Wall clock time and date at job start Mon Mar 30 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99917 * 2 1 4 4 C 1.50700 * 109.46841 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.98624 * 359.97438 * 4 3 2 6 6 C 1.38223 * 120.12753 * 179.72044 * 5 4 3 7 7 C 1.38230 * 120.09088 * 0.27921 * 6 5 4 8 8 C 1.50704 * 120.00888 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46658 * 264.99616 * 8 7 6 10 10 H 1.07995 * 120.00748 * 0.02562 * 9 8 7 11 11 C 1.37887 * 119.99643 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00219 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99720 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47399 * 89.99746 * 13 11 9 15 15 H 1.48505 * 109.46987 * 210.00133 * 13 11 9 16 16 H 1.48504 * 109.47465 * 329.99594 * 13 11 9 17 17 C 1.38616 * 119.96976 * 359.97438 * 7 6 5 18 18 O 1.35962 * 120.05579 * 180.02562 * 17 7 6 19 19 C 1.42906 * 116.99889 * 90.00293 * 18 17 7 20 20 C 1.38292 * 119.98718 * 180.26960 * 4 3 2 21 21 F 1.35108 * 120.04514 * 0.02562 * 20 4 3 22 22 H 1.09002 * 109.47840 * 300.00349 * 1 2 3 23 23 H 1.09000 * 109.47100 * 60.00447 * 1 2 3 24 24 H 1.08998 * 109.47472 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47314 * 59.99748 * 3 2 1 26 26 H 1.08994 * 109.47213 * 299.99356 * 3 2 1 27 27 H 1.08002 * 119.93913 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.95555 * 180.29803 * 6 5 4 29 29 H 1.08997 * 109.47194 * 24.99741 * 8 7 6 30 30 H 1.09001 * 109.46743 * 144.99745 * 8 7 6 31 31 H 0.96996 * 120.00520 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.46817 * 59.99562 * 19 18 17 33 33 H 1.08992 * 109.46800 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.46891 * 299.99620 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1069 -0.0623 0.0016 6 6 5.4845 -0.1749 -0.0036 7 6 6.2727 0.9606 -0.0041 8 6 7.7745 0.8357 -0.0104 9 6 8.2909 0.9142 1.4032 10 1 7.6008 1.0414 2.2241 11 6 9.6448 0.8237 1.6485 12 7 10.4853 0.6684 0.6491 13 14 10.2849 0.9203 3.4007 14 1 10.3400 -0.4445 3.9836 15 1 11.6465 1.5130 3.3983 16 1 9.3770 1.7692 4.2134 17 6 5.6810 2.2142 0.0002 18 8 6.4546 3.3323 -0.0007 19 6 6.8190 3.8680 -1.2745 20 6 4.2961 2.3258 0.0064 21 9 3.7158 3.5459 0.0120 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.4935 -0.9513 0.0016 28 1 5.9457 -1.1515 -0.0077 29 1 8.0577 -0.1215 -0.4480 30 1 8.2040 1.6459 -0.5997 31 1 11.4376 0.6043 0.8216 32 1 5.9183 4.1344 -1.8277 33 1 7.4339 4.7566 -1.1324 34 1 7.3822 3.1217 -1.8348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260329480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:26 Heat of formation + Delta-G solvation = -109.872975 kcal Electronic energy + Delta-G solvation = -18735.094695 eV Core-core repulsion = 15547.985218 eV Total energy + Delta-G solvation = -3187.109478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.51924 -39.42309 -38.06889 -36.57105 -33.52739 -31.72618 -29.56183 -28.75178 -26.86186 -26.09199 -25.06697 -22.65809 -21.95110 -20.43398 -17.32075 -16.79258 -16.51539 -16.33882 -16.06542 -15.60638 -15.38528 -15.06886 -14.51637 -14.41848 -14.02269 -13.58786 -12.93627 -12.77252 -12.47905 -12.31777 -11.91988 -11.50351 -11.46938 -11.28455 -11.07562 -10.83070 -10.68462 -10.44309 -9.92467 -9.75101 -9.41940 -9.28832 -8.39884 -8.10839 -7.87614 -6.02735 -4.04722 1.56844 1.67410 3.33371 3.39252 3.45186 3.56509 3.90254 4.35791 4.49637 4.67577 4.90522 5.15577 5.18384 5.27105 5.32512 5.43249 5.48071 5.50750 5.61392 5.69910 5.83161 5.93370 6.02150 6.21107 6.47449 6.56785 6.78105 6.89346 7.11830 7.20048 7.49356 7.68329 7.92715 8.06698 8.31193 8.97936 9.57985 11.07705 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.005847 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.266779 B = 4787.954200 C = 5322.026473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.116 3.884 4 C -0.148 4.148 5 C -0.075 4.075 6 C -0.124 4.124 7 C -0.025 4.025 8 C 0.053 3.947 9 C -0.502 4.502 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.059 3.941 18 O -0.313 6.313 19 C 0.037 3.963 20 C 0.079 3.921 21 F -0.142 7.142 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 1.059 -4.079 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.040 3.960 4 C -0.149 4.149 5 C -0.093 4.093 6 C -0.143 4.143 7 C -0.025 4.025 8 C 0.016 3.984 9 C -0.540 4.540 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.014 3.986 18 O -0.229 6.229 19 C -0.057 4.057 20 C 0.059 3.941 21 F -0.120 7.120 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.148 1.036 -3.968 15.693 hybrid contribution 0.070 0.515 0.772 0.931 sum -15.077 1.551 -3.196 15.490 Atomic orbital electron populations 1.22735 0.80977 1.02772 0.99976 1.87851 1.19564 1.27443 1.95459 1.20974 0.89852 0.84647 1.00557 1.19280 0.93852 0.92715 1.09025 1.20803 0.94513 0.96292 0.97707 1.21144 0.92661 0.98932 1.01531 1.21039 1.00240 0.90367 0.90873 1.18329 0.83200 0.98425 0.98434 1.20941 0.91837 1.49775 0.91435 0.92472 1.24956 0.96800 0.95181 0.97242 1.69942 1.02748 1.50166 1.30697 0.86518 0.78146 0.78245 0.84719 1.20622 1.21182 1.19756 1.18428 0.86562 0.87817 1.05752 1.86146 1.68320 1.40014 1.28385 1.22934 0.98919 0.98872 0.84985 1.17788 0.90501 0.79404 1.06424 1.91414 1.84630 1.41832 1.94157 0.94046 0.94096 0.89509 0.92158 0.92263 0.84655 0.85029 0.95004 0.94693 0.92882 0.94650 0.89119 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.00 9.18 -35.23 -0.32 -5.33 16 3 C 0.12 1.58 5.90 36.01 0.21 1.79 16 4 C -0.15 -2.49 5.88 -104.58 -0.62 -3.10 16 5 C -0.08 -1.26 9.37 -39.56 -0.37 -1.63 16 6 C -0.12 -2.36 9.68 -39.59 -0.38 -2.74 16 7 C -0.02 -0.54 5.08 -104.48 -0.53 -1.07 16 8 C 0.05 1.35 4.83 -29.03 -0.14 1.21 16 9 C -0.50 -14.19 9.09 -34.44 -0.31 -14.51 16 10 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.06 1.26 5.70 -39.18 -0.22 1.03 16 18 O -0.31 -6.83 9.56 -19.62 -0.19 -7.01 16 19 C 0.04 0.65 10.80 101.05 1.09 1.74 16 20 C 0.08 1.48 7.25 -39.30 -0.29 1.20 16 21 F -0.14 -2.56 16.64 2.25 0.04 -2.52 16 22 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.14 2.01 7.00 -52.49 -0.37 1.64 16 28 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.03 0.83 8.05 -51.93 -0.42 0.42 16 30 H 0.03 0.94 6.42 -51.93 -0.33 0.60 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.05 0.90 7.17 -51.93 -0.37 0.52 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -31.07 299.33 -5.20 -36.27 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -4.41 Total: -4.05 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.54 Total: -13.11 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.51 Total: -12.34 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.07 -5.20 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260329480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.601 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds