 119.99875 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00152 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99725 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00035 * 0.02562 * 10 8 7 13 13 H 1.48510 * 109.46790 * 90.00002 * 12 10 8 14 14 H 1.48494 * 109.47288 * 209.99630 * 12 10 8 15 15 H 1.48496 * 109.47089 * 330.00062 * 12 10 8 16 16 C 1.38521 * 120.08183 * 0.28263 * 6 5 4 17 17 F 1.35109 * 119.99522 * 179.97438 * 16 6 5 18 18 C 1.38338 * 120.00896 * 359.97438 * 16 6 5 19 19 C 1.38709 * 119.91669 * 359.97438 * 18 16 6 20 20 O 1.35902 * 120.04032 * 180.02562 * 19 18 16 21 21 C 1.42900 * 117.00184 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.46957 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46947 * 299.99580 * 1 2 3 24 24 H 1.08996 * 109.47345 * 59.99509 * 1 2 3 25 25 H 1.08997 * 109.46979 * 60.00541 * 3 2 1 26 26 H 1.08996 * 109.47353 * 300.00055 * 3 2 1 27 27 H 1.08002 * 119.96378 * 0.02777 * 5 4 3 28 28 H 1.08996 * 109.47474 * 220.00329 * 7 6 5 29 29 H 1.09001 * 109.46612 * 340.00226 * 7 6 5 30 30 H 0.97001 * 119.99153 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.04529 * 179.97438 * 18 16 6 32 32 H 1.08996 * 109.46690 * 60.00192 * 21 20 19 33 33 H 1.09000 * 109.47185 * 179.97438 * 21 20 19 34 34 H 1.08996 * 109.47297 * 300.00315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1068 -0.0608 0.0016 6 6 5.4844 -0.1718 -0.0032 7 6 6.1297 -1.5337 -0.0079 8 6 6.5631 -1.8793 -1.4092 9 1 6.3891 -1.1823 -2.2157 10 6 7.1818 -3.0853 -1.6618 11 7 7.5605 -3.3866 -2.8847 12 14 7.4822 -4.2911 -0.2671 13 1 6.3147 -5.1999 -0.1385 14 1 8.7008 -5.0887 -0.5562 15 1 7.6695 -3.5432 1.0020 16 6 6.2727 0.9672 -0.0031 17 9 7.6193 0.8566 -0.0073 18 6 5.6815 2.2178 0.0013 19 6 4.2989 2.3294 0.0050 20 8 3.7154 3.5568 0.0088 21 6 4.5867 4.6894 0.0092 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.4941 -0.9503 0.0015 28 1 6.9988 -1.5262 0.6498 29 1 5.4137 -2.2761 0.3445 30 1 7.9954 -4.2353 -3.0624 31 1 6.2955 3.1063 0.0018 32 1 5.2135 4.6658 -0.8822 33 1 3.9938 5.6040 0.0119 34 1 5.2175 4.6622 0.8977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260206968.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:35 Heat of formation + Delta-G solvation = -107.818790 kcal Electronic energy + Delta-G solvation = -18642.537180 eV Core-core repulsion = 15455.516779 eV Total energy + Delta-G solvation = -3187.020401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.16073 -39.99282 -37.88996 -36.93904 -33.27268 -31.61128 -30.94532 -28.06757 -27.34965 -26.39582 -25.05570 -22.86059 -21.66475 -20.02235 -18.10021 -16.99345 -16.76508 -16.00076 -15.81932 -15.65702 -15.47813 -14.85981 -14.74692 -14.31797 -14.17681 -13.89225 -12.95253 -12.90689 -12.55488 -12.34351 -11.92361 -11.86865 -11.74550 -11.40982 -11.19445 -10.91035 -10.69276 -10.40634 -10.00684 -9.92744 -9.67863 -9.32725 -8.53286 -8.32837 -7.48590 -6.02660 -4.01361 1.58769 1.78539 3.32967 3.34284 3.40181 3.44001 3.79804 4.02956 4.46293 4.77932 5.03834 5.10061 5.13563 5.15557 5.29052 5.31609 5.36962 5.41290 5.45930 5.58164 5.62437 5.65948 5.71703 6.13016 6.34349 6.46032 6.72870 6.78775 6.99683 7.18048 7.26624 7.40004 7.56531 7.72741 8.52729 9.01264 9.57411 11.10481 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.006907 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.849293 B = 4052.961403 C = 5159.725505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.122 3.878 4 C -0.136 4.136 5 C -0.037 4.037 6 C -0.098 4.098 7 C 0.020 3.980 8 C -0.511 4.511 9 H 0.073 0.927 10 C 0.070 3.930 11 N -0.900 5.900 12 Si 0.877 3.123 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.264 1.264 16 C 0.139 3.861 17 F -0.130 7.130 18 C -0.245 4.245 19 C 0.133 3.867 20 O -0.318 6.318 21 C 0.028 3.972 22 H 0.086 0.914 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.146 0.854 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.134 0.866 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.686 13.010 7.718 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.046 3.954 4 C -0.137 4.137 5 C -0.055 4.055 6 C -0.099 4.099 7 C -0.017 4.017 8 C -0.548 4.548 9 H 0.091 0.909 10 C -0.131 4.131 11 N -0.539 5.539 12 Si 0.704 3.296 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.189 1.189 16 C 0.119 3.881 17 F -0.108 7.108 18 C -0.265 4.265 19 C 0.088 3.912 20 O -0.232 6.232 21 C -0.068 4.068 22 H 0.104 0.896 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.629 12.755 7.606 18.262 hybrid contribution 0.619 -0.285 0.474 0.830 sum -10.011 12.470 8.080 17.917 Atomic orbital electron populations 1.22712 0.81151 1.02749 0.99719 1.87898 1.19433 1.27626 1.95416 1.20909 0.89743 0.84371 1.00395 1.18900 0.93892 0.91182 1.09753 1.20650 0.93139 0.96614 0.95083 1.20344 0.93320 0.96496 0.99755 1.18697 0.95757 0.88265 0.98982 1.20895 1.38514 1.03476 0.91965 0.90922 1.24965 0.94897 0.97797 0.95466 1.69905 1.40909 1.23521 1.19528 0.86812 0.78032 0.81449 0.83307 1.20060 1.21232 1.18907 1.17269 0.77341 0.92997 1.00460 1.91493 1.29073 1.96886 1.93348 1.20918 0.93966 0.97484 1.14112 1.18139 0.90118 0.84114 0.98843 1.86010 1.35602 1.12280 1.89267 1.23013 0.95214 0.86982 1.01543 0.89571 0.94280 0.94152 0.92389 0.92255 0.83660 0.95112 0.95286 0.92642 0.84802 0.92606 0.88533 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.71 9.18 -35.23 -0.32 -6.03 16 3 C 0.12 1.74 5.80 36.01 0.21 1.95 16 4 C -0.14 -2.34 5.89 -104.46 -0.62 -2.96 16 5 C -0.04 -0.72 8.99 -39.62 -0.36 -1.08 16 6 C -0.10 -2.16 5.08 -104.53 -0.53 -2.69 16 7 C 0.02 0.50 3.89 -29.04 -0.11 0.39 16 8 C -0.51 -14.96 9.64 -34.44 -0.33 -15.29 16 9 H 0.07 2.33 7.98 -52.48 -0.42 1.91 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 12 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 16 C 0.14 2.88 7.23 -39.44 -0.29 2.60 16 17 F -0.13 -2.87 16.66 2.25 0.04 -2.83 16 18 C -0.25 -4.21 9.02 -39.37 -0.35 -4.56 16 19 C 0.13 2.17 6.66 -39.23 -0.26 1.91 16 20 O -0.32 -4.35 9.92 -19.43 -0.19 -4.55 16 21 C 0.03 0.27 9.81 101.05 0.99 1.26 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.15 2.81 6.98 -52.49 -0.37 2.44 16 28 H 0.03 0.78 7.00 -51.93 -0.36 0.41 16 29 H 0.03 0.69 7.43 -51.93 -0.39 0.31 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.13 1.91 6.30 -52.49 -0.33 1.58 16 32 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -32.77 294.61 -4.93 -37.71 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.36 Total: -3.57 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -0.63 Total: -15.04 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.37 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.52 Total: -10.58 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.77 -4.93 -37.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206968.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.112 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds