Wall clock time and date at job start Mon Mar 30 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00201 * 2 1 4 4 C 1.50697 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.04172 * 270.32157 * 4 3 2 6 6 F 1.35101 * 119.99809 * 359.97438 * 5 4 3 7 7 C 1.38481 * 120.00217 * 180.25158 * 5 4 3 8 8 C 1.50701 * 119.95421 * 179.72447 * 7 5 4 9 9 C 1.50703 * 109.47064 * 84.72627 * 8 7 5 10 10 H 1.07996 * 119.99751 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00001 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00094 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46999 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46942 * 119.99666 * 13 11 9 16 16 H 1.48504 * 109.46979 * 239.99580 * 13 11 9 17 17 C 1.38248 * 120.08780 * 359.44996 * 7 5 4 18 18 C 1.38135 * 120.07936 * 0.25482 * 17 7 5 19 19 C 1.38675 * 120.03903 * 90.00001 * 4 3 2 20 20 O 1.35902 * 120.04170 * 0.02562 * 19 4 3 21 21 C 1.42896 * 116.99717 * 180.02562 * 20 19 4 22 22 H 1.09005 * 109.47422 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47232 * 299.99936 * 1 2 3 24 24 H 1.09001 * 109.47316 * 60.00346 * 1 2 3 25 25 H 1.08997 * 109.46944 * 59.99618 * 3 2 1 26 26 H 1.09004 * 109.47340 * 300.00184 * 3 2 1 27 27 H 1.09002 * 109.47060 * 204.72590 * 8 7 5 28 28 H 1.09001 * 109.47380 * 324.72678 * 8 7 5 29 29 H 0.97000 * 120.00333 * 179.97438 * 12 11 9 30 30 H 1.07998 * 119.96164 * 180.27306 * 17 7 5 31 31 H 1.08003 * 120.00347 * 180.02562 * 18 17 7 32 32 H 1.09001 * 109.46735 * 179.97438 * 21 20 19 33 33 H 1.08993 * 109.47271 * 299.99795 * 21 20 19 34 34 H 1.08999 * 109.47076 * 59.99923 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2021 1.1252 1.1988 6 9 3.5285 1.1727 2.3690 7 6 5.5830 1.0211 1.1985 8 6 6.3334 0.9608 2.5040 9 6 6.3643 -0.4618 3.0004 10 1 5.8879 -1.2438 2.4280 11 6 6.9999 -0.7646 4.1858 12 7 7.5797 0.1879 4.8832 13 14 7.0389 -2.5281 4.8007 14 1 6.3202 -3.4033 3.8401 15 1 8.4486 -2.9788 4.9226 16 1 6.3784 -2.6040 6.1286 17 6 6.2736 0.9667 0.0021 18 6 5.5883 1.0214 -1.1960 19 6 4.2050 1.1314 -1.1996 20 8 3.5298 1.1852 -2.3777 21 6 4.3078 1.1228 -3.5747 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6885 1.8463 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 7.3530 1.3155 2.3537 28 1 5.8340 1.5915 3.2396 29 1 8.0266 -0.0251 5.7173 30 1 7.3502 0.8811 0.0043 31 1 6.1291 0.9784 -2.1299 32 1 3.6474 1.1750 -4.4403 33 1 5.0056 1.9598 -3.5986 34 1 4.8637 0.1855 -3.5982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260368203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:19 Heat of formation + Delta-G solvation = -131.547370 kcal Electronic energy + Delta-G solvation = -18798.348921 eV Core-core repulsion = 15610.299571 eV Total energy + Delta-G solvation = -3188.049350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.84432 -41.19215 -38.77445 -38.37773 -35.36237 -33.39602 -32.02430 -29.07872 -28.46726 -27.64961 -26.31023 -25.09621 -22.81153 -21.87420 -19.31176 -18.57671 -18.23133 -17.55133 -17.02111 -16.84867 -16.57661 -16.38857 -16.23984 -16.22991 -15.48144 -15.12223 -14.44583 -14.01100 -13.89908 -13.64064 -13.39408 -13.15530 -13.00572 -12.92006 -12.56580 -12.47744 -12.34335 -11.94907 -11.83376 -11.51448 -11.32991 -10.66299 -10.62380 -9.78754 -9.04252 -8.20919 -6.34756 0.09679 0.36208 1.37137 1.38576 1.52030 2.22897 2.36450 2.52861 3.08510 3.11450 3.52380 3.73324 3.79817 4.05110 4.16468 4.32195 4.44283 4.48459 4.49280 4.51429 4.55966 4.60976 4.79972 4.82172 4.89344 5.18505 5.21781 5.29181 5.30169 5.70996 5.72751 5.77205 6.14297 6.19472 6.39713 6.76133 7.33422 8.87806 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.006441 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.921354 B = 4346.209010 C = 5014.618278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.122 3.878 4 C -0.179 4.179 5 C 0.126 3.874 6 F -0.145 7.145 7 C -0.140 4.140 8 C 0.064 3.936 9 C -0.528 4.528 10 H 0.049 0.951 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.963 3.037 14 H -0.269 1.269 15 H -0.269 1.269 16 H -0.277 1.277 17 C -0.052 4.052 18 C -0.204 4.204 19 C 0.156 3.844 20 O -0.321 6.321 21 C 0.015 3.985 22 H 0.096 0.904 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.019 0.981 28 H -0.003 1.003 29 H 0.266 0.734 30 H 0.145 0.855 31 H 0.172 0.828 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 2.506 -17.009 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.046 3.954 4 C -0.181 4.181 5 C 0.107 3.893 6 F -0.123 7.123 7 C -0.141 4.141 8 C 0.028 3.972 9 C -0.566 4.566 10 H 0.067 0.933 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.787 3.213 14 H -0.193 1.193 15 H -0.194 1.194 16 H -0.203 1.203 17 C -0.070 4.070 18 C -0.222 4.222 19 C 0.110 3.890 20 O -0.235 6.235 21 C -0.079 4.079 22 H 0.115 0.885 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.037 0.963 28 H 0.016 0.984 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.189 0.811 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.033 2.396 -16.863 19.279 hybrid contribution 0.115 -0.478 1.137 1.239 sum -8.917 1.918 -15.726 18.179 Atomic orbital electron populations 1.22949 0.79216 1.03885 1.01012 1.87952 1.21802 1.28045 1.95566 1.20946 0.87692 0.85199 1.01527 1.18916 0.96110 1.13157 0.89918 1.17330 0.89688 1.01798 0.80477 1.91411 1.80388 1.93607 1.46942 1.20459 0.92180 1.02910 0.98549 1.17937 0.94155 0.96353 0.88795 1.21361 1.34950 0.93617 1.06698 0.93298 1.25883 0.94724 1.01943 0.96592 1.70072 1.36849 1.34291 1.15589 0.85424 0.78330 0.79313 0.78185 1.19283 1.19433 1.20283 1.20946 1.00918 0.95174 0.89991 1.21505 0.92339 1.08405 0.99960 1.18316 0.90358 0.95056 0.85233 1.86029 1.36845 1.87930 1.12673 1.23446 0.98006 1.02605 0.83838 0.88519 0.93553 0.92211 0.92780 0.89894 0.96269 0.98438 0.92468 0.83680 0.81077 0.85780 0.91025 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -14.05 10.69 -148.98 -1.59 -15.64 16 3 C 0.12 3.97 5.66 71.23 0.40 4.37 16 4 C -0.18 -6.74 5.53 -19.73 -0.11 -6.85 16 5 C 0.13 5.68 7.18 22.36 0.16 5.84 16 6 F -0.14 -7.09 15.78 44.97 0.71 -6.38 16 7 C -0.14 -6.47 5.08 -19.80 -0.10 -6.57 16 8 C 0.06 3.59 4.87 29.10 0.14 3.73 16 9 C -0.53 -31.51 9.09 25.60 0.23 -31.28 16 10 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 11 C 0.01 0.40 5.46 84.65 0.46 0.87 16 12 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 13 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 C -0.05 -1.93 9.67 22.25 0.22 -1.71 16 18 C -0.20 -6.01 9.04 22.37 0.20 -5.81 16 19 C 0.16 4.99 6.66 22.50 0.15 5.14 16 20 O -0.32 -8.31 9.54 -92.45 -0.88 -9.20 16 21 C 0.01 0.23 9.81 113.37 1.11 1.34 16 22 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 1.73 7.65 -2.39 -0.02 1.71 16 26 H 0.08 2.26 7.53 -2.39 -0.02 2.24 16 27 H 0.02 1.08 8.05 -2.39 -0.02 1.06 16 28 H 0.00 -0.16 7.80 -2.39 -0.02 -0.18 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.15 4.88 8.06 -2.91 -0.02 4.85 16 31 H 0.17 3.48 6.30 -2.91 -0.02 3.46 16 32 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 34 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 Total: -1.00 -73.05 298.53 5.76 -67.29 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.10 Total: 2.00 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.12 Total: -29.11 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.28 Total: -56.81 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -2.47 Total: -24.84 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.71 Total: -6.38 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -73.05 5.76 -67.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.262 kcal (2) G-P(sol) polarization free energy of solvation -73.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds