Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99538 * 2 1 4 4 C 1.38623 * 120.06160 * 93.37677 * 3 2 1 5 5 C 1.50704 * 119.98054 * 359.97314 * 4 3 2 6 6 C 1.38217 * 120.03964 * 179.97438 * 4 3 2 7 7 C 1.38269 * 120.15543 * 359.97438 * 6 4 3 8 8 C 1.50706 * 119.93501 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47367 * 100.00162 * 8 7 6 10 10 H 1.08003 * 119.99689 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00103 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99959 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00205 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47161 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47282 * 119.99834 * 13 11 9 16 16 H 1.48502 * 109.47277 * 239.99543 * 13 11 9 17 17 C 1.38407 * 120.12244 * 0.24984 * 7 6 4 18 18 F 1.35098 * 120.01877 * 179.72629 * 17 7 6 19 19 C 1.38752 * 119.95966 * 359.47919 * 17 7 6 20 20 O 1.36057 * 120.08020 * 180.22329 * 19 17 7 21 21 C 1.42897 * 116.99683 * 88.73437 * 20 19 17 22 22 H 1.08999 * 109.47216 * 176.00828 * 1 2 3 23 23 H 1.09002 * 109.47168 * 296.00297 * 1 2 3 24 24 H 1.08993 * 109.47506 * 56.00530 * 1 2 3 25 25 H 1.08998 * 109.47029 * 270.02453 * 5 4 3 26 26 H 1.08999 * 109.46747 * 30.02680 * 5 4 3 27 27 H 1.09003 * 109.47225 * 150.02126 * 5 4 3 28 28 H 1.08002 * 119.92177 * 179.97438 * 6 4 3 29 29 H 1.09000 * 109.46786 * 339.99549 * 8 7 6 30 30 H 1.09005 * 109.46654 * 220.00123 * 8 7 6 31 31 H 0.97001 * 120.00298 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.46888 * 184.17932 * 21 20 19 33 33 H 1.09004 * 109.47211 * 304.17669 * 21 20 19 34 34 H 1.08992 * 109.47687 * 64.17633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.4245 1.7985 1.1977 5 6 2.1509 1.0933 2.5011 6 6 3.0523 3.0298 1.1971 7 6 3.3056 3.6798 0.0033 8 6 3.9899 5.0225 0.0085 9 6 5.4503 4.8433 -0.3172 10 1 5.8437 3.8558 -0.5085 11 6 6.2842 5.9399 -0.3711 12 7 5.8051 7.1425 -0.1388 13 14 8.0946 5.7178 -0.7742 14 1 8.3801 4.2769 -0.9917 15 1 8.4248 6.4796 -2.0055 16 1 8.9184 6.2203 0.3545 17 6 2.9267 3.1022 -1.1961 18 9 3.1702 3.7417 -2.3609 19 6 2.3012 1.8637 -1.2016 20 8 1.9317 1.2916 -2.3795 21 6 2.9001 0.4685 -3.0327 22 1 -0.3633 -1.0252 -0.0715 23 1 -0.3633 0.4506 0.9236 24 1 -0.3634 0.5745 -0.8520 25 1 1.1708 1.3890 2.8754 26 1 2.1688 0.0152 2.3416 27 1 2.9152 1.3656 3.2290 28 1 3.3458 3.4853 2.1314 29 1 3.8906 5.4771 0.9942 30 1 3.5278 5.6687 -0.7379 31 1 6.3918 7.9140 -0.1763 32 1 2.5058 0.1360 -3.9930 33 1 3.8140 1.0404 -3.1935 34 1 3.1192 -0.3988 -2.4100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = -124.977885 kcal Electronic energy + Delta-G solvation = -19098.337505 eV Core-core repulsion = 15910.573029 eV Total energy + Delta-G solvation = -3187.764476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.82298 -41.42171 -38.90376 -38.41695 -35.41114 -33.43380 -32.03169 -29.25884 -28.46218 -27.64298 -26.94427 -25.14239 -23.14319 -21.77323 -19.25831 -18.66507 -18.52528 -18.21097 -17.23947 -16.83735 -16.50086 -16.20797 -15.92213 -15.46878 -15.37092 -14.87928 -14.50825 -14.26066 -14.15346 -13.62111 -13.44291 -13.21710 -12.95496 -12.75210 -12.70995 -12.50798 -12.38492 -12.18137 -11.82225 -11.53612 -11.31055 -10.71119 -10.64507 -9.61322 -9.34833 -8.24699 -6.37715 -0.07658 0.03584 1.37064 1.38083 1.51015 2.11351 2.39098 2.53083 2.86179 3.07080 3.40721 3.84431 3.90756 4.13170 4.28411 4.35840 4.39909 4.49746 4.53706 4.56506 4.65743 4.76788 4.82117 4.86100 4.97255 5.12368 5.21181 5.27680 5.37019 5.57376 5.64802 5.67602 6.08676 6.10834 6.56030 6.72269 7.30586 8.85503 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.025887 B = 0.006573 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.346375 B = 4258.800187 C = 4786.944558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.332 6.332 3 C 0.084 3.916 4 C -0.090 4.090 5 C -0.102 4.102 6 C -0.091 4.091 7 C -0.084 4.084 8 C 0.061 3.939 9 C -0.529 4.529 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.964 3.036 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.270 1.270 17 C 0.056 3.944 18 F -0.145 7.145 19 C 0.037 3.963 20 O -0.339 6.339 21 C 0.033 3.967 22 H 0.121 0.879 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.025 0.975 30 H 0.000 1.000 31 H 0.267 0.733 32 H 0.124 0.876 33 H 0.033 0.967 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -15.193 2.468 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.249 6.249 3 C 0.039 3.961 4 C -0.091 4.091 5 C -0.158 4.158 6 C -0.109 4.109 7 C -0.085 4.085 8 C 0.024 3.976 9 C -0.567 4.567 10 H 0.069 0.931 11 C -0.190 4.190 12 N -0.566 5.566 13 Si 0.789 3.211 14 H -0.191 1.191 15 H -0.203 1.203 16 H -0.195 1.195 17 C 0.036 3.964 18 F -0.124 7.124 19 C -0.008 4.008 20 O -0.256 6.256 21 C -0.061 4.061 22 H 0.139 0.861 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.169 0.831 29 H 0.043 0.957 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.051 0.949 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.165 -15.167 2.333 17.874 hybrid contribution 1.096 0.877 -0.846 1.639 sum -8.069 -14.290 1.487 16.478 Atomic orbital electron populations 1.23228 0.77005 1.04795 1.01159 1.85936 1.21725 1.23055 1.94214 1.18409 1.00307 0.87232 0.90136 1.20436 0.98545 0.93975 0.96149 1.20746 1.03467 1.00422 0.91211 1.20979 0.98310 0.94260 0.97336 1.20554 0.96740 0.99187 0.91992 1.18027 0.94265 0.88318 0.97014 1.21283 0.93672 0.93388 1.48354 0.93112 1.25873 1.03733 0.94680 0.94733 1.70068 1.37483 0.99069 1.50017 0.85406 0.79037 0.78493 0.78205 1.19133 1.20344 1.19471 1.18071 1.03177 0.93147 0.81963 1.91410 1.92677 1.81551 1.46759 1.19071 1.02824 0.91476 0.87400 1.85956 1.40908 1.65607 1.33167 1.23216 0.91574 0.92990 0.98285 0.86115 0.92196 0.94271 0.89223 0.90138 0.89834 0.83112 0.95690 0.98165 0.92390 0.85822 0.94851 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.13 113.37 1.26 1.89 16 2 O -0.33 -9.16 9.24 -79.63 -0.74 -9.90 16 3 C 0.08 2.74 5.71 22.56 0.13 2.87 16 4 C -0.09 -2.76 5.89 -19.78 -0.12 -2.88 16 5 C -0.10 -2.14 9.79 71.24 0.70 -1.44 16 6 C -0.09 -3.32 9.31 22.27 0.21 -3.11 16 7 C -0.08 -3.81 5.08 -19.81 -0.10 -3.91 16 8 C 0.06 3.30 4.83 29.10 0.14 3.44 16 9 C -0.53 -30.76 9.09 25.60 0.23 -30.53 16 10 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 11 C 0.01 0.49 5.46 84.65 0.46 0.95 16 12 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 13 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 C 0.06 2.53 7.24 22.43 0.16 2.69 16 18 F -0.15 -7.21 16.49 44.97 0.74 -6.47 16 19 C 0.04 1.44 5.74 22.59 0.13 1.56 16 20 O -0.34 -12.05 10.07 -80.29 -0.81 -12.85 16 21 C 0.03 0.92 11.13 113.37 1.26 2.18 16 22 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.57 7.53 -2.39 -0.02 1.55 16 27 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 28 H 0.15 4.95 8.03 -2.91 -0.02 4.93 16 29 H 0.02 1.37 8.00 -2.39 -0.02 1.35 16 30 H 0.00 0.01 7.93 -2.38 -0.02 -0.01 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -69.43 302.97 7.07 -62.36 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.09 Total: 2.07 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.47 Total: -26.28 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.54 Total: -22.75 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.74 Total: -6.47 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.43 7.07 -62.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.620 kcal (2) G-P(sol) polarization free energy of solvation -69.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds