Wall clock time and date at job start Mon Mar 30 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36055 * 116.99460 * 2 1 4 4 C 1.39098 * 120.08204 * 270.02275 * 3 2 1 5 5 O 1.35999 * 120.05954 * 359.97438 * 4 3 2 6 6 C 1.38580 * 119.88178 * 179.97438 * 4 3 2 7 7 C 1.50703 * 119.98296 * 180.02562 * 6 4 3 8 8 C 1.38262 * 120.04072 * 0.02562 * 6 4 3 9 9 C 1.38225 * 120.15517 * 0.02562 * 8 6 4 10 10 C 1.50698 * 119.93692 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46966 * 99.99926 * 10 9 8 12 12 C 1.50703 * 109.47020 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99901 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00029 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99992 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99921 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47369 * 90.00060 * 16 14 12 18 18 H 1.48504 * 109.46825 * 210.00051 * 16 14 12 19 19 H 1.48498 * 109.47082 * 329.99609 * 16 14 12 20 20 C 1.38450 * 120.12323 * 359.97408 * 9 8 6 21 21 F 1.35102 * 120.02248 * 179.97438 * 20 9 8 22 22 H 1.09005 * 109.47179 * 60.00266 * 1 2 3 23 23 H 1.08999 * 109.46351 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47393 * 299.99594 * 1 2 3 25 25 H 0.96706 * 113.99231 * 90.00311 * 5 4 3 26 26 H 1.08997 * 109.47097 * 269.99926 * 7 6 4 27 27 H 1.09006 * 109.47071 * 29.99434 * 7 6 4 28 28 H 1.09000 * 109.47516 * 149.99861 * 7 6 4 29 29 H 1.07993 * 119.92100 * 180.28302 * 8 6 4 30 30 H 1.08997 * 109.47073 * 219.99827 * 10 9 8 31 31 H 1.09006 * 109.47397 * 340.00385 * 10 9 8 32 32 H 1.08997 * 109.47145 * 299.99858 * 11 10 9 33 33 H 1.08998 * 109.46943 * 60.00288 * 11 10 9 34 34 H 0.96997 * 119.99955 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 2.3627 1.8338 -1.2036 5 8 2.0554 1.2304 -2.3831 6 6 2.9912 3.0688 -1.1988 7 6 3.3341 3.7445 -2.5015 8 6 3.3039 3.6816 0.0005 9 6 2.9915 3.0650 1.1975 10 6 3.3351 3.7371 2.5018 11 6 2.0871 4.4156 3.0702 12 6 2.4306 5.0872 4.3749 13 1 3.4383 5.0356 4.7599 14 6 1.4583 5.7675 5.0769 15 7 0.2313 5.8307 4.6078 16 14 1.8842 6.6005 6.6938 17 1 2.3203 7.9957 6.4320 18 1 0.6885 6.6126 7.5744 19 1 2.9823 5.8554 7.3603 20 6 2.3636 1.8311 1.2004 21 9 2.0597 1.2301 2.3716 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.1791 1.4568 -2.7240 26 1 4.3327 3.4413 -2.8162 27 1 2.6097 3.4548 -3.2628 28 1 3.3080 4.8259 -2.3679 29 1 3.7896 4.6462 0.0021 30 1 3.6980 2.9921 3.2099 31 1 4.1098 4.4850 2.3323 32 1 1.7243 5.1606 2.3621 33 1 1.3124 3.6678 3.2398 34 1 -0.4528 6.3090 5.1019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:06 Heat of formation + Delta-G solvation = -119.832837 kcal Electronic energy + Delta-G solvation = -18752.546327 eV Core-core repulsion = 15565.004957 eV Total energy + Delta-G solvation = -3187.541370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.45441 -40.18280 -37.70642 -36.84865 -33.92540 -32.30078 -31.13267 -28.74723 -26.88070 -26.45277 -25.00695 -22.29483 -21.67851 -20.04048 -18.61070 -17.36415 -17.04482 -16.49856 -16.18017 -15.68191 -14.72225 -14.59006 -14.46228 -14.21929 -13.69941 -13.56584 -13.32691 -12.91573 -12.51588 -12.32761 -12.12840 -11.77351 -11.67333 -11.42582 -10.98187 -10.90576 -10.79524 -10.56467 -9.94198 -9.81154 -9.63526 -9.14900 -8.41831 -8.37554 -8.07759 -6.02693 -4.05695 1.13090 1.23157 3.30799 3.35680 3.37332 3.41303 3.78377 3.97923 4.43910 4.69087 4.87761 4.99804 5.21863 5.26779 5.33160 5.33421 5.44545 5.58212 5.60609 5.71068 5.76885 6.01587 6.15891 6.26965 6.40461 6.53104 6.68270 6.72195 6.99073 7.25679 7.62071 7.72246 7.74285 7.95758 8.36101 9.00494 9.58442 11.08579 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.005484 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.592660 B = 5104.475434 C = 5661.298507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.322 6.322 3 C 0.036 3.964 4 C 0.093 3.907 5 O -0.481 6.481 6 C -0.109 4.109 7 C -0.103 4.103 8 C -0.085 4.085 9 C -0.082 4.082 10 C -0.079 4.079 11 C 0.030 3.970 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.094 3.906 21 F -0.123 7.123 22 H 0.042 0.958 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.382 0.618 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -6.616 -13.797 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C -0.009 4.009 4 C 0.048 3.952 5 O -0.290 6.290 6 C -0.110 4.110 7 C -0.160 4.160 8 C -0.103 4.103 9 C -0.083 4.083 10 C -0.117 4.117 11 C -0.007 4.007 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.074 3.926 21 F -0.101 7.101 22 H 0.061 0.939 23 H 0.113 0.887 24 H 0.069 0.931 25 H 0.237 0.763 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.398 -7.006 -13.654 15.533 hybrid contribution -0.706 0.656 1.086 1.452 sum 1.693 -6.350 -12.568 14.183 Atomic orbital electron populations 1.23015 0.79129 1.03257 1.00745 1.86130 1.19848 1.23619 1.94240 1.18914 1.02089 0.88806 0.91065 1.18109 1.01586 0.91310 0.84243 1.84898 1.38723 1.70450 1.34942 1.20108 1.00861 0.93522 0.96517 1.20612 1.02007 0.99965 0.93367 1.20819 0.99679 1.00072 0.89758 1.20460 0.96972 0.92431 0.98410 1.20841 1.01672 0.98840 0.90302 1.19080 0.90979 0.95167 0.95498 1.21212 0.95978 1.32999 1.05778 0.92475 1.25016 0.94983 0.96414 0.97952 1.69967 1.01746 1.42633 1.39057 0.86570 0.77938 0.79821 0.83547 1.20625 1.21207 1.19799 1.17759 1.01891 0.92308 0.80689 1.91511 1.90813 1.82711 1.45085 0.93885 0.88673 0.93058 0.76322 0.90997 0.91560 0.91233 0.84281 0.91497 0.91324 0.96349 0.96319 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.13 101.05 1.13 1.53 16 2 O -0.32 -5.27 10.07 -34.43 -0.35 -5.62 16 3 C 0.04 0.62 5.74 -39.08 -0.22 0.40 16 4 C 0.09 1.38 6.69 -39.14 -0.26 1.11 16 5 O -0.48 -5.98 12.33 -34.26 -0.42 -6.40 16 6 C -0.11 -1.52 5.89 -104.49 -0.62 -2.13 16 7 C -0.10 -1.06 9.79 36.01 0.35 -0.71 16 8 C -0.09 -1.32 9.31 -39.58 -0.37 -1.69 16 9 C -0.08 -1.52 5.14 -104.55 -0.54 -2.05 16 10 C -0.08 -1.66 5.00 -27.88 -0.14 -1.80 16 11 C 0.03 0.77 4.95 -27.88 -0.14 0.63 16 12 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 13 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 C 0.09 1.78 7.24 -39.32 -0.28 1.50 16 21 F -0.12 -2.56 16.50 2.25 0.04 -2.52 16 22 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.38 2.95 9.06 45.56 0.41 3.37 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.60 7.53 -51.93 -0.39 0.21 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.14 1.88 8.03 -52.49 -0.42 1.46 16 30 H 0.07 1.42 7.94 -51.93 -0.41 1.00 16 31 H 0.07 1.32 8.00 -51.93 -0.42 0.90 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 302.06 15.07 4.55 4.55 Total: -1.00 -32.76 302.06 -5.69 -38.45 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.72 Total: -2.19 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.50 Total: -16.69 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.77 Total: -12.02 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.76 -5.69 -38.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.383 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds