Wall clock time and date at job start Mon Mar 30 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 116.99791 * 2 1 4 4 C 1.38631 * 120.05821 * 264.80302 * 3 2 1 5 5 C 1.50699 * 119.98262 * 0.04953 * 4 3 2 6 6 C 1.38224 * 120.03373 * 180.28096 * 4 3 2 7 7 C 1.50705 * 119.91478 * 179.72782 * 6 4 3 8 8 C 1.50699 * 109.46962 * 85.02286 * 7 6 4 9 9 H 1.07994 * 120.00628 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99533 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00029 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00031 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46722 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46890 * 119.99904 * 12 10 8 15 15 H 1.48492 * 109.47064 * 240.00151 * 12 10 8 16 16 C 1.38267 * 120.16110 * 359.74423 * 6 4 3 17 17 C 1.38407 * 120.11918 * 0.02562 * 16 6 4 18 18 F 1.35101 * 120.01731 * 180.02562 * 17 16 6 19 19 C 1.38757 * 119.96325 * 359.97438 * 17 16 6 20 20 O 1.36054 * 120.08140 * 179.97438 * 19 17 16 21 21 C 1.42904 * 116.99936 * 273.80497 * 20 19 17 22 22 H 1.08995 * 109.47492 * 294.74991 * 1 2 3 23 23 H 1.09003 * 109.46653 * 54.74724 * 1 2 3 24 24 H 1.08996 * 109.47173 * 174.74467 * 1 2 3 25 25 H 1.09000 * 109.46791 * 270.22885 * 5 4 3 26 26 H 1.08997 * 109.46893 * 30.22966 * 5 4 3 27 27 H 1.09006 * 109.46756 * 150.22839 * 5 4 3 28 28 H 1.09000 * 109.46316 * 205.01748 * 7 6 4 29 29 H 1.09002 * 109.47104 * 325.01721 * 7 6 4 30 30 H 0.97001 * 120.00053 * 179.97438 * 11 10 8 31 31 H 1.07993 * 119.93710 * 180.02562 * 16 6 4 32 32 H 1.09001 * 109.46978 * 295.26104 * 21 20 19 33 33 H 1.08998 * 109.47369 * 55.25453 * 21 20 19 34 34 H 1.08997 * 109.47379 * 175.26224 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.4585 1.7811 -1.1949 5 6 2.2212 1.0574 -2.4953 6 6 3.0911 3.0101 -1.1938 7 6 3.5434 3.6237 -2.4938 8 6 2.3974 4.3758 -3.1199 9 1 1.4374 4.4061 -2.6261 10 6 2.5745 5.0253 -4.3231 11 7 3.7437 4.9889 -4.9242 12 14 1.1537 5.9570 -5.0996 13 1 -0.0450 5.8460 -4.2302 14 1 1.5238 7.3872 -5.2515 15 1 0.8532 5.3791 -6.4340 16 6 3.3102 3.6775 -0.0029 17 6 2.8973 3.1173 1.1934 18 9 3.1119 3.7715 2.3558 19 6 2.2617 1.8838 1.1982 20 8 1.8552 1.3307 2.3728 21 6 2.8163 0.5547 3.0914 22 1 -0.3634 0.4302 0.9332 23 1 -0.3633 0.5932 -0.8392 24 1 -0.3633 -1.0233 -0.0941 25 1 3.0738 0.4145 -2.7141 26 1 1.3197 0.4501 -2.4139 27 1 2.0985 1.7841 -3.2984 28 1 4.3681 4.3106 -2.3037 29 1 3.8748 2.8367 -3.1712 30 1 3.8682 5.4455 -5.7709 31 1 3.8045 4.6377 -0.0063 32 1 3.0822 -0.3262 2.5070 33 1 3.7083 1.1552 3.2695 34 1 2.3916 0.2430 4.0456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260362201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:20 Heat of formation + Delta-G solvation = -107.617499 kcal Electronic energy + Delta-G solvation = -19087.708891 eV Core-core repulsion = 15900.697218 eV Total energy + Delta-G solvation = -3187.011673 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.52436 -40.08346 -37.63605 -37.09776 -33.28285 -31.67076 -30.54525 -27.85631 -27.34902 -25.96845 -25.66376 -23.25746 -21.58062 -20.43408 -17.68962 -17.19316 -16.81362 -16.42029 -15.94047 -15.46924 -14.99432 -14.68547 -14.60192 -14.45118 -14.05617 -13.45278 -12.96576 -12.93742 -12.31761 -12.00295 -11.89790 -11.75412 -11.46737 -11.17403 -11.07116 -10.90477 -10.63288 -10.53426 -10.33133 -9.72192 -9.50606 -9.39361 -8.52409 -8.14836 -7.82809 -6.14628 -4.19270 1.39015 1.48622 3.23864 3.32223 3.36205 3.53816 3.84619 4.22940 4.38146 4.68046 5.20398 5.26451 5.36542 5.39291 5.47237 5.48222 5.50978 5.59056 5.65173 5.74686 5.85306 6.00249 6.24402 6.34399 6.47300 6.68505 6.73419 6.99040 7.07521 7.37432 7.41992 7.61809 7.80906 7.89303 8.16952 8.85833 9.45397 10.95049 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.006483 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.230502 B = 4317.629494 C = 4845.117218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.329 6.329 3 C 0.100 3.900 4 C -0.097 4.097 5 C -0.109 4.109 6 C 0.001 3.999 7 C 0.048 3.952 8 C -0.514 4.514 9 H 0.059 0.941 10 C 0.062 3.938 11 N -0.890 5.890 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C -0.149 4.149 17 C 0.082 3.918 18 F -0.139 7.139 19 C 0.012 3.988 20 O -0.325 6.325 21 C 0.036 3.964 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.033 0.967 29 H 0.040 0.960 30 H 0.263 0.737 31 H 0.140 0.860 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -8.445 9.858 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.056 3.944 4 C -0.098 4.098 5 C -0.165 4.165 6 C 0.001 3.999 7 C 0.011 3.989 8 C -0.552 4.552 9 H 0.077 0.923 10 C -0.140 4.140 11 N -0.529 5.529 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.168 4.168 17 C 0.062 3.938 18 F -0.118 7.118 19 C -0.033 4.033 20 O -0.242 6.242 21 C -0.058 4.058 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.892 -8.531 9.834 13.336 hybrid contribution -0.605 0.847 -0.129 1.049 sum -3.497 -7.684 9.705 12.863 Atomic orbital electron populations 1.22957 0.79026 1.02618 1.01051 1.85947 1.19872 1.24469 1.94269 1.18556 0.98783 0.86234 0.90834 1.20078 1.00197 0.95001 0.94490 1.20730 1.00919 1.00194 0.94687 1.20438 0.91469 0.91177 0.96839 1.18444 0.97167 0.96112 0.87150 1.21001 0.96795 1.32051 1.05334 0.92286 1.24986 0.95838 0.96275 0.96949 1.69956 1.22556 1.43237 1.17145 0.86487 0.82442 0.79663 0.79215 1.19619 1.20867 1.20837 1.21114 1.03743 1.01854 0.90079 1.17920 1.01671 0.92092 0.82079 1.91440 1.93066 1.80438 1.46863 1.18802 1.05561 0.92707 0.86204 1.86036 1.38079 1.67869 1.32218 1.22977 0.92468 0.94451 0.95951 0.93315 0.93351 0.89249 0.91606 0.92528 0.88570 0.94865 0.94164 0.92722 0.84262 0.93337 0.93865 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.83 101.05 1.09 1.60 16 2 O -0.33 -5.47 9.32 -34.27 -0.32 -5.79 16 3 C 0.10 1.84 5.71 -39.13 -0.22 1.61 16 4 C -0.10 -1.88 5.89 -104.48 -0.62 -2.50 16 5 C -0.11 -1.95 8.98 36.01 0.32 -1.63 16 6 C 0.00 0.02 5.07 -104.61 -0.53 -0.51 16 7 C 0.05 1.15 4.42 -29.03 -0.13 1.02 16 8 C -0.51 -13.48 8.31 -34.44 -0.29 -13.77 16 9 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 11 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 12 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C -0.15 -2.92 9.65 -39.51 -0.38 -3.30 16 17 C 0.08 1.55 7.31 -39.33 -0.29 1.26 16 18 F -0.14 -2.55 17.11 2.25 0.04 -2.51 16 19 C 0.01 0.22 5.74 -39.09 -0.22 0.00 16 20 O -0.33 -5.53 10.07 -34.46 -0.35 -5.88 16 21 C 0.04 0.47 11.13 101.05 1.13 1.59 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.64 7.86 -51.93 -0.41 0.23 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 0.90 6.98 -51.93 -0.36 0.54 16 27 H 0.10 1.93 6.15 -51.93 -0.32 1.61 16 28 H 0.03 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.04 1.00 6.98 -51.93 -0.36 0.63 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -28.73 298.12 -5.02 -33.75 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.37 Total: -2.39 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.23 Total: -13.06 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.74 Total: -24.28 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.67 Total: -11.66 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.73 -5.02 -33.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.864 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds