Wall clock time and date at job start Mon Mar 30 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35984 * 116.99978 * 2 1 4 4 C 1.38725 * 119.98984 * 359.97438 * 3 2 1 5 5 C 1.38274 * 119.97404 * 179.97438 * 4 3 2 6 6 F 1.35102 * 120.01825 * 180.02562 * 5 4 3 7 7 C 1.38922 * 119.96105 * 0.02562 * 5 4 3 8 8 O 1.36035 * 120.00504 * 179.97438 * 7 5 4 9 9 C 1.38587 * 119.98728 * 0.02562 * 7 5 4 10 10 C 1.38211 * 120.01923 * 359.72065 * 9 7 5 11 11 C 1.50701 * 119.97911 * 180.27739 * 10 9 7 12 12 C 1.53009 * 109.46817 * 244.81420 * 11 10 9 13 13 C 1.52996 * 109.47356 * 4.80936 * 11 10 9 14 14 C 1.50696 * 109.47425 * 124.81505 * 11 10 9 15 15 H 1.07998 * 119.99957 * 359.83628 * 14 11 10 16 16 C 1.37879 * 120.00038 * 179.84265 * 14 11 10 17 17 N 1.31507 * 120.00258 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99809 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47064 * 89.99824 * 18 16 14 20 20 H 1.48501 * 109.46946 * 209.99628 * 18 16 14 21 21 H 1.48502 * 109.46975 * 329.99913 * 18 16 14 22 22 H 1.09000 * 109.47052 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47005 * 59.99757 * 1 2 3 24 24 H 1.08995 * 109.46973 * 300.00139 * 1 2 3 25 25 H 1.07993 * 120.01421 * 359.97438 * 4 3 2 26 26 H 0.96698 * 114.00544 * 90.00824 * 8 7 5 27 27 H 1.07992 * 119.98872 * 179.97438 * 9 7 5 28 28 H 1.08993 * 109.47593 * 59.99739 * 12 11 10 29 29 H 1.09002 * 109.46820 * 179.97438 * 12 11 10 30 30 H 1.09002 * 109.47131 * 299.99423 * 12 11 10 31 31 H 1.08998 * 109.46958 * 60.00142 * 13 11 10 32 32 H 1.08995 * 109.47430 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47000 * 300.00676 * 13 11 10 34 34 H 0.96995 * 120.00517 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2906 2.3749 -0.0005 5 6 1.9187 3.6068 0.0000 6 9 1.1836 4.7403 0.0000 7 6 3.3061 3.6782 0.0005 8 8 3.9250 4.8896 0.0005 9 6 4.0595 2.5150 0.0000 10 6 3.4311 1.2841 0.0048 11 6 4.2512 0.0198 0.0105 12 6 4.0145 -0.7475 -1.2919 13 6 5.7346 0.3747 0.1308 14 6 3.8435 -0.8383 1.1803 15 1 3.0699 -0.5006 1.8539 16 6 4.4583 -2.0544 1.3906 17 7 5.4001 -2.4657 0.5701 18 14 3.9533 -3.1177 2.8411 19 1 2.8527 -4.0257 2.4298 20 1 5.1163 -3.9227 3.2933 21 1 3.4894 -2.2498 3.9533 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8899 25 1 0.2122 2.3185 -0.0014 26 1 4.1037 5.2401 0.8839 27 1 5.1380 2.5705 0.0000 28 1 4.3094 -0.1270 -2.1380 29 1 4.6081 -1.6617 -1.2880 30 1 2.9577 -1.0005 -1.3777 31 1 5.9033 0.9214 1.0586 32 1 6.3279 -0.5396 0.1345 33 1 6.0295 0.9954 -0.7154 34 1 5.8323 -3.3214 0.7179 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260348306.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:56 Heat of formation + Delta-G solvation = -118.127245 kcal Electronic energy + Delta-G solvation = -19540.354587 eV Core-core repulsion = 16352.887178 eV Total energy + Delta-G solvation = -3187.467410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.89760 -41.33348 -39.21062 -37.84294 -36.12475 -33.38032 -30.69839 -29.93884 -27.96731 -27.34969 -27.08981 -24.07072 -23.14725 -21.02119 -19.41685 -19.03452 -18.25895 -17.60886 -17.02131 -16.89415 -16.34378 -16.20829 -15.78681 -15.35526 -15.16760 -14.81366 -14.50004 -13.81842 -13.73489 -13.17515 -13.11902 -12.93775 -12.72085 -12.49439 -12.39868 -12.33770 -12.04193 -11.77960 -11.65099 -11.38103 -11.04611 -10.72968 -10.28751 -9.75185 -8.82162 -7.90760 -6.02460 0.18880 0.26431 1.45013 1.47780 1.55214 2.47428 2.52184 2.63072 3.11012 3.31258 3.36533 3.80698 4.00814 4.25461 4.38688 4.45524 4.63898 4.75466 4.87302 4.90868 4.91624 5.02792 5.15547 5.17082 5.31500 5.38356 5.52586 5.70265 5.75961 5.81462 6.21153 6.25669 6.52985 6.62407 6.81533 6.98262 7.61481 9.08698 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.024394 B = 0.007927 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.535957 B = 3531.279515 C = 4081.712453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.301 6.301 3 C 0.148 3.852 4 C -0.232 4.232 5 C 0.081 3.919 6 F -0.138 7.138 7 C 0.035 3.965 8 O -0.495 6.495 9 C -0.097 4.097 10 C -0.082 4.082 11 C 0.099 3.901 12 C -0.117 4.117 13 C -0.127 4.127 14 C -0.483 4.483 15 H 0.044 0.956 16 C 0.021 3.979 17 N -0.909 5.909 18 Si 0.940 3.060 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.109 0.891 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.162 0.838 26 H 0.404 0.596 27 H 0.150 0.850 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 8.484 -0.225 11.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.213 6.213 3 C 0.101 3.899 4 C -0.251 4.251 5 C 0.061 3.939 6 F -0.117 7.117 7 C -0.011 4.011 8 O -0.307 6.307 9 C -0.115 4.115 10 C -0.083 4.083 11 C 0.099 3.901 12 C -0.175 4.175 13 C -0.184 4.184 14 C -0.521 4.521 15 H 0.062 0.938 16 C -0.176 4.176 17 N -0.549 5.549 18 Si 0.768 3.232 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.128 0.872 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.180 0.820 26 H 0.262 0.738 27 H 0.167 0.833 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.990 8.117 -0.845 10.745 hybrid contribution -0.455 -0.383 1.256 1.390 sum -7.444 7.734 0.411 10.742 Atomic orbital electron populations 1.23361 0.77974 1.05108 1.02014 1.86492 1.21978 1.25350 1.87459 1.18710 0.91667 0.84381 0.95112 1.21150 1.01810 0.89976 1.12201 1.17702 0.88482 0.82019 1.05651 1.91440 1.77011 1.49062 1.94184 1.18210 0.88308 0.86244 1.08325 1.84829 1.79279 1.31399 1.35179 1.21261 1.01315 0.89563 0.99400 1.20007 0.91651 0.96595 1.00046 1.17089 0.90931 0.87825 0.94252 1.21652 0.99927 1.00764 0.95176 1.21794 0.98678 1.00461 0.97502 1.21072 1.18702 1.02473 1.09876 0.93791 1.25428 0.95370 0.98609 0.98236 1.69922 1.26118 1.20930 1.37936 0.85834 0.77489 0.79137 0.80741 1.20732 1.21412 1.20049 0.87225 0.91442 0.91832 0.82024 0.73781 0.83289 0.96548 0.91900 0.94747 0.95043 0.91896 0.95055 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.81 113.37 1.11 1.37 16 2 O -0.30 -11.51 7.10 -93.37 -0.66 -12.17 16 3 C 0.15 5.64 6.12 22.49 0.14 5.78 16 4 C -0.23 -7.46 9.01 22.39 0.20 -7.25 16 5 C 0.08 2.66 7.31 22.44 0.16 2.82 16 6 F -0.14 -4.31 17.11 44.97 0.77 -3.54 16 7 C 0.03 1.15 6.71 22.52 0.15 1.31 16 8 O -0.50 -14.08 13.37 -93.95 -1.26 -15.33 16 9 C -0.10 -3.56 8.92 22.35 0.20 -3.36 16 10 C -0.08 -3.41 4.73 -19.77 -0.09 -3.51 16 11 C 0.10 4.69 0.48 -53.67 -0.03 4.67 16 12 C -0.12 -5.62 8.08 71.99 0.58 -5.04 16 13 C -0.13 -5.80 6.92 71.98 0.50 -5.30 16 14 C -0.48 -25.15 6.78 25.60 0.17 -24.97 16 15 H 0.04 2.35 7.20 -2.91 -0.02 2.33 16 16 C 0.02 1.13 5.15 84.66 0.44 1.57 16 17 N -0.91 -49.43 9.35 21.45 0.20 -49.23 16 18 Si 0.94 42.76 29.54 68.60 2.03 44.79 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 24 H 0.06 1.44 7.66 -2.39 -0.02 1.42 16 25 H 0.16 4.17 6.29 -2.91 -0.02 4.16 16 26 H 0.40 7.41 9.06 -74.06 -0.67 6.74 16 27 H 0.15 5.21 5.90 -2.91 -0.02 5.19 16 28 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 3.30 6.06 -2.39 -0.01 3.28 16 30 H 0.03 1.62 6.51 -2.39 -0.02 1.60 16 31 H 0.03 1.36 7.74 -2.39 -0.02 1.35 16 32 H 0.06 3.20 6.08 -2.39 -0.01 3.19 16 33 H 0.03 1.27 7.29 -2.39 -0.02 1.25 16 34 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -60.53 279.85 5.08 -55.45 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.47 Total: 11.96 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 3.54 Total: -31.91 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.20 Total: -49.23 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.92 Total: -27.51 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.77 Total: -3.54 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -60.53 5.08 -55.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348306.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.679 kcal (2) G-P(sol) polarization free energy of solvation -60.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds