Wall clock time and date at job start Mon Mar 30 2020 06:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99917 * 2 1 4 4 C 1.50700 * 109.46841 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.98624 * 359.97438 * 4 3 2 6 6 C 1.38223 * 120.12753 * 179.72044 * 5 4 3 7 7 C 1.38230 * 120.09088 * 0.27921 * 6 5 4 8 8 C 1.50704 * 120.00888 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46658 * 264.99616 * 8 7 6 10 10 H 1.07995 * 120.00748 * 0.02562 * 9 8 7 11 11 C 1.37887 * 119.99643 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00219 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99720 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47399 * 89.99746 * 13 11 9 15 15 H 1.48505 * 109.46987 * 210.00133 * 13 11 9 16 16 H 1.48504 * 109.47465 * 329.99594 * 13 11 9 17 17 C 1.38616 * 119.96976 * 359.97438 * 7 6 5 18 18 O 1.35962 * 120.05579 * 180.02562 * 17 7 6 19 19 C 1.42906 * 116.99889 * 90.00293 * 18 17 7 20 20 C 1.38292 * 119.98718 * 180.26960 * 4 3 2 21 21 F 1.35108 * 120.04514 * 0.02562 * 20 4 3 22 22 H 1.09002 * 109.47840 * 300.00349 * 1 2 3 23 23 H 1.09000 * 109.47100 * 60.00447 * 1 2 3 24 24 H 1.08998 * 109.47472 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47314 * 59.99748 * 3 2 1 26 26 H 1.08994 * 109.47213 * 299.99356 * 3 2 1 27 27 H 1.08002 * 119.93913 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.95555 * 180.29803 * 6 5 4 29 29 H 1.08997 * 109.47194 * 24.99741 * 8 7 6 30 30 H 1.09001 * 109.46743 * 144.99745 * 8 7 6 31 31 H 0.96996 * 120.00520 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.46817 * 59.99562 * 19 18 17 33 33 H 1.08992 * 109.46800 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.46891 * 299.99620 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1069 -0.0623 0.0016 6 6 5.4845 -0.1749 -0.0036 7 6 6.2727 0.9606 -0.0041 8 6 7.7745 0.8357 -0.0104 9 6 8.2909 0.9142 1.4032 10 1 7.6008 1.0414 2.2241 11 6 9.6448 0.8237 1.6485 12 7 10.4853 0.6684 0.6491 13 14 10.2849 0.9203 3.4007 14 1 10.3400 -0.4445 3.9836 15 1 11.6465 1.5130 3.3983 16 1 9.3770 1.7692 4.2134 17 6 5.6810 2.2142 0.0002 18 8 6.4546 3.3323 -0.0007 19 6 6.8190 3.8680 -1.2745 20 6 4.2961 2.3258 0.0064 21 9 3.7158 3.5459 0.0120 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.6885 1.8464 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.4935 -0.9513 0.0016 28 1 5.9457 -1.1515 -0.0077 29 1 8.0577 -0.1215 -0.4480 30 1 8.2040 1.6459 -0.5997 31 1 11.4376 0.6043 0.8216 32 1 5.9183 4.1344 -1.8277 33 1 7.4339 4.7566 -1.1324 34 1 7.3822 3.1217 -1.8348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260329480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:25 Heat of formation + Delta-G solvation = -128.745501 kcal Electronic energy + Delta-G solvation = -18735.913069 eV Core-core repulsion = 15547.985218 eV Total energy + Delta-G solvation = -3187.927852 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.95768 -40.91888 -39.18339 -37.93542 -35.48438 -33.43811 -31.03287 -30.34126 -28.04731 -27.47768 -26.43535 -24.40512 -23.43104 -21.98625 -18.78638 -18.51176 -18.04611 -17.98343 -17.25890 -16.72413 -16.61602 -16.51021 -16.24604 -15.86941 -15.48545 -14.95107 -14.44904 -14.24356 -13.92322 -13.78015 -13.32870 -13.20569 -12.97746 -12.74474 -12.60996 -12.44029 -12.26367 -12.10349 -11.60678 -11.52309 -10.87805 -10.76097 -10.57021 -9.58412 -9.43028 -8.19231 -6.29580 0.08801 0.18597 1.39796 1.40976 1.52496 2.34997 2.44850 2.60360 2.98410 3.12223 3.21341 3.68324 4.05441 4.10128 4.27682 4.31370 4.37420 4.41940 4.47931 4.60589 4.62268 4.63982 4.74862 4.90917 4.99875 5.06893 5.20019 5.33302 5.37819 5.73139 5.75527 5.81366 6.16548 6.18085 6.55343 6.79165 7.37120 8.90641 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.005847 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.266779 B = 4787.954200 C = 5322.026473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.118 3.882 4 C -0.133 4.133 5 C -0.066 4.066 6 C -0.123 4.123 7 C -0.058 4.058 8 C 0.064 3.936 9 C -0.519 4.519 10 H 0.047 0.953 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.961 3.039 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.272 1.272 17 C 0.045 3.955 18 O -0.344 6.344 19 C 0.034 3.966 20 C 0.072 3.928 21 F -0.137 7.137 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.162 0.838 28 H 0.139 0.861 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.265 0.735 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.630 0.854 -3.481 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C 0.042 3.958 4 C -0.134 4.134 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.059 4.059 8 C 0.027 3.973 9 C -0.557 4.557 10 H 0.065 0.935 11 C -0.189 4.189 12 N -0.568 5.568 13 Si 0.785 3.215 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.197 1.197 17 C 0.000 4.000 18 O -0.261 6.261 19 C -0.059 4.059 20 C 0.053 3.947 21 F -0.116 7.116 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.180 0.820 28 H 0.157 0.843 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.299 0.828 -3.378 17.645 hybrid contribution 0.620 0.582 0.528 1.001 sum -16.679 1.411 -2.851 16.980 Atomic orbital electron populations 1.22984 0.78742 1.04261 1.01108 1.87804 1.21914 1.26857 1.95676 1.20984 0.87351 0.85525 1.01933 1.19697 0.95967 0.91782 1.05936 1.21022 0.93505 0.97397 0.96400 1.21263 0.93671 0.98299 1.00851 1.20764 0.98337 0.92064 0.94712 1.18008 0.86154 0.96362 0.96735 1.21213 0.92190 1.49826 0.92490 0.93496 1.25789 0.96998 0.94682 1.01394 1.70047 1.03109 1.50842 1.32762 0.85511 0.77552 0.78692 0.79696 1.19355 1.20388 1.19727 1.18595 0.87704 0.87354 1.06318 1.86064 1.68909 1.40370 1.30713 1.23114 1.00124 0.98975 0.83732 1.17739 0.89712 0.80288 1.07005 1.91420 1.84298 1.41661 1.94177 0.93059 0.92801 0.87950 0.90990 0.90482 0.82018 0.84283 0.96807 0.97033 0.92580 0.92400 0.87247 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -9.04 9.18 -148.98 -1.37 -10.41 16 3 C 0.12 2.81 5.90 71.24 0.42 3.23 16 4 C -0.13 -4.17 5.88 -19.84 -0.12 -4.29 16 5 C -0.07 -2.07 9.37 22.28 0.21 -1.86 16 6 C -0.12 -4.62 9.68 22.26 0.22 -4.40 16 7 C -0.06 -2.62 5.08 -19.77 -0.10 -2.72 16 8 C 0.06 3.44 4.83 29.10 0.14 3.58 16 9 C -0.52 -30.24 9.09 25.60 0.23 -30.01 16 10 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 11 C 0.01 0.55 5.46 84.66 0.46 1.01 16 12 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 13 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 16 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 17 C 0.04 1.93 5.70 22.53 0.13 2.05 16 18 O -0.34 -15.34 9.56 -93.12 -0.89 -16.23 16 19 C 0.03 1.20 10.80 113.37 1.22 2.43 16 20 C 0.07 2.65 7.25 22.45 0.16 2.81 16 21 F -0.14 -4.74 16.64 44.97 0.75 -3.99 16 22 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.16 4.29 7.00 -2.91 -0.02 4.27 16 28 H 0.14 4.90 8.06 -2.91 -0.02 4.87 16 29 H 0.01 0.76 8.05 -2.39 -0.02 0.74 16 30 H 0.01 0.66 6.42 -2.39 -0.02 0.64 16 31 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.04 1.44 7.17 -2.39 -0.02 1.42 16 Total: -1.00 -67.51 299.33 6.13 -61.38 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.10 Total: 4.00 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 4.23 Total: -26.57 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -2.26 Total: -26.64 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.75 Total: -3.99 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.51 6.13 -61.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260329480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.364 kcal (2) G-P(sol) polarization free energy of solvation -67.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds