Wall clock time and date at job start Mon Mar 30 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99745 * 2 1 4 4 C 1.50705 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.38171 * 120.00278 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.08013 * 179.74195 * 5 4 3 7 7 C 1.50699 * 119.96108 * 180.25737 * 6 5 4 8 8 C 1.50697 * 109.47273 * 100.00032 * 7 6 5 9 9 H 1.08008 * 119.99875 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00152 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99725 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00035 * 0.02562 * 10 8 7 13 13 H 1.48510 * 109.46790 * 90.00002 * 12 10 8 14 14 H 1.48494 * 109.47288 * 209.99630 * 12 10 8 15 15 H 1.48496 * 109.47089 * 330.00062 * 12 10 8 16 16 C 1.38521 * 120.08183 * 0.28263 * 6 5 4 17 17 F 1.35109 * 119.99522 * 179.97438 * 16 6 5 18 18 C 1.38338 * 120.00896 * 359.97438 * 16 6 5 19 19 C 1.38709 * 119.91669 * 359.97438 * 18 16 6 20 20 O 1.35902 * 120.04032 * 180.02562 * 19 18 16 21 21 C 1.42900 * 117.00184 * 359.97438 * 20 19 18 22 22 H 1.08998 * 109.46957 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46947 * 299.99580 * 1 2 3 24 24 H 1.08996 * 109.47345 * 59.99509 * 1 2 3 25 25 H 1.08997 * 109.46979 * 60.00541 * 3 2 1 26 26 H 1.08996 * 109.47353 * 300.00055 * 3 2 1 27 27 H 1.08002 * 119.96378 * 0.02777 * 5 4 3 28 28 H 1.08996 * 109.47474 * 220.00329 * 7 6 5 29 29 H 1.09001 * 109.46612 * 340.00226 * 7 6 5 30 30 H 0.97001 * 119.99153 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.04529 * 179.97438 * 18 16 6 32 32 H 1.08996 * 109.46690 * 60.00192 * 21 20 19 33 33 H 1.09000 * 109.47185 * 179.97438 * 21 20 19 34 34 H 1.08996 * 109.47297 * 300.00315 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1068 -0.0608 0.0016 6 6 5.4844 -0.1718 -0.0032 7 6 6.1297 -1.5337 -0.0079 8 6 6.5631 -1.8793 -1.4092 9 1 6.3891 -1.1823 -2.2157 10 6 7.1818 -3.0853 -1.6618 11 7 7.5605 -3.3866 -2.8847 12 14 7.4822 -4.2911 -0.2671 13 1 6.3147 -5.1999 -0.1385 14 1 8.7008 -5.0887 -0.5562 15 1 7.6695 -3.5432 1.0020 16 6 6.2727 0.9672 -0.0031 17 9 7.6193 0.8566 -0.0073 18 6 5.6815 2.2178 0.0013 19 6 4.2989 2.3294 0.0050 20 8 3.7154 3.5568 0.0088 21 6 4.5867 4.6894 0.0092 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8464 -0.8899 27 1 3.4941 -0.9503 0.0015 28 1 6.9988 -1.5262 0.6498 29 1 5.4137 -2.2761 0.3445 30 1 7.9954 -4.2353 -3.0624 31 1 6.2955 3.1063 0.0018 32 1 5.2135 4.6658 -0.8822 33 1 3.9938 5.6040 0.0119 34 1 5.2175 4.6622 0.8977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206968.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:34 Heat of formation + Delta-G solvation = -129.506128 kcal Electronic energy + Delta-G solvation = -18643.477614 eV Core-core repulsion = 15455.516779 eV Total energy + Delta-G solvation = -3187.960835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.80669 -41.25764 -38.97655 -38.22592 -35.29054 -33.27805 -32.46868 -29.55756 -28.44967 -27.52024 -26.22190 -24.73362 -23.04141 -21.60950 -19.39907 -19.02426 -18.27132 -17.09727 -16.99946 -16.94236 -16.55138 -16.50324 -16.24519 -15.84430 -15.50996 -15.36393 -14.75882 -14.11788 -13.97373 -13.89401 -13.60634 -13.30798 -12.87332 -12.76042 -12.44022 -12.34883 -12.15858 -12.03899 -11.77533 -11.64993 -11.43600 -10.79457 -10.70882 -9.75433 -8.95039 -8.30937 -6.35984 0.12886 0.33658 1.34913 1.37414 1.49400 2.26116 2.34808 2.55963 2.79666 3.02985 3.35285 3.77459 3.89029 4.05407 4.17161 4.31800 4.42267 4.44222 4.49888 4.59888 4.66934 4.72176 4.77461 4.83983 4.91514 4.96170 5.01726 5.20776 5.26321 5.50868 5.63327 5.73755 6.21758 6.30234 6.32423 6.67748 7.26842 8.85890 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.006907 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.849293 B = 4052.961403 C = 5159.725505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.125 3.875 4 C -0.137 4.137 5 C -0.043 4.043 6 C -0.134 4.134 7 C 0.028 3.972 8 C -0.519 4.519 9 H 0.025 0.975 10 C 0.009 3.991 11 N -0.948 5.948 12 Si 0.950 3.050 13 H -0.259 1.259 14 H -0.280 1.280 15 H -0.250 1.250 16 C 0.112 3.888 17 F -0.146 7.146 18 C -0.236 4.236 19 C 0.149 3.851 20 O -0.315 6.315 21 C 0.014 3.986 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.268 0.732 31 H 0.164 0.836 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 14.465 9.433 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.335 6.335 3 C 0.049 3.951 4 C -0.138 4.138 5 C -0.061 4.061 6 C -0.135 4.135 7 C -0.010 4.010 8 C -0.557 4.557 9 H 0.043 0.957 10 C -0.188 4.188 11 N -0.588 5.588 12 Si 0.772 3.228 13 H -0.184 1.184 14 H -0.206 1.206 15 H -0.174 1.174 16 C 0.093 3.907 17 F -0.125 7.125 18 C -0.255 4.255 19 C 0.103 3.897 20 O -0.229 6.229 21 C -0.080 4.080 22 H 0.112 0.888 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.159 0.841 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.181 0.819 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.182 14.239 9.327 20.932 hybrid contribution 0.982 -0.526 -0.134 1.123 sum -11.200 13.713 9.193 19.950 Atomic orbital electron populations 1.22941 0.78952 1.03872 1.01180 1.87859 1.21892 1.28030 1.95683 1.20965 0.87571 0.84661 1.01891 1.19244 0.95961 0.90533 1.08097 1.20602 0.92055 0.97861 0.95572 1.20208 0.94573 0.95494 1.03255 1.18496 0.95866 0.90684 0.95918 1.21104 1.38662 1.02798 0.93149 0.95665 1.25969 0.94435 0.99983 0.98452 1.70060 1.42156 1.24512 1.22102 0.85662 0.78528 0.78728 0.79843 1.18362 1.20554 1.17368 1.17557 0.76723 0.94217 1.02218 1.91439 1.30235 1.97063 1.93755 1.21148 0.94783 0.96976 1.12641 1.18165 0.89576 0.85337 0.96637 1.86039 1.36418 1.11939 1.88456 1.23428 0.95892 0.86402 1.02276 0.88770 0.92419 0.93007 0.90202 0.91052 0.84097 0.95645 0.94343 0.92292 0.81854 0.92237 0.85163 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.64 9.18 -148.98 -1.37 -13.01 16 3 C 0.13 3.27 5.80 71.24 0.41 3.68 16 4 C -0.14 -4.53 5.89 -19.76 -0.12 -4.65 16 5 C -0.04 -1.69 8.99 22.25 0.20 -1.49 16 6 C -0.13 -6.06 5.08 -19.80 -0.10 -6.16 16 7 C 0.03 1.41 3.89 29.10 0.11 1.52 16 8 C -0.52 -31.78 9.64 25.60 0.25 -31.53 16 9 H 0.02 1.72 7.98 -2.91 -0.02 1.70 16 10 C 0.01 0.52 5.47 84.65 0.46 0.99 16 11 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 12 Si 0.95 45.67 27.47 68.60 1.88 47.55 16 13 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 16 C 0.11 4.73 7.23 22.36 0.16 4.89 16 17 F -0.15 -6.67 16.66 44.97 0.75 -5.92 16 18 C -0.24 -7.78 9.02 22.41 0.20 -7.57 16 19 C 0.15 4.53 6.66 22.50 0.15 4.68 16 20 O -0.32 -7.49 9.92 -92.44 -0.92 -8.41 16 21 C 0.01 0.22 9.81 113.37 1.11 1.33 16 22 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.14 5.55 6.98 -2.91 -0.02 5.53 16 28 H 0.03 1.30 7.00 -2.39 -0.02 1.29 16 29 H 0.04 1.85 7.43 -2.39 -0.02 1.83 16 30 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 31 H 0.16 4.26 6.30 -2.91 -0.02 4.24 16 32 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 33 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 Total: -1.00 -73.88 294.61 5.79 -68.09 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.04 Total: 5.29 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 4.09 Total: -32.58 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.30 Total: -61.01 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -2.28 Total: -21.42 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.75 Total: -5.92 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Total: -73.88 5.79 -68.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206968.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.411 kcal (2) G-P(sol) polarization free energy of solvation -73.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds