Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00307 * 2 1 4 4 H 1.48496 * 109.47298 * 268.55050 * 3 2 1 5 5 H 1.48502 * 109.47175 * 28.54601 * 3 2 1 6 6 H 1.48506 * 109.47550 * 148.54696 * 3 2 1 7 7 C 1.37884 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99516 * 31.13027 * 7 2 1 9 9 C 1.50701 * 120.00187 * 211.12218 * 7 2 1 10 10 F 1.39907 * 109.46988 * 298.53722 * 9 7 2 11 11 C 1.52998 * 109.46879 * 178.54139 * 9 7 2 12 12 C 1.52994 * 109.47287 * 53.82501 * 11 9 7 13 13 C 1.53010 * 109.47009 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46890 * 300.00022 * 13 12 11 15 15 C 1.53003 * 109.47340 * 60.00058 * 14 13 12 16 16 C 1.52995 * 109.47006 * 173.82936 * 11 9 7 17 17 C 1.52994 * 109.47165 * 58.53687 * 9 7 2 18 18 F 1.39891 * 109.47224 * 188.88345 * 17 9 7 19 19 F 1.39903 * 109.47188 * 308.88856 * 17 9 7 20 20 F 1.39901 * 109.47128 * 68.88039 * 17 9 7 21 21 H 0.97007 * 120.00021 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46890 * 293.82628 * 11 9 7 23 23 H 1.08996 * 109.47605 * 60.00353 * 12 11 9 24 24 H 1.08993 * 109.47352 * 299.99534 * 12 11 9 25 25 H 1.08994 * 109.47171 * 180.02562 * 13 12 11 26 26 H 1.09005 * 109.47061 * 60.00192 * 13 12 11 27 27 H 1.09001 * 109.46891 * 179.97438 * 14 13 12 28 28 H 1.08995 * 109.47465 * 299.99887 * 14 13 12 29 29 H 1.09005 * 109.46952 * 59.99621 * 15 14 13 30 30 H 1.09000 * 109.47423 * 179.97438 * 15 14 13 31 31 H 1.09005 * 109.47045 * 299.99597 * 16 11 9 32 32 H 1.09004 * 109.47246 * 59.99469 * 16 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.5273 2.0286 -1.3996 5 1 1.4316 2.6613 0.6691 6 1 3.5310 1.4492 0.7306 7 6 2.0045 -1.1941 0.0005 8 1 1.5810 -2.0623 -0.4827 9 6 3.3488 -1.2878 0.6751 10 9 4.2443 -0.4102 0.0543 11 6 3.8771 -2.7193 0.5628 12 6 3.8744 -3.1502 -0.9052 13 6 4.4021 -4.5820 -1.0175 14 6 5.8296 -4.6437 -0.4704 15 6 5.8323 -4.2128 0.9977 16 6 5.3046 -2.7805 1.1097 17 6 3.2061 -0.9111 2.1511 18 9 4.4753 -0.8008 2.7290 19 9 2.5371 0.3130 2.2574 20 9 2.4752 -1.9012 2.8165 21 1 -0.4850 0.8401 -0.0004 22 1 3.2382 -3.3886 1.1390 23 1 4.5132 -2.4810 -1.4815 24 1 2.8574 -3.1067 -1.2948 25 1 4.4006 -4.8888 -2.0633 26 1 3.7629 -5.2510 -0.4413 27 1 6.2053 -5.6638 -0.5499 28 1 6.4688 -3.9748 -1.0465 29 1 5.1930 -4.8818 1.5739 30 1 6.8492 -4.2572 1.3876 31 1 5.9435 -2.1112 0.5334 32 1 5.3065 -2.4735 2.1556 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260336217.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = -214.217159 kcal Electronic energy + Delta-G solvation = -21216.253863 eV Core-core repulsion = 17482.762942 eV Total energy + Delta-G solvation = -3733.490921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.38475 -46.98525 -46.82325 -46.29785 -37.98922 -33.44657 -31.73982 -30.35644 -28.05595 -25.05251 -22.73177 -22.12378 -20.25335 -19.17111 -17.99712 -17.57026 -17.40416 -16.44974 -15.49350 -14.82269 -14.31135 -13.89229 -13.68918 -13.57113 -13.43070 -13.24172 -13.16840 -13.01824 -12.88758 -12.67655 -12.60437 -12.28037 -11.91601 -11.59733 -11.07104 -10.81044 -10.72653 -10.59611 -10.43925 -10.01960 -9.91366 -9.59062 -9.29996 -8.97279 -8.52143 -6.52811 -4.58084 3.27532 3.41176 3.50548 3.80413 4.28670 4.63185 4.75887 4.89031 5.10781 5.13696 5.25147 5.30076 5.61270 5.65336 5.75340 5.91400 5.92829 5.99178 6.01715 6.24124 6.34730 6.40136 6.51588 6.58405 6.65441 6.74517 6.87158 7.04626 7.15944 7.95459 8.57989 9.11514 10.52543 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.027386 B = 0.010958 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.182690 B = 2554.619856 C = 2893.537401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.100 3.900 3 Si 0.913 3.087 4 H -0.295 1.295 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.587 4.587 8 H 0.102 0.898 9 C 0.195 3.805 10 F -0.208 7.208 11 C -0.088 4.088 12 C -0.102 4.102 13 C -0.119 4.119 14 C -0.119 4.119 15 C -0.114 4.114 16 C -0.136 4.136 17 C 0.422 3.578 18 F -0.199 7.199 19 F -0.175 7.175 20 F -0.177 7.177 21 H 0.273 0.727 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.390 -5.886 1.301 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.113 4.113 3 Si 0.743 3.257 4 H -0.223 1.223 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.621 4.621 8 H 0.120 0.880 9 C 0.175 3.825 10 F -0.189 7.189 11 C -0.107 4.107 12 C -0.139 4.139 13 C -0.157 4.157 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.173 4.173 17 C 0.368 3.632 18 F -0.181 7.181 19 F -0.156 7.156 20 F -0.159 7.159 21 H 0.083 0.917 22 H 0.104 0.896 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.189 -5.776 1.328 10.109 hybrid contribution 0.276 1.156 0.309 1.228 sum 8.465 -4.620 1.636 9.782 Atomic orbital electron populations 1.70124 1.07165 1.28718 1.40121 1.25186 0.94610 1.00529 0.90995 0.86907 0.80555 0.81338 0.76894 1.22332 1.22760 1.18934 1.20708 0.98771 1.00262 1.42385 0.87998 1.19740 0.90983 0.87193 0.84584 1.92743 1.71123 1.71667 1.83342 1.21461 0.95947 0.94605 0.98693 1.21472 1.02723 0.94760 0.94974 1.21574 0.95974 0.97886 1.00222 1.21548 0.97439 1.00250 0.96390 1.21494 1.00300 0.96847 0.96485 1.21949 0.96523 0.96798 1.02075 1.22286 0.72559 0.74439 0.93963 1.93029 1.41592 1.95762 1.87712 1.92744 1.81295 1.45460 1.96139 1.93079 1.78111 1.61860 1.82826 0.91685 0.89555 0.91903 0.90006 0.92404 0.92262 0.92793 0.92198 0.92237 0.92546 0.91422 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.81 13.96 55.43 0.77 -23.04 16 2 C 0.10 2.76 4.55 -17.82 -0.08 2.68 16 3 Si 0.91 23.36 24.01 -169.99 -4.08 19.28 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.26 -6.75 5.16 56.52 0.29 -6.46 16 7 C -0.59 -15.54 7.98 -34.44 -0.27 -15.81 16 8 H 0.10 2.77 6.47 -52.48 -0.34 2.43 16 9 C 0.20 4.57 0.29 -91.77 -0.03 4.54 16 10 F -0.21 -5.03 12.06 2.25 0.03 -5.00 16 11 C -0.09 -1.71 1.51 -90.63 -0.14 -1.85 16 12 C -0.10 -1.81 4.78 -26.73 -0.13 -1.94 16 13 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 14 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 15 C -0.11 -1.57 5.93 -26.70 -0.16 -1.73 16 16 C -0.14 -2.31 4.52 -26.71 -0.12 -2.43 16 17 C 0.42 9.91 2.35 37.15 0.09 9.99 16 18 F -0.20 -4.27 14.31 2.25 0.03 -4.23 16 19 F -0.17 -4.43 11.38 2.25 0.03 -4.40 16 20 F -0.18 -4.04 16.25 2.25 0.04 -4.00 16 21 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.09 1.68 7.40 -51.93 -0.38 1.30 16 23 H 0.06 1.14 7.97 -51.93 -0.41 0.73 16 24 H 0.08 1.58 6.23 -51.93 -0.32 1.26 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.18 7.66 -51.93 -0.40 0.78 16 32 H 0.07 1.24 5.64 -51.93 -0.29 0.95 16 LS Contribution 253.63 15.07 3.82 3.82 Total: -1.00 -27.60 253.63 -4.45 -32.06 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -3.93 Total: -4.39 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.16 Total: -10.09 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.77 Total: -23.04 kcal Atomic # 9 Polarization: -17.76 SS G_CDS: 0.12 Total: -17.64 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.08 Total: 19.28 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.60 -4.45 -32.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336217.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.162 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds