Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99538 * 2 1 4 4 C 1.38623 * 120.06160 * 93.37677 * 3 2 1 5 5 C 1.50704 * 119.98054 * 359.97314 * 4 3 2 6 6 C 1.38217 * 120.03964 * 179.97438 * 4 3 2 7 7 C 1.38269 * 120.15543 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.93501 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47367 * 100.00162 * 8 7 6 10 10 H 1.08003 * 119.99689 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00103 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99959 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00205 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47161 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47282 * 119.99834 * 13 11 9 16 16 H 1.48502 * 109.47277 * 239.99543 * 13 11 9 17 17 C 1.38407 * 120.12244 * 0.24984 * 7 6 4 18 18 F 1.35098 * 120.01877 * 179.72629 * 17 7 6 19 19 C 1.38752 * 119.95966 * 359.47919 * 17 7 6 20 20 O 1.36057 * 120.08020 * 180.22329 * 19 17 7 21 21 C 1.42897 * 116.99683 * 88.73437 * 20 19 17 22 22 H 1.08999 * 109.47216 * 176.00828 * 1 2 3 23 23 H 1.09002 * 109.47168 * 296.00297 * 1 2 3 24 24 H 1.08993 * 109.47506 * 56.00530 * 1 2 3 25 25 H 1.08998 * 109.47029 * 270.02453 * 5 4 3 26 26 H 1.08999 * 109.46747 * 30.02680 * 5 4 3 27 27 H 1.09003 * 109.47225 * 150.02126 * 5 4 3 28 28 H 1.08002 * 119.92177 * 179.97438 * 6 4 3 29 29 H 1.09000 * 109.46786 * 339.99549 * 8 7 6 30 30 H 1.09005 * 109.46654 * 220.00123 * 8 7 6 31 31 H 0.97001 * 120.00298 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.46888 * 184.17932 * 21 20 19 33 33 H 1.09004 * 109.47211 * 304.17669 * 21 20 19 34 34 H 1.08992 * 109.47687 * 64.17633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.4245 1.7985 1.1977 5 6 2.1509 1.0933 2.5011 6 6 3.0523 3.0298 1.1971 7 6 3.3056 3.6798 0.0033 8 6 3.9899 5.0225 0.0085 9 6 5.4503 4.8433 -0.3172 10 1 5.8437 3.8558 -0.5085 11 6 6.2842 5.9399 -0.3711 12 7 5.8051 7.1425 -0.1388 13 14 8.0946 5.7178 -0.7742 14 1 8.3801 4.2769 -0.9917 15 1 8.4248 6.4796 -2.0055 16 1 8.9184 6.2203 0.3545 17 6 2.9267 3.1022 -1.1961 18 9 3.1702 3.7417 -2.3609 19 6 2.3012 1.8637 -1.2016 20 8 1.9317 1.2916 -2.3795 21 6 2.9001 0.4685 -3.0327 22 1 -0.3633 -1.0252 -0.0715 23 1 -0.3633 0.4506 0.9236 24 1 -0.3634 0.5745 -0.8520 25 1 1.1708 1.3890 2.8754 26 1 2.1688 0.0152 2.3416 27 1 2.9152 1.3656 3.2290 28 1 3.3458 3.4853 2.1314 29 1 3.8906 5.4771 0.9942 30 1 3.5278 5.6687 -0.7379 31 1 6.3918 7.9140 -0.1763 32 1 2.5058 0.1360 -3.9930 33 1 3.8140 1.0404 -3.1935 34 1 3.1192 -0.3988 -2.4100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = -106.577547 kcal Electronic energy + Delta-G solvation = -19097.539606 eV Core-core repulsion = 15910.573029 eV Total energy + Delta-G solvation = -3186.966577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.10566 -40.05325 -37.58403 -37.01233 -33.45863 -31.85605 -30.47285 -27.68726 -27.27590 -26.34436 -25.58263 -23.26591 -21.69165 -20.20893 -17.86343 -17.11652 -16.83398 -16.43950 -15.84583 -15.28761 -14.92712 -14.62257 -14.43816 -14.21533 -14.00063 -13.40234 -13.20906 -12.80012 -12.38893 -12.12146 -11.95938 -11.87616 -11.65319 -11.30440 -11.11074 -10.92521 -10.63176 -10.57927 -10.29110 -9.75386 -9.48016 -9.36464 -8.47278 -8.14174 -7.79762 -6.08885 -4.13021 1.37234 1.51022 3.27691 3.35016 3.39512 3.52909 3.85408 4.23219 4.42342 4.86066 5.15391 5.26687 5.28845 5.33794 5.40226 5.50148 5.52364 5.57464 5.62086 5.69205 5.75056 5.83937 5.91211 6.06328 6.31894 6.51346 6.68664 6.79348 7.08632 7.37822 7.44007 7.58775 7.85409 7.89516 8.21736 8.90265 9.50928 11.01306 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.006573 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.346375 B = 4258.800187 C = 4786.944558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.328 6.328 3 C 0.073 3.927 4 C -0.104 4.104 5 C -0.105 4.105 6 C -0.092 4.092 7 C -0.057 4.057 8 C 0.050 3.950 9 C -0.512 4.512 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.088 3.912 18 F -0.124 7.124 19 C 0.038 3.962 20 O -0.328 6.328 21 C 0.037 3.963 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.844 -12.687 1.413 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.245 6.245 3 C 0.029 3.971 4 C -0.105 4.105 5 C -0.161 4.161 6 C -0.110 4.110 7 C -0.058 4.058 8 C 0.013 3.987 9 C -0.550 4.550 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.068 3.932 18 F -0.102 7.102 19 C -0.007 4.007 20 O -0.244 6.244 21 C -0.057 4.057 22 H 0.106 0.894 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.875 -12.645 1.274 15.501 hybrid contribution 1.143 0.223 -0.516 1.273 sum -7.732 -12.422 0.758 14.652 Atomic orbital electron populations 1.22940 0.79423 1.02587 1.00683 1.85953 1.19635 1.24603 1.94274 1.18318 1.01099 0.87019 0.90684 1.20061 1.00854 0.95119 0.94458 1.20626 1.01698 1.00383 0.93429 1.20839 0.98498 0.93467 0.98211 1.20827 0.94594 1.00160 0.90210 1.18344 0.94811 0.86398 0.99116 1.21001 0.92229 0.93541 1.48271 0.92484 1.24976 0.98968 0.95084 0.95069 1.69957 1.35681 0.98238 1.49203 0.86458 0.84714 0.78362 0.78084 1.19665 1.20824 1.20832 1.17789 1.00954 0.91735 0.82706 1.91484 1.92158 1.80870 1.45673 1.18973 1.03468 0.92164 0.86063 1.85989 1.39940 1.65211 1.33301 1.22982 0.92368 0.93536 0.96827 0.89353 0.93868 0.93277 0.91634 0.91185 0.91232 0.84532 0.94521 0.94572 0.92772 0.89136 0.93403 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.13 101.05 1.12 1.57 16 2 O -0.33 -5.05 9.24 -34.28 -0.32 -5.37 16 3 C 0.07 1.26 5.71 -39.13 -0.22 1.04 16 4 C -0.10 -1.71 5.89 -104.49 -0.62 -2.33 16 5 C -0.10 -1.31 9.79 36.01 0.35 -0.96 16 6 C -0.09 -1.70 9.31 -39.58 -0.37 -2.07 16 7 C -0.06 -1.25 5.08 -104.55 -0.53 -1.78 16 8 C 0.05 1.29 4.83 -29.03 -0.14 1.15 16 9 C -0.51 -14.38 9.09 -34.44 -0.31 -14.70 16 10 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 13 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.09 1.91 7.24 -39.33 -0.28 1.63 16 18 F -0.12 -2.89 16.49 2.25 0.04 -2.85 16 19 C 0.04 0.74 5.74 -39.09 -0.22 0.51 16 20 O -0.33 -5.92 10.07 -34.47 -0.35 -6.26 16 21 C 0.04 0.54 11.13 101.05 1.13 1.67 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16 27 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.14 2.30 8.03 -52.49 -0.42 1.88 16 29 H 0.04 0.95 8.00 -51.93 -0.42 0.54 16 30 H 0.04 1.00 7.93 -51.93 -0.41 0.59 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -31.08 302.97 -5.10 -36.19 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.56 Total: -4.69 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -0.20 Total: -12.65 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.66 Total: -11.63 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.08 -5.10 -36.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.392 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds