Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35996 * 117.00094 * 2 1 4 4 C 1.38628 * 120.06399 * 270.23457 * 3 2 1 5 5 C 1.50700 * 119.97816 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.04025 * 180.27734 * 4 3 2 7 7 C 1.38266 * 120.15928 * 359.73998 * 6 4 3 8 8 C 1.50703 * 119.93845 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46956 * 99.98139 * 8 7 6 10 10 C 1.50696 * 109.47214 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00181 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99995 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99821 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47253 * 60.00461 * 14 12 10 16 16 H 1.48504 * 109.46776 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46994 * 299.99905 * 14 12 10 18 18 C 1.38413 * 120.12032 * 0.02562 * 7 6 4 19 19 F 1.35099 * 120.01787 * 180.02562 * 18 7 6 20 20 C 1.38755 * 119.95850 * 359.97438 * 18 7 6 21 21 O 1.36053 * 120.07639 * 179.97438 * 20 18 7 22 22 H 1.09000 * 109.47231 * 59.99949 * 1 2 3 23 23 H 1.09006 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47247 * 299.99982 * 1 2 3 25 25 H 1.09000 * 109.47567 * 270.28352 * 5 4 3 26 26 H 1.09000 * 109.47361 * 30.27782 * 5 4 3 27 27 H 1.09004 * 109.47454 * 150.27818 * 5 4 3 28 28 H 1.07997 * 119.92317 * 179.72267 * 6 4 3 29 29 H 1.09006 * 109.47031 * 219.97776 * 8 7 6 30 30 H 1.08997 * 109.47419 * 339.98406 * 8 7 6 31 31 H 1.09003 * 109.47248 * 300.00387 * 9 8 7 32 32 H 1.09004 * 109.47175 * 59.99715 * 9 8 7 33 33 H 0.97008 * 119.99631 * 179.97438 * 13 12 10 34 34 H 0.96700 * 114.00376 * 89.99944 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3573 1.8327 -1.1998 5 6 2.0114 1.1644 -2.5054 6 6 2.9899 3.0615 -1.1992 7 6 3.3098 3.6776 -0.0035 8 6 3.9991 5.0178 -0.0087 9 6 2.9698 6.1216 0.2427 10 6 3.6591 7.4617 0.2381 11 1 4.7247 7.5203 0.0721 12 6 2.9293 8.6130 0.4449 13 7 1.6317 8.5417 0.6466 14 14 3.7837 10.2742 0.4385 15 1 4.4320 10.4924 -0.8795 16 1 2.7844 11.3456 0.6814 17 1 4.8134 10.3053 1.5079 18 6 2.9981 3.0658 1.1983 19 9 3.3111 3.6699 2.3655 20 6 2.3629 1.8321 1.2035 21 8 2.0559 1.2283 2.3834 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 2.8418 0.5331 -2.8217 26 1 1.1190 0.5523 -2.3751 27 1 1.8232 1.9242 -3.2640 28 1 3.2353 3.5416 -2.1350 29 1 4.7552 5.0405 0.7761 30 1 4.4746 5.1781 -0.9763 31 1 2.2136 6.0989 -0.5420 32 1 2.4942 5.9614 1.2103 33 1 1.1183 9.3517 0.7924 34 1 1.1817 1.4581 2.7271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260275024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = -119.422420 kcal Electronic energy + Delta-G solvation = -18698.862128 eV Core-core repulsion = 15511.338555 eV Total energy + Delta-G solvation = -3187.523573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.45229 -40.26010 -37.43826 -37.06879 -34.01444 -32.33345 -30.88612 -28.89057 -27.34167 -26.22854 -24.77315 -22.43043 -21.74401 -20.02357 -18.21720 -17.78568 -17.31330 -16.45230 -15.89151 -15.45730 -15.05422 -14.59333 -14.54310 -14.36555 -13.68084 -13.42342 -13.19419 -12.90711 -12.64254 -12.38486 -12.18248 -11.72787 -11.68064 -11.47833 -11.13194 -10.90881 -10.61448 -10.56047 -9.94807 -9.86837 -9.64229 -9.16479 -8.41074 -8.37144 -8.09074 -6.02489 -4.05597 1.14526 1.20659 3.32591 3.33166 3.36842 3.39793 3.73777 4.03167 4.44028 4.67806 4.88416 5.00422 5.11601 5.14867 5.27411 5.33496 5.39204 5.52416 5.55804 5.63454 5.80940 6.00799 6.14427 6.28734 6.42149 6.52560 6.68515 6.72934 6.99490 7.23106 7.61777 7.72919 7.74454 7.95762 8.36096 9.00340 9.58486 11.08736 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.005117 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.541879 B = 5470.743366 C = 5805.157961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.323 6.323 3 C 0.074 3.926 4 C -0.099 4.099 5 C -0.106 4.106 6 C -0.090 4.090 7 C -0.076 4.076 8 C -0.080 4.080 9 C 0.030 3.970 10 C -0.522 4.522 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.084 3.916 19 F -0.123 7.123 20 C 0.056 3.944 21 O -0.479 6.479 22 H 0.048 0.952 23 H 0.093 0.907 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -15.526 -3.537 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.239 6.239 3 C 0.030 3.970 4 C -0.100 4.100 5 C -0.162 4.162 6 C -0.109 4.109 7 C -0.077 4.077 8 C -0.117 4.117 9 C -0.007 4.007 10 C -0.561 4.561 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.064 3.936 19 F -0.102 7.102 20 C 0.009 3.991 21 O -0.288 6.288 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.139 -15.825 -3.508 16.349 hybrid contribution -0.287 1.447 0.470 1.549 sum -2.427 -14.377 -3.037 14.894 Atomic orbital electron populations 1.22984 0.79538 1.03045 1.00670 1.86104 1.19454 1.24127 1.94240 1.18371 1.00251 0.87716 0.90676 1.20086 1.00355 0.94830 0.94747 1.20665 1.01988 1.00321 0.93243 1.20806 0.98402 0.93731 0.97911 1.20476 0.98354 0.98052 0.90802 1.20853 0.99209 0.89458 1.02201 1.19074 0.93239 0.91014 0.97349 1.21170 0.94471 0.91164 1.49261 0.92525 1.25012 0.94831 0.99284 0.95187 1.69960 1.05919 1.28608 1.48915 0.86629 0.79241 0.83366 0.78613 1.20187 1.21270 1.20168 1.17762 1.02564 0.90939 0.82338 1.91514 1.90529 1.82639 1.45476 1.18632 1.03186 0.91182 0.86061 1.84914 1.39475 1.69505 1.34919 0.93358 0.88833 0.93823 0.90851 0.91589 0.91158 0.84267 0.91475 0.91308 0.96349 0.96303 0.92898 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.76 101.05 1.09 1.40 16 2 O -0.32 -4.40 9.42 -34.27 -0.32 -4.72 16 3 C 0.07 1.12 5.71 -39.13 -0.22 0.90 16 4 C -0.10 -1.41 5.89 -104.49 -0.62 -2.02 16 5 C -0.11 -1.13 9.78 36.01 0.35 -0.78 16 6 C -0.09 -1.41 9.31 -39.58 -0.37 -1.77 16 7 C -0.08 -1.40 5.14 -104.55 -0.54 -1.94 16 8 C -0.08 -1.67 5.00 -27.88 -0.14 -1.80 16 9 C 0.03 0.78 4.95 -27.88 -0.14 0.65 16 10 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.08 1.58 7.24 -39.33 -0.28 1.29 16 19 F -0.12 -2.53 16.50 2.25 0.04 -2.49 16 20 C 0.06 0.93 6.72 -39.09 -0.26 0.67 16 21 O -0.48 -7.26 13.15 -34.46 -0.45 -7.72 16 22 H 0.05 0.43 7.23 -51.93 -0.38 0.05 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.65 6.30 -51.93 -0.33 0.32 16 27 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.14 1.89 8.03 -52.49 -0.42 1.47 16 29 H 0.07 1.42 7.94 -51.93 -0.41 1.00 16 30 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.38 4.05 9.07 45.56 0.41 4.46 16 LS Contribution 299.71 15.07 4.52 4.52 Total: -1.00 -32.61 299.71 -5.66 -38.27 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -3.61 Total: -1.38 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.54 Total: -16.90 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.78 Total: -12.44 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.61 -5.66 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.149 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds