Wall clock time and date at job start Mon Mar 30 2020 06:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35989 * 117.00218 * 2 1 4 4 C 1.38562 * 120.06211 * 359.97397 * 3 2 1 5 5 C 1.38422 * 119.98069 * 180.02562 * 4 3 2 6 6 F 1.35100 * 119.95473 * 179.97438 * 5 4 3 7 7 C 1.38453 * 120.09400 * 359.97006 * 5 4 3 8 8 C 1.38255 * 120.11777 * 0.02562 * 7 5 4 9 9 C 1.50702 * 119.98469 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47098 * 265.00046 * 9 8 7 11 11 C 1.50707 * 109.47129 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99717 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00040 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99847 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00026 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47076 * 90.00466 * 15 13 11 17 17 H 1.48506 * 109.47288 * 210.00335 * 15 13 11 18 18 H 1.48499 * 109.47142 * 330.00058 * 15 13 11 19 19 C 1.38536 * 120.02687 * 0.02562 * 8 7 5 20 20 O 1.36035 * 120.05223 * 180.02562 * 19 8 7 21 21 C 1.42903 * 116.99826 * 89.99266 * 20 19 8 22 22 H 1.09007 * 109.47095 * 60.00236 * 1 2 3 23 23 H 1.08997 * 109.47399 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47395 * 300.00711 * 1 2 3 25 25 H 1.08003 * 120.01026 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.94210 * 180.27783 * 7 5 4 27 27 H 1.08994 * 109.47193 * 25.00100 * 9 8 7 28 28 H 1.08998 * 109.46699 * 145.00204 * 9 8 7 29 29 H 1.08999 * 109.47175 * 299.99627 * 10 9 8 30 30 H 1.08998 * 109.47216 * 60.00475 * 10 9 8 31 31 H 0.97001 * 119.99545 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.46724 * 179.97438 * 21 20 19 33 33 H 1.08990 * 109.47519 * 300.00356 * 21 20 19 34 34 H 1.09005 * 109.47091 * 60.00855 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2930 2.3746 -0.0005 5 6 1.9233 3.6070 -0.0011 6 9 1.1882 4.7405 -0.0021 7 6 3.3059 3.6797 -0.0004 8 6 4.0615 2.5219 0.0002 9 6 5.5662 2.6045 0.0003 10 6 6.0825 2.5063 -1.4366 11 6 7.5873 2.5883 -1.4364 12 1 8.1219 2.6998 -0.5046 13 6 8.2814 2.5220 -2.6258 14 7 9.5946 2.5941 -2.6257 15 14 7.3567 2.3299 -4.2375 16 1 7.0353 3.6716 -4.7867 17 1 8.2013 1.5873 -5.2073 18 1 6.0984 1.5780 -3.9996 19 6 3.4359 1.2858 -0.0003 20 8 4.1788 0.1463 0.0008 21 6 4.5317 -0.3968 1.2746 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 0.2144 2.3195 -0.0014 26 1 3.7950 4.6426 0.0037 27 1 5.8779 3.5546 0.4342 28 1 5.9750 1.7842 0.5901 29 1 5.7708 1.5562 -1.8705 30 1 5.6736 3.3267 -2.0264 31 1 10.0829 2.5471 -3.4625 32 1 5.1216 -1.3024 1.1327 33 1 5.1165 0.3347 1.8322 34 1 3.6255 -0.6375 1.8306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260329434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:40 Heat of formation + Delta-G solvation = -103.024475 kcal Electronic energy + Delta-G solvation = -18793.693256 eV Core-core repulsion = 15606.880752 eV Total energy + Delta-G solvation = -3186.812504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.87770 -40.47587 -38.25224 -36.70332 -33.91247 -31.98362 -29.81641 -29.35916 -27.48974 -26.61980 -25.10804 -22.36975 -21.86229 -20.25631 -18.08149 -17.48558 -17.33272 -16.66180 -16.13572 -15.99648 -15.37241 -15.03152 -14.68853 -14.39317 -14.17909 -13.87833 -13.24753 -12.81448 -12.69370 -12.53782 -12.27960 -11.85573 -11.63597 -11.47414 -11.31683 -10.95980 -10.79572 -10.18247 -9.87269 -9.81576 -9.59123 -9.16506 -8.50059 -8.47578 -8.07757 -6.01372 -3.99283 1.09135 1.30441 3.08487 3.35549 3.42286 3.43530 3.50490 4.02444 4.25689 4.50178 4.71310 4.87656 4.96427 5.06038 5.13466 5.28860 5.33714 5.44878 5.51765 5.56627 5.73316 5.84095 5.97936 6.04200 6.20178 6.40020 6.58489 6.66243 6.84966 7.09255 7.30399 7.47590 7.77322 7.82054 8.54891 9.02349 9.61484 11.11881 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.006353 C = 0.005747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.021152 B = 4406.474914 C = 4870.809178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.137 3.863 4 C -0.252 4.252 5 C 0.132 3.868 6 F -0.139 7.139 7 C -0.177 4.177 8 C -0.016 4.016 9 C -0.066 4.066 10 C -0.004 4.004 11 C -0.519 4.519 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.904 5.904 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.263 1.263 19 C 0.054 3.946 20 O -0.311 6.311 21 C 0.035 3.965 22 H 0.056 0.944 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.547 -3.258 7.687 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.091 3.909 4 C -0.271 4.271 5 C 0.112 3.888 6 F -0.118 7.118 7 C -0.196 4.196 8 C -0.016 4.016 9 C -0.104 4.104 10 C -0.041 4.041 11 C -0.556 4.556 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.543 5.543 15 Si 0.702 3.298 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.187 1.187 19 C 0.010 3.990 20 O -0.227 6.227 21 C -0.059 4.059 22 H 0.075 0.925 23 H 0.119 0.881 24 H 0.073 0.927 25 H 0.157 0.843 26 H 0.161 0.839 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -18.273 -3.528 7.419 20.035 hybrid contribution -0.911 0.364 -0.756 1.239 sum -19.184 -3.164 6.663 20.553 Atomic orbital electron populations 1.23103 0.78679 1.03985 1.01376 1.86200 1.21057 1.25821 1.88340 1.19101 0.91336 0.84239 0.96274 1.20871 1.00654 0.90813 1.14777 1.17325 0.89102 0.81327 1.00998 1.91483 1.77254 1.49228 1.93796 1.20949 0.91187 1.00032 1.07470 1.20404 0.98622 0.90186 0.92414 1.20644 0.85830 1.02430 1.01453 1.19542 0.96959 0.97061 0.90586 1.21084 0.89336 1.50277 0.94949 0.90929 1.24969 0.94684 0.94516 0.99060 1.69911 1.06247 1.51085 1.27060 0.86834 0.80542 0.78655 0.83724 1.20327 1.21348 1.18697 1.17838 0.85889 0.87095 1.08216 1.86193 1.70072 1.37865 1.28620 1.22976 0.99260 0.98826 0.84836 0.92529 0.88118 0.92689 0.84262 0.83939 0.91091 0.90844 0.95594 0.96978 0.92754 0.88846 0.93395 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.17 10.28 -34.25 -0.35 -4.52 16 3 C 0.14 2.09 6.70 -39.13 -0.26 1.83 16 4 C -0.25 -3.43 9.01 -39.39 -0.36 -3.79 16 5 C 0.13 1.94 7.30 -39.43 -0.29 1.66 16 6 F -0.14 -1.98 17.26 2.25 0.04 -1.94 16 7 C -0.18 -2.82 9.65 -39.50 -0.38 -3.20 16 8 C -0.02 -0.28 5.14 -104.50 -0.54 -0.81 16 9 C -0.07 -1.32 5.00 -27.88 -0.14 -1.46 16 10 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 16 11 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 12 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 13 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 14 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 15 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 18 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 19 C 0.05 0.95 5.71 -39.14 -0.22 0.73 16 20 O -0.31 -5.66 9.47 -34.40 -0.33 -5.99 16 21 C 0.04 0.49 10.80 101.05 1.09 1.58 16 22 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 25 H 0.14 1.50 6.30 -52.48 -0.33 1.17 16 26 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 27 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 28 H 0.07 1.45 6.42 -51.93 -0.33 1.11 16 29 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 30 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.64 7.18 -51.93 -0.37 0.27 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 294.30 15.07 4.43 4.43 Total: -1.00 -32.42 294.30 -5.04 -37.46 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -4.29 Total: -4.06 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -0.65 Total: -15.72 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: 0.77 Total: -27.30 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.68 Total: -10.51 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.42 -5.04 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260329434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.562 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds