Wall clock time and date at job start Mon Mar 30 2020 06:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 116.99791 * 2 1 4 4 C 1.38631 * 120.05821 * 264.80302 * 3 2 1 5 5 C 1.50699 * 119.98262 * 0.04953 * 4 3 2 6 6 C 1.38224 * 120.03373 * 180.28096 * 4 3 2 7 7 C 1.50705 * 119.91478 * 179.72782 * 6 4 3 8 8 C 1.50699 * 109.46962 * 85.02286 * 7 6 4 9 9 H 1.07994 * 120.00628 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99533 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00029 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00031 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46722 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46890 * 119.99904 * 12 10 8 15 15 H 1.48492 * 109.47064 * 240.00151 * 12 10 8 16 16 C 1.38267 * 120.16110 * 359.74423 * 6 4 3 17 17 C 1.38407 * 120.11918 * 0.02562 * 16 6 4 18 18 F 1.35101 * 120.01731 * 180.02562 * 17 16 6 19 19 C 1.38757 * 119.96325 * 359.97438 * 17 16 6 20 20 O 1.36054 * 120.08140 * 179.97438 * 19 17 16 21 21 C 1.42904 * 116.99936 * 273.80497 * 20 19 17 22 22 H 1.08995 * 109.47492 * 294.74991 * 1 2 3 23 23 H 1.09003 * 109.46653 * 54.74724 * 1 2 3 24 24 H 1.08996 * 109.47173 * 174.74467 * 1 2 3 25 25 H 1.09000 * 109.46791 * 270.22885 * 5 4 3 26 26 H 1.08997 * 109.46893 * 30.22966 * 5 4 3 27 27 H 1.09006 * 109.46756 * 150.22839 * 5 4 3 28 28 H 1.09000 * 109.46316 * 205.01748 * 7 6 4 29 29 H 1.09002 * 109.47104 * 325.01721 * 7 6 4 30 30 H 0.97001 * 120.00053 * 179.97438 * 11 10 8 31 31 H 1.07993 * 119.93710 * 180.02562 * 16 6 4 32 32 H 1.09001 * 109.46978 * 295.26104 * 21 20 19 33 33 H 1.08998 * 109.47369 * 55.25453 * 21 20 19 34 34 H 1.08997 * 109.47379 * 175.26224 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.4585 1.7811 -1.1949 5 6 2.2212 1.0574 -2.4953 6 6 3.0911 3.0101 -1.1938 7 6 3.5434 3.6237 -2.4938 8 6 2.3974 4.3758 -3.1199 9 1 1.4374 4.4061 -2.6261 10 6 2.5745 5.0253 -4.3231 11 7 3.7437 4.9889 -4.9242 12 14 1.1537 5.9570 -5.0996 13 1 -0.0450 5.8460 -4.2302 14 1 1.5238 7.3872 -5.2515 15 1 0.8532 5.3791 -6.4340 16 6 3.3102 3.6775 -0.0029 17 6 2.8973 3.1173 1.1934 18 9 3.1119 3.7715 2.3558 19 6 2.2617 1.8838 1.1982 20 8 1.8552 1.3307 2.3728 21 6 2.8163 0.5547 3.0914 22 1 -0.3634 0.4302 0.9332 23 1 -0.3633 0.5932 -0.8392 24 1 -0.3633 -1.0233 -0.0941 25 1 3.0738 0.4145 -2.7141 26 1 1.3197 0.4501 -2.4139 27 1 2.0985 1.7841 -3.2984 28 1 4.3681 4.3106 -2.3037 29 1 3.8748 2.8367 -3.1712 30 1 3.8682 5.4455 -5.7709 31 1 3.8045 4.6377 -0.0063 32 1 3.0822 -0.3262 2.5070 33 1 3.7083 1.1552 3.2695 34 1 2.3916 0.2430 4.0456 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:20 Heat of formation + Delta-G solvation = -123.211193 kcal Electronic energy + Delta-G solvation = -19088.385084 eV Core-core repulsion = 15900.697218 eV Total energy + Delta-G solvation = -3187.687866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.99138 -41.49199 -38.95638 -38.51591 -35.20673 -33.23697 -32.15000 -29.42310 -28.51360 -27.37712 -27.06839 -25.05913 -23.06765 -21.97607 -19.07802 -18.63330 -18.50357 -18.15396 -17.29384 -16.90666 -16.49176 -16.29575 -15.94636 -15.71361 -15.33837 -14.89752 -14.61761 -14.50718 -13.97940 -13.55132 -13.40264 -13.00729 -12.89648 -12.74733 -12.65415 -12.46904 -12.34841 -12.18086 -11.76358 -11.46513 -11.32458 -10.71632 -10.58172 -9.62571 -9.37626 -8.19219 -6.30647 -0.06651 -0.01236 1.41272 1.43703 1.55097 2.10352 2.43658 2.50863 2.85150 3.12773 3.24454 3.86100 3.87968 4.13789 4.26656 4.37863 4.44193 4.45978 4.51458 4.55629 4.69097 4.77924 4.83816 4.89009 4.95101 5.04994 5.17764 5.34803 5.44320 5.59034 5.75307 5.80093 6.11512 6.15763 6.54829 6.80517 7.37567 8.90503 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.006483 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.230502 B = 4317.629494 C = 4845.117218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.333 6.333 3 C 0.105 3.895 4 C -0.102 4.102 5 C -0.103 4.103 6 C -0.020 4.020 7 C 0.059 3.941 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.013 3.987 11 N -0.925 5.925 12 Si 0.958 3.042 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.276 1.276 16 C -0.152 4.152 17 C 0.078 3.922 18 F -0.136 7.136 19 C 0.021 3.979 20 O -0.336 6.336 21 C 0.030 3.970 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.011 0.989 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.141 0.859 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -9.515 10.871 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.250 6.250 3 C 0.061 3.939 4 C -0.103 4.103 5 C -0.159 4.159 6 C -0.020 4.020 7 C 0.022 3.978 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.186 4.186 11 N -0.565 5.565 12 Si 0.783 3.217 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.201 1.201 16 C -0.171 4.171 17 C 0.058 3.942 18 F -0.115 7.115 19 C -0.024 4.024 20 O -0.253 6.253 21 C -0.063 4.063 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.142 0.858 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.315 -9.611 10.863 15.133 hybrid contribution -0.182 1.074 -0.320 1.135 sum -4.497 -8.537 10.543 14.292 Atomic orbital electron populations 1.23224 0.76983 1.04932 1.01025 1.85937 1.21682 1.23225 1.94202 1.18476 0.98569 0.86642 0.90258 1.20183 0.99878 0.94582 0.95611 1.20672 1.02371 0.99745 0.93153 1.20127 0.93681 0.92452 0.95779 1.18160 0.95936 0.95095 0.88566 1.21244 0.97121 1.32047 1.05515 0.92771 1.25767 0.98152 0.97168 0.97506 1.70060 1.24425 1.44325 1.17669 0.85505 0.79506 0.78285 0.78440 1.19111 1.20583 1.20129 1.21087 1.03852 1.01958 0.90161 1.17863 1.02046 0.92451 0.81838 1.91443 1.93082 1.80457 1.46498 1.18877 1.04115 0.92395 0.87024 1.86003 1.39406 1.68288 1.31639 1.23251 0.92209 0.93996 0.96879 0.93315 0.93468 0.85784 0.90547 0.90447 0.91162 0.97089 0.95623 0.92540 0.84107 0.92861 0.93763 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.83 113.37 1.23 1.98 16 2 O -0.33 -10.25 9.32 -79.57 -0.74 -10.99 16 3 C 0.11 3.69 5.71 22.56 0.13 3.82 16 4 C -0.10 -3.91 5.89 -19.77 -0.12 -4.02 16 5 C -0.10 -3.64 8.98 71.24 0.64 -3.00 16 6 C -0.02 -0.85 5.07 -19.86 -0.10 -0.95 16 7 C 0.06 2.95 4.42 29.10 0.13 3.08 16 8 C -0.52 -27.88 8.31 25.60 0.21 -27.67 16 9 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 10 C 0.01 0.70 5.46 84.65 0.46 1.16 16 11 N -0.93 -52.93 13.29 21.45 0.28 -52.65 16 12 Si 0.96 42.52 29.54 68.60 2.03 44.54 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 16 C -0.15 -5.99 9.65 22.32 0.22 -5.77 16 17 C 0.08 2.87 7.31 22.43 0.16 3.03 16 18 F -0.14 -4.82 17.11 44.97 0.77 -4.05 16 19 C 0.02 0.74 5.74 22.59 0.13 0.87 16 20 O -0.34 -10.62 10.07 -80.25 -0.81 -11.42 16 21 C 0.03 0.70 11.13 113.37 1.26 1.96 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.13 7.86 -2.39 -0.02 1.11 16 24 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.08 2.35 6.98 -2.39 -0.02 2.33 16 27 H 0.07 2.85 6.15 -2.38 -0.01 2.84 16 28 H 0.01 0.58 8.05 -2.39 -0.02 0.56 16 29 H 0.03 1.32 6.98 -2.39 -0.02 1.31 16 30 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.14 5.36 8.06 -2.91 -0.02 5.34 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -60.86 298.12 6.99 -53.87 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.10 Total: 6.19 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 4.35 Total: -25.51 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.28 Total: -52.65 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.55 Total: -22.41 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.77 Total: -4.05 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -60.86 6.99 -53.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.336 kcal (2) G-P(sol) polarization free energy of solvation -60.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds