Wall clock time and date at job start Mon Mar 30 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36036 * 117.00060 * 2 1 4 4 C 1.38533 * 120.05016 * 0.02562 * 3 2 1 5 5 C 1.38250 * 120.02613 * 180.02562 * 4 3 2 6 6 C 1.38458 * 120.11839 * 359.97438 * 5 4 3 7 7 F 1.35094 * 119.95095 * 180.02562 * 6 5 4 8 8 C 1.38423 * 120.09386 * 0.02562 * 6 5 4 9 9 C 1.50701 * 120.01070 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46842 * 358.21651 * 9 8 6 11 11 C 1.53008 * 109.46915 * 118.21215 * 9 8 6 12 12 C 1.50692 * 109.47006 * 238.21101 * 9 8 6 13 13 H 1.07998 * 120.00573 * 0.34557 * 12 9 8 14 14 C 1.37881 * 119.99778 * 180.34229 * 12 9 8 15 15 N 1.31513 * 120.00309 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 120.00000 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47314 * 60.00034 * 16 14 12 18 18 H 1.48497 * 109.47107 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47081 * 300.00245 * 16 14 12 20 20 C 1.38570 * 119.97947 * 359.72298 * 8 6 5 21 21 O 1.35988 * 120.06482 * 180.27874 * 20 8 6 22 22 H 1.09000 * 109.47769 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46830 * 59.99451 * 1 2 3 24 24 H 1.09007 * 109.47032 * 299.99869 * 1 2 3 25 25 H 1.07999 * 119.99273 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.94232 * 179.97438 * 5 4 3 27 27 H 1.08992 * 109.47443 * 59.99927 * 10 9 8 28 28 H 1.09004 * 109.46804 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.46895 * 299.99406 * 10 9 8 30 30 H 1.08999 * 109.46776 * 60.00135 * 11 9 8 31 31 H 1.09004 * 109.46885 * 179.97438 * 11 9 8 32 32 H 1.09002 * 109.47386 * 300.00107 * 11 9 8 33 33 H 0.97002 * 120.00398 * 180.02562 * 15 14 12 34 34 H 0.96700 * 113.99758 * 270.25744 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2931 2.3746 0.0005 5 6 1.9213 3.6061 0.0000 6 6 3.3039 3.6809 -0.0005 7 9 3.9142 4.8861 -0.0005 8 6 4.0616 2.5224 -0.0011 9 6 5.5663 2.6059 -0.0022 10 6 5.9954 4.0738 -0.0475 11 6 6.1142 1.9533 1.2686 12 6 6.1083 1.8864 -1.2103 13 1 5.4308 1.4205 -1.9105 14 6 7.4693 1.8230 -1.4217 15 7 8.2945 2.3899 -0.5689 16 14 8.1413 0.9317 -2.9195 17 1 7.6161 1.5708 -4.1528 18 1 9.6244 1.0063 -2.9159 19 1 7.7176 -0.4911 -2.8804 20 6 3.4361 1.2859 0.0047 21 8 4.1788 0.1468 0.0099 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8901 25 1 0.2146 2.3189 0.0014 26 1 1.3326 4.5116 0.0000 27 1 5.6034 4.5941 0.8262 28 1 7.0838 4.1342 -0.0488 29 1 5.6051 4.5387 -0.9528 30 1 5.8084 0.9076 1.3008 31 1 7.2026 2.0133 1.2675 32 1 5.7221 2.4737 2.1424 33 1 9.2520 2.3456 -0.7178 34 1 4.3968 -0.1846 -0.8720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:17 Heat of formation + Delta-G solvation = -84.718026 kcal Electronic energy + Delta-G solvation = -19752.790630 eV Core-core repulsion = 16566.771953 eV Total energy + Delta-G solvation = -3186.018677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.32129 -39.96280 -37.71887 -35.63239 -34.94936 -31.47309 -29.12414 -28.47229 -26.87569 -25.65405 -25.15573 -22.28891 -21.78284 -19.48653 -17.98101 -17.24039 -16.49819 -16.04294 -15.74437 -15.39607 -14.92128 -14.81674 -14.34355 -13.88614 -13.52169 -13.03656 -12.63122 -12.22536 -12.14665 -11.84075 -11.38067 -11.19931 -11.03333 -10.88024 -10.76853 -10.55303 -10.30705 -10.22554 -9.98259 -9.38203 -9.13546 -8.91237 -8.27702 -7.91263 -7.52985 -5.95786 -4.07464 1.63308 1.75180 3.30424 3.35772 3.37374 3.48597 3.98899 4.41359 4.70422 4.94691 5.14248 5.19616 5.25027 5.31026 5.42783 5.50291 5.69190 6.10466 6.26826 6.42242 6.60518 6.69705 6.86701 7.01540 7.10383 7.22851 7.32219 7.49920 7.58326 7.71706 7.76066 8.15831 8.19437 8.42313 8.48781 8.87923 9.55968 11.04482 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.008650 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.295856 B = 3236.163036 C = 3953.310708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.080 3.920 4 C -0.195 4.195 5 C -0.134 4.134 6 C 0.069 3.931 7 F -0.131 7.131 8 C -0.053 4.053 9 C 0.105 3.895 10 C -0.138 4.138 11 C -0.128 4.128 12 C -0.498 4.498 13 H 0.051 0.949 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.114 3.886 21 O -0.468 6.468 22 H 0.095 0.905 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.022 0.978 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.003 0.997 33 H 0.261 0.739 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.702 -1.248 0.572 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.035 3.965 4 C -0.214 4.214 5 C -0.153 4.153 6 C 0.050 3.950 7 F -0.110 7.110 8 C -0.055 4.055 9 C 0.105 3.895 10 C -0.195 4.195 11 C -0.186 4.186 12 C -0.537 4.537 13 H 0.069 0.931 14 C -0.133 4.133 15 N -0.519 5.519 16 Si 0.719 3.281 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.067 3.933 21 O -0.277 6.277 22 H 0.113 0.887 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.415 -1.322 1.212 12.544 hybrid contribution 0.141 -0.111 -1.392 1.404 sum -12.274 -1.433 -0.180 12.359 Atomic orbital electron populations 1.22993 0.79473 1.03386 1.00948 1.86155 1.20361 1.26509 1.89174 1.19539 0.91882 0.84502 1.00621 1.20664 0.99388 0.91204 1.10096 1.20804 0.92773 0.98125 1.03616 1.17359 0.89867 0.80930 1.06868 1.91491 1.82761 1.42683 1.94045 1.21046 1.00215 0.89680 0.94537 1.17208 0.82179 0.94457 0.95697 1.22302 1.03746 0.95722 0.97763 1.21852 1.03928 0.98913 0.93873 1.20768 0.91389 1.34742 1.06756 0.93119 1.24858 0.96856 0.95317 0.96254 1.69816 1.02877 1.43751 1.35500 0.86672 0.77908 0.80237 0.83245 1.20454 1.21286 1.20191 1.17248 0.85039 0.86888 1.04076 1.84802 1.71551 1.38104 1.33287 0.88674 0.93030 0.93020 0.85241 0.85328 0.95912 0.90447 0.94706 0.93376 0.89556 0.97797 0.92896 0.75687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.95 10.28 -34.40 -0.35 -5.31 16 3 C 0.08 1.42 6.70 -39.14 -0.26 1.16 16 4 C -0.19 -3.00 9.03 -39.47 -0.36 -3.36 16 5 C -0.13 -2.22 10.02 -39.50 -0.40 -2.62 16 6 C 0.07 1.41 7.06 -39.43 -0.28 1.13 16 7 F -0.13 -2.75 12.23 2.25 0.03 -2.73 16 8 C -0.05 -1.19 4.73 -104.43 -0.49 -1.68 16 9 C 0.10 2.60 0.48 -156.81 -0.08 2.52 16 10 C -0.14 -3.44 6.61 37.16 0.25 -3.20 16 11 C -0.13 -3.20 8.05 37.16 0.30 -2.91 16 12 C -0.50 -12.99 6.75 -34.44 -0.23 -13.22 16 13 H 0.05 1.29 6.90 -52.49 -0.36 0.93 16 14 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 15 N -0.88 -24.11 9.35 55.43 0.52 -23.59 16 16 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 C 0.11 2.35 6.18 -39.12 -0.24 2.11 16 21 O -0.47 -9.74 10.22 -34.25 -0.35 -10.09 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 24 H 0.05 0.49 7.66 -51.92 -0.40 0.09 16 25 H 0.13 1.53 6.29 -52.49 -0.33 1.20 16 26 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.02 0.53 6.63 -51.93 -0.34 0.18 16 28 H 0.08 2.09 6.10 -51.93 -0.32 1.77 16 29 H 0.03 0.86 6.90 -51.93 -0.36 0.50 16 30 H 0.05 1.19 6.26 -51.93 -0.32 0.87 16 31 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.39 7.12 8.15 45.56 0.37 7.49 16 LS Contribution 274.77 15.07 4.14 4.14 Total: -1.00 -29.16 274.77 -5.11 -34.27 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.18 Total: 4.78 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.89 Total: -17.06 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.52 Total: -23.59 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.70 Total: -15.40 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.03 Total: -2.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.16 -5.11 -34.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.448 kcal (2) G-P(sol) polarization free energy of solvation -29.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds