Wall clock time and date at job start Mon Mar 30 2020 06:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35996 * 117.00094 * 2 1 4 4 C 1.38628 * 120.06399 * 270.23457 * 3 2 1 5 5 C 1.50700 * 119.97816 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.04025 * 180.27734 * 4 3 2 7 7 C 1.38266 * 120.15928 * 359.73998 * 6 4 3 8 8 C 1.50703 * 119.93845 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46956 * 99.98139 * 8 7 6 10 10 C 1.50696 * 109.47214 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00181 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99995 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99821 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99922 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47253 * 60.00461 * 14 12 10 16 16 H 1.48504 * 109.46776 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46994 * 299.99905 * 14 12 10 18 18 C 1.38413 * 120.12032 * 0.02562 * 7 6 4 19 19 F 1.35099 * 120.01787 * 180.02562 * 18 7 6 20 20 C 1.38755 * 119.95850 * 359.97438 * 18 7 6 21 21 O 1.36053 * 120.07639 * 179.97438 * 20 18 7 22 22 H 1.09000 * 109.47231 * 59.99949 * 1 2 3 23 23 H 1.09006 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47247 * 299.99982 * 1 2 3 25 25 H 1.09000 * 109.47567 * 270.28352 * 5 4 3 26 26 H 1.09000 * 109.47361 * 30.27782 * 5 4 3 27 27 H 1.09004 * 109.47454 * 150.27818 * 5 4 3 28 28 H 1.07997 * 119.92317 * 179.72267 * 6 4 3 29 29 H 1.09006 * 109.47031 * 219.97776 * 8 7 6 30 30 H 1.08997 * 109.47419 * 339.98406 * 8 7 6 31 31 H 1.09003 * 109.47248 * 300.00387 * 9 8 7 32 32 H 1.09004 * 109.47175 * 59.99715 * 9 8 7 33 33 H 0.97008 * 119.99631 * 179.97438 * 13 12 10 34 34 H 0.96700 * 114.00376 * 89.99944 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3573 1.8327 -1.1998 5 6 2.0114 1.1644 -2.5054 6 6 2.9899 3.0615 -1.1992 7 6 3.3098 3.6776 -0.0035 8 6 3.9991 5.0178 -0.0087 9 6 2.9698 6.1216 0.2427 10 6 3.6591 7.4617 0.2381 11 1 4.7247 7.5203 0.0721 12 6 2.9293 8.6130 0.4449 13 7 1.6317 8.5417 0.6466 14 14 3.7837 10.2742 0.4385 15 1 4.4320 10.4924 -0.8795 16 1 2.7844 11.3456 0.6814 17 1 4.8134 10.3053 1.5079 18 6 2.9981 3.0658 1.1983 19 9 3.3111 3.6699 2.3655 20 6 2.3629 1.8321 1.2035 21 8 2.0559 1.2283 2.3834 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 2.8418 0.5331 -2.8217 26 1 1.1190 0.5523 -2.3751 27 1 1.8232 1.9242 -3.2640 28 1 3.2353 3.5416 -2.1350 29 1 4.7552 5.0405 0.7761 30 1 4.4746 5.1781 -0.9763 31 1 2.2136 6.0989 -0.5420 32 1 2.4942 5.9614 1.2103 33 1 1.1183 9.3517 0.7924 34 1 1.1817 1.4581 2.7271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260275024.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:37 Heat of formation + Delta-G solvation = -140.604361 kcal Electronic energy + Delta-G solvation = -18699.780646 eV Core-core repulsion = 15511.338555 eV Total energy + Delta-G solvation = -3188.442090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94207 -41.42792 -38.59583 -38.29526 -35.82392 -34.02117 -32.27319 -30.37270 -28.35849 -27.51487 -26.36546 -23.85323 -23.31849 -21.51090 -19.42954 -19.01508 -18.57352 -18.53385 -17.15281 -16.77290 -16.51275 -16.24389 -15.73260 -15.62687 -14.99594 -14.77027 -14.58259 -14.36392 -14.16189 -13.75557 -13.34392 -13.05686 -12.97852 -12.80486 -12.69844 -12.58526 -12.29239 -11.85458 -11.79838 -11.53598 -11.23584 -10.92535 -10.56593 -9.66316 -9.41940 -8.20969 -6.32945 -0.09071 -0.05382 1.40492 1.43872 1.51608 2.15118 2.41200 2.60366 2.86632 3.12346 3.40484 3.71358 3.78252 4.05442 4.31482 4.38197 4.42120 4.44545 4.59222 4.74124 4.76042 4.83250 4.84795 4.91989 5.03820 5.18024 5.25717 5.34459 5.45529 5.58693 5.68122 5.80232 6.19704 6.22119 6.64866 6.82622 7.36434 8.90710 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.005117 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.541879 B = 5470.743366 C = 5805.157961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.332 6.332 3 C 0.080 3.920 4 C -0.091 4.091 5 C -0.105 4.105 6 C -0.087 4.087 7 C -0.098 4.098 8 C -0.066 4.066 9 C 0.039 3.961 10 C -0.545 4.545 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.967 3.033 15 H -0.262 1.262 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.052 3.948 19 F -0.145 7.145 20 C 0.052 3.948 21 O -0.488 6.488 22 H 0.058 0.942 23 H 0.121 0.879 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.161 0.839 29 H 0.056 0.944 30 H 0.086 0.914 31 H -0.001 1.001 32 H -0.017 1.017 33 H 0.264 0.736 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 -16.428 -5.132 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C 0.036 3.964 4 C -0.091 4.091 5 C -0.161 4.161 6 C -0.105 4.105 7 C -0.099 4.099 8 C -0.103 4.103 9 C 0.002 3.998 10 C -0.583 4.583 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.208 1.208 17 H -0.195 1.195 18 C 0.032 3.968 19 F -0.123 7.123 20 C 0.006 3.994 21 O -0.299 6.299 22 H 0.077 0.923 23 H 0.139 0.861 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.179 0.821 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.017 0.983 32 H 0.001 0.999 33 H 0.073 0.927 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -2.123 -16.744 -5.103 17.632 hybrid contribution -0.402 1.578 0.972 1.896 sum -2.525 -15.166 -4.131 15.920 Atomic orbital electron populations 1.23291 0.77167 1.05155 1.01411 1.86076 1.21608 1.23004 1.94238 1.18496 0.99704 0.87877 0.90358 1.20461 0.98516 0.94055 0.96105 1.20782 1.02986 1.00894 0.91423 1.21045 0.97752 0.94226 0.97500 1.20337 1.00112 0.97443 0.92039 1.20551 0.97720 0.89458 1.02605 1.18882 0.93818 0.92520 0.94621 1.21642 0.95060 0.92430 1.49183 0.91795 1.25982 0.95496 1.03639 0.94540 1.70100 1.07601 1.29831 1.49808 0.85480 0.78142 0.78043 0.79273 1.18689 1.20823 1.19457 1.18116 1.04527 0.92302 0.81855 1.91444 1.91035 1.83237 1.46623 1.18720 1.02986 0.90591 0.87137 1.84850 1.41112 1.69249 1.34737 0.92306 0.86103 0.93468 0.89391 0.90424 0.89526 0.82142 0.92529 0.89565 0.98287 0.99885 0.92728 0.73875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.76 113.37 1.22 1.60 16 2 O -0.33 -8.23 9.42 -79.59 -0.75 -8.98 16 3 C 0.08 2.31 5.71 22.56 0.13 2.43 16 4 C -0.09 -2.37 5.89 -19.78 -0.12 -2.48 16 5 C -0.10 -1.86 9.78 71.24 0.70 -1.16 16 6 C -0.09 -2.60 9.31 22.27 0.21 -2.40 16 7 C -0.10 -3.69 5.14 -19.82 -0.10 -3.79 16 8 C -0.07 -2.82 5.00 29.85 0.15 -2.67 16 9 C 0.04 2.08 4.95 29.85 0.15 2.23 16 10 C -0.55 -31.33 9.11 25.60 0.23 -31.09 16 11 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 12 C 0.00 0.08 5.46 84.65 0.46 0.54 16 13 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 14 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 C 0.05 2.01 7.24 22.44 0.16 2.17 16 19 F -0.14 -6.30 16.50 44.97 0.74 -5.56 16 20 C 0.05 1.73 6.72 22.59 0.15 1.88 16 21 O -0.49 -14.68 13.15 -80.24 -1.06 -15.74 16 22 H 0.06 0.86 7.23 -2.39 -0.02 0.84 16 23 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.22 6.30 -2.39 -0.02 1.21 16 27 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 28 H 0.16 4.00 8.03 -2.91 -0.02 3.97 16 29 H 0.06 2.48 7.94 -2.38 -0.02 2.46 16 30 H 0.09 3.30 8.00 -2.39 -0.02 3.28 16 31 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 33 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 34 H 0.40 8.37 9.07 -74.06 -0.67 7.70 16 Total: -1.00 -71.74 299.71 5.04 -66.71 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.45 Total: 6.93 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.34 Total: -32.74 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.28 Total: -57.00 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.81 Total: -24.72 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.74 Total: -5.56 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.74 5.04 -66.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275024.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.898 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds