Wall clock time and date at job start Mon Mar 30 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99906 * 2 1 4 4 C 1.39746 * 110.99989 * 123.95539 * 2 1 3 5 5 C 1.38880 * 120.07704 * 300.02216 * 4 2 1 6 6 C 1.38123 * 119.93527 * 179.70465 * 5 4 2 7 7 C 1.38288 * 120.09526 * 0.52927 * 6 5 4 8 8 C 1.50697 * 119.92239 * 179.76907 * 7 6 5 9 9 H 1.08999 * 109.47706 * 199.72519 * 8 7 6 10 10 N 1.46906 * 109.47064 * 319.72315 * 8 7 6 11 11 C 1.50701 * 109.47065 * 79.72324 * 8 7 6 12 12 H 1.08001 * 120.00367 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99893 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99853 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00063 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47372 * 59.99425 * 15 13 11 17 17 H 1.48496 * 109.47345 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47021 * 299.99842 * 15 13 11 19 19 C 1.38274 * 120.15477 * 359.49330 * 7 6 5 20 20 C 1.38206 * 120.06341 * 0.22800 * 19 7 6 21 21 Cl 1.73600 * 120.04684 * 180.02562 * 20 19 7 22 22 H 1.09000 * 109.47323 * 296.04460 * 1 2 3 23 23 H 1.08998 * 109.47171 * 56.04906 * 1 2 3 24 24 H 1.08995 * 109.46992 * 176.04194 * 1 2 3 25 25 H 1.08997 * 109.47251 * 183.95410 * 3 2 1 26 26 H 1.09004 * 109.47579 * 303.95402 * 3 2 1 27 27 H 1.09001 * 109.47259 * 63.95409 * 3 2 1 28 28 H 1.07995 * 120.03456 * 359.97438 * 5 4 2 29 29 H 1.08004 * 119.94835 * 180.28146 * 6 5 4 30 30 H 1.00896 * 111.00309 * 296.04459 * 10 8 7 31 31 H 1.00902 * 110.99923 * 60.00622 * 10 8 7 32 32 H 0.96998 * 119.99658 * 179.97438 * 14 13 11 33 33 H 1.08007 * 119.96704 * 180.25516 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9698 -0.7287 1.0822 5 6 1.6578 -0.3489 2.3811 6 6 2.1494 -1.0749 3.4484 7 6 2.9605 -2.1725 3.2256 8 6 3.4989 -2.9587 4.3931 9 1 4.3641 -3.5389 4.0724 10 7 3.8982 -2.0348 5.4631 11 6 2.4315 -3.8905 4.9063 12 1 1.4604 -3.9116 4.4341 13 6 2.6945 -4.7161 5.9789 14 7 3.8772 -4.6907 6.5536 15 14 1.3717 -5.8716 6.6146 16 1 0.9689 -6.8059 5.5330 17 1 1.9022 -6.6462 7.7651 18 1 0.1923 -5.0816 7.0508 19 6 3.2739 -2.5538 1.9339 20 6 2.7809 -1.8355 0.8611 21 17 3.1741 -2.3150 -0.7604 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0827 1.3433 -0.0709 26 1 1.5898 1.9164 -0.8524 27 1 1.7043 1.8724 0.9233 28 1 1.0280 0.5107 2.5564 29 1 1.9032 -0.7824 4.4585 30 1 4.6580 -1.4420 5.1642 31 1 3.1129 -1.4850 5.7780 32 1 4.0621 -5.2712 7.3084 33 1 3.9043 -3.4141 1.7633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260342955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:54 Heat of formation + Delta-G solvation = 29.077802 kcal Electronic energy + Delta-G solvation = -16529.628781 eV Core-core repulsion = 13809.173788 eV Total energy + Delta-G solvation = -2720.454993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.67348 -36.90649 -36.04475 -33.94886 -31.52616 -30.35604 -28.85024 -27.59700 -26.09186 -24.29664 -22.51076 -21.57111 -19.87069 -16.88295 -16.51041 -15.63980 -15.25697 -15.00771 -14.42277 -14.27263 -13.87413 -13.68577 -13.25190 -12.85685 -12.47484 -12.28764 -12.20838 -11.72287 -11.56680 -11.49146 -11.03189 -10.95107 -10.72048 -10.66211 -10.41740 -9.85836 -9.30806 -8.48762 -8.46988 -8.37619 -7.96018 -7.15959 -5.92502 -4.08195 1.62312 1.67474 2.61193 3.32875 3.37806 3.40408 3.91502 4.06247 4.46608 5.09745 5.16310 5.28831 5.32310 5.40906 5.45194 5.56670 5.78589 5.81664 5.84585 5.86924 5.97823 6.15606 6.25739 6.62533 6.74536 6.88807 6.92294 7.10150 7.46428 7.51379 7.85284 8.11111 8.55318 8.92719 9.07945 9.60831 11.11702 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.005797 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.631653 B = 4828.511799 C = 4980.275927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.501 5.501 3 C 0.031 3.969 4 C 0.060 3.940 5 C -0.138 4.138 6 C -0.110 4.110 7 C -0.058 4.058 8 C 0.254 3.746 9 H 0.050 0.950 10 N -0.808 5.808 11 C -0.534 4.534 12 H 0.053 0.947 13 C 0.085 3.915 14 N -0.846 5.846 15 Si 0.886 3.114 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.110 4.110 20 C -0.007 4.007 21 Cl -0.074 7.074 22 H 0.029 0.971 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.299 0.701 31 H 0.318 0.682 32 H 0.257 0.743 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 9.912 -10.845 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.221 5.221 3 C -0.116 4.116 4 C -0.034 4.034 5 C -0.158 4.158 6 C -0.129 4.129 7 C -0.061 4.061 8 C 0.144 3.856 9 H 0.068 0.932 10 N -0.334 5.334 11 C -0.572 4.572 12 H 0.072 0.928 13 C -0.122 4.122 14 N -0.480 5.480 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.130 4.130 20 C -0.035 4.035 21 Cl -0.045 7.045 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.055 8.910 -10.852 14.370 hybrid contribution -1.383 0.485 0.304 1.497 sum -4.438 9.395 -10.548 14.807 Atomic orbital electron populations 1.22420 0.86258 1.02646 1.00373 1.59530 1.08121 1.13676 1.40801 1.22410 1.01035 0.87796 1.00365 1.18280 1.00255 0.95850 0.89035 1.21399 1.01416 1.00506 0.92483 1.20957 0.97574 0.95711 0.98629 1.21867 0.93514 0.93933 0.96802 1.18254 0.95710 0.89188 0.82422 0.93241 1.59203 1.10626 1.22984 1.40584 1.20759 0.98307 1.21631 1.16518 0.92831 1.24938 0.95054 0.96103 0.96119 1.70089 1.20396 1.36353 1.21138 0.86796 0.82296 0.81144 0.78443 1.20292 1.21269 1.20345 1.21030 1.01281 0.99856 0.90832 1.20852 1.00503 0.96518 0.85635 1.98316 1.92840 1.91164 1.22194 0.95265 0.91255 0.91167 0.91280 0.91258 0.95342 0.86529 0.85866 0.89054 0.86976 0.93281 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.34 60.06 0.56 0.91 16 2 N -0.50 -6.84 4.39 -186.82 -0.82 -7.66 16 3 C 0.03 0.35 9.38 60.06 0.56 0.91 16 4 C 0.06 0.96 4.73 -83.73 -0.40 0.57 16 5 C -0.14 -2.18 8.57 -39.39 -0.34 -2.52 16 6 C -0.11 -1.96 9.28 -39.61 -0.37 -2.33 16 7 C -0.06 -1.17 4.89 -104.59 -0.51 -1.68 16 8 C 0.25 6.01 2.85 -70.01 -0.20 5.81 16 9 H 0.05 1.29 8.00 -51.93 -0.42 0.88 16 10 N -0.81 -18.08 8.36 -6.65 -0.06 -18.14 16 11 C -0.53 -14.20 8.70 -34.44 -0.30 -14.49 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.09 2.32 5.39 -17.82 -0.10 2.22 16 14 N -0.85 -24.05 12.77 55.43 0.71 -23.34 16 15 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.11 -2.08 9.44 -39.58 -0.37 -2.46 16 20 C -0.01 -0.13 6.34 -39.31 -0.25 -0.38 16 21 Cl -0.07 -1.17 28.44 -51.86 -1.47 -2.64 16 22 H 0.03 0.33 7.12 -51.93 -0.37 -0.04 16 23 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.03 0.31 7.35 -51.93 -0.38 -0.08 16 28 H 0.12 1.59 7.02 -52.49 -0.37 1.22 16 29 H 0.12 2.14 6.67 -52.48 -0.35 1.79 16 30 H 0.30 5.98 9.06 -39.29 -0.36 5.62 16 31 H 0.32 6.71 7.34 -39.29 -0.29 6.42 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.13 2.44 8.03 -52.48 -0.42 2.02 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -28.47 292.89 -8.13 -36.60 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.18 Total: 8.22 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.71 Total: -13.43 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.17 Total: -49.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.47 Total: -2.64 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.47 -8.13 -36.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.678 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds