Wall clock time and date at job start Mon Mar 30 2020 06:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35950 * 117.00036 * 2 1 4 4 C 1.38742 * 120.03971 * 0.02562 * 3 2 1 5 5 C 1.38170 * 120.07603 * 180.02562 * 4 3 2 6 6 C 1.38222 * 120.13527 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.96644 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47324 * 265.00109 * 7 6 5 9 9 C 1.50706 * 109.47009 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00246 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00018 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00038 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00314 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46875 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47498 * 119.99847 * 13 11 9 16 16 H 1.48501 * 109.47054 * 239.99889 * 13 11 9 17 17 C 1.38709 * 120.06671 * 359.97438 * 6 5 4 18 18 O 1.35957 * 120.03122 * 179.97438 * 17 6 5 19 19 C 1.42905 * 117.00077 * 89.99786 * 18 17 6 20 20 C 1.38762 * 120.03059 * 179.72695 * 3 2 1 21 21 F 1.35092 * 120.06843 * 0.02562 * 20 3 2 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99683 * 1 2 3 24 24 H 1.09004 * 109.46926 * 299.99805 * 1 2 3 25 25 H 1.08003 * 119.96335 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.93636 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47495 * 25.00748 * 7 6 5 28 28 H 1.09009 * 109.46987 * 145.00443 * 7 6 5 29 29 H 1.09000 * 109.47194 * 299.99988 * 8 7 6 30 30 H 1.08994 * 109.47181 * 60.00465 * 8 7 6 31 31 H 0.96999 * 119.99824 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.46938 * 299.99859 * 19 18 17 33 33 H 1.09000 * 109.47155 * 59.99687 * 19 18 17 34 34 H 1.08994 * 109.47169 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9179 3.6069 0.0000 6 6 3.2980 3.6834 -0.0016 7 6 3.9774 5.0285 -0.0028 8 6 4.3178 5.4267 -1.4403 9 6 4.9978 6.7717 -1.4413 10 1 5.1695 7.2907 -0.5099 11 6 5.3997 7.3401 -2.6314 12 7 5.1902 6.7083 -3.7657 13 14 6.2431 9.0068 -2.6327 14 1 6.3598 9.5036 -1.2381 15 1 7.5978 8.8757 -3.2269 16 1 5.4418 9.9664 -3.4341 17 6 4.0583 2.5232 -0.0021 18 8 5.4157 2.5993 -0.0043 19 6 6.0655 2.6363 1.2680 20 6 3.4319 1.2847 0.0057 21 9 4.1696 0.1530 0.0108 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 0.2129 2.3190 0.0005 26 1 1.3282 4.5116 0.0000 27 1 3.3104 5.7729 0.4322 28 1 4.8934 4.9735 0.5856 29 1 4.9849 4.6825 -1.8752 30 1 3.4020 5.4819 -2.0286 31 1 5.4733 7.1080 -4.6029 32 1 5.7241 3.5088 1.8250 33 1 5.8236 1.7317 1.8259 34 1 7.1441 2.6962 1.1235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260431682.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:37 Heat of formation + Delta-G solvation = -125.493105 kcal Electronic energy + Delta-G solvation = -18716.918332 eV Core-core repulsion = 15529.131515 eV Total energy + Delta-G solvation = -3187.786817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.88870 -41.33370 -39.97085 -37.71963 -35.70143 -33.60699 -31.33325 -30.34081 -28.54081 -27.69326 -26.52431 -23.83673 -23.44727 -21.89716 -19.59395 -18.57816 -18.54337 -17.97671 -17.43331 -17.22158 -16.51705 -16.35045 -15.89751 -15.74351 -15.56070 -15.10640 -14.74583 -14.38574 -13.84811 -13.61516 -13.53582 -13.23363 -12.85797 -12.82457 -12.61467 -12.35603 -12.19874 -11.99629 -11.73646 -11.39293 -11.20698 -10.98400 -10.53052 -9.75143 -9.12470 -8.16201 -6.28159 -0.07353 0.14519 1.42040 1.42852 1.55979 2.01953 2.32896 2.44573 2.86552 3.14020 3.17058 3.75343 3.79326 4.07086 4.24835 4.35981 4.40260 4.41355 4.42939 4.56587 4.68177 4.72523 4.80014 4.87221 4.92774 5.09895 5.17307 5.34809 5.44930 5.53870 5.80304 5.88342 6.21916 6.25267 6.43142 6.89465 7.41123 8.95840 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029468 B = 0.005279 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.955630 B = 5303.169654 C = 5789.303886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.331 6.331 3 C 0.096 3.904 4 C -0.171 4.171 5 C -0.071 4.071 6 C -0.112 4.112 7 C -0.055 4.055 8 C 0.040 3.960 9 C -0.538 4.538 10 H 0.065 0.935 11 C -0.002 4.002 12 N -0.936 5.936 13 Si 0.966 3.034 14 H -0.258 1.258 15 H -0.282 1.282 16 H -0.278 1.278 17 C 0.088 3.912 18 O -0.349 6.349 19 C 0.030 3.970 20 C 0.017 3.983 21 F -0.142 7.142 22 H 0.122 0.878 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.180 0.820 26 H 0.161 0.839 27 H 0.079 0.921 28 H 0.060 0.940 29 H -0.017 1.017 30 H -0.008 1.008 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 -10.074 11.504 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.050 3.950 4 C -0.189 4.189 5 C -0.089 4.089 6 C -0.113 4.113 7 C -0.092 4.092 8 C 0.002 3.998 9 C -0.576 4.576 10 H 0.083 0.917 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.791 3.209 14 H -0.182 1.182 15 H -0.208 1.208 16 H -0.203 1.203 17 C 0.043 3.957 18 O -0.266 6.266 19 C -0.063 4.063 20 C -0.003 4.003 21 F -0.121 7.121 22 H 0.140 0.860 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.197 0.803 26 H 0.178 0.822 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.001 0.999 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.534 -10.302 11.194 17.953 hybrid contribution 0.667 0.468 -0.402 0.909 sum -8.867 -9.834 10.791 17.081 Atomic orbital electron populations 1.23503 0.75301 1.06095 1.03039 1.86093 1.24442 1.25244 1.88712 1.18819 0.89519 0.86875 0.99782 1.21476 1.01915 0.89763 1.05760 1.21178 0.92473 0.99064 0.96175 1.20446 0.94801 0.94836 1.01210 1.20431 0.99219 0.91095 0.98484 1.18875 0.94589 0.94724 0.91567 1.21716 1.38272 1.04371 0.93231 0.91659 1.26002 0.96753 1.01960 0.95194 1.70139 1.48676 1.40367 0.98447 0.85383 0.77888 0.78909 0.78755 1.18160 1.20785 1.20318 1.18455 0.84113 0.90434 1.02689 1.86085 1.15031 1.93953 1.31524 1.23231 0.98686 1.01254 0.83136 1.17526 0.87466 0.81919 1.13423 1.91403 1.77021 1.48936 1.94704 0.85967 0.91231 0.90523 0.80276 0.82190 0.90275 0.92137 0.99903 0.98960 0.92904 0.92444 0.92683 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -8.67 10.36 -92.99 -0.96 -9.63 16 3 C 0.10 2.88 6.69 22.52 0.15 3.03 16 4 C -0.17 -4.21 9.04 22.37 0.20 -4.00 16 5 C -0.07 -2.06 9.67 22.25 0.22 -1.85 16 6 C -0.11 -4.15 5.15 -19.76 -0.10 -4.25 16 7 C -0.06 -2.30 5.00 29.85 0.15 -2.15 16 8 C 0.04 2.15 4.96 29.85 0.15 2.30 16 9 C -0.54 -30.81 9.11 25.60 0.23 -30.57 16 10 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 11 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 12 N -0.94 -58.41 13.29 21.45 0.28 -58.12 16 13 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 14 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 C 0.09 3.40 5.70 22.52 0.13 3.53 16 18 O -0.35 -14.15 9.55 -93.06 -0.89 -15.04 16 19 C 0.03 0.90 10.80 113.37 1.22 2.12 16 20 C 0.02 0.61 7.32 22.53 0.16 0.78 16 21 F -0.14 -5.38 16.95 44.97 0.76 -4.62 16 22 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 24 H 0.08 0.79 7.66 -2.38 -0.02 0.77 16 25 H 0.18 2.78 6.29 -2.91 -0.02 2.76 16 26 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 27 H 0.08 2.96 8.05 -2.38 -0.02 2.94 16 28 H 0.06 2.49 6.41 -2.38 -0.02 2.48 16 29 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.06 1.60 7.17 -2.39 -0.02 1.58 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -73.85 297.76 6.41 -67.43 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.10 Total: 2.81 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.09 Total: -29.38 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.28 Total: -58.12 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -1.85 Total: -24.67 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.76 Total: -4.62 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -73.85 6.41 -67.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431682.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.058 kcal (2) G-P(sol) polarization free energy of solvation -73.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds