Wall clock time and date at job start Mon Mar 30 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36055 * 116.99460 * 2 1 4 4 C 1.39098 * 120.08204 * 270.02275 * 3 2 1 5 5 O 1.35999 * 120.05954 * 359.97438 * 4 3 2 6 6 C 1.38580 * 119.88178 * 179.97438 * 4 3 2 7 7 C 1.50703 * 119.98296 * 180.02562 * 6 4 3 8 8 C 1.38262 * 120.04072 * 0.02562 * 6 4 3 9 9 C 1.38225 * 120.15517 * 0.02562 * 8 6 4 10 10 C 1.50698 * 119.93692 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46966 * 99.99926 * 10 9 8 12 12 C 1.50703 * 109.47020 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99901 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00029 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99992 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99921 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47369 * 90.00060 * 16 14 12 18 18 H 1.48504 * 109.46825 * 210.00051 * 16 14 12 19 19 H 1.48498 * 109.47082 * 329.99609 * 16 14 12 20 20 C 1.38450 * 120.12323 * 359.97408 * 9 8 6 21 21 F 1.35102 * 120.02248 * 179.97438 * 20 9 8 22 22 H 1.09005 * 109.47179 * 60.00266 * 1 2 3 23 23 H 1.08999 * 109.46351 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47393 * 299.99594 * 1 2 3 25 25 H 0.96706 * 113.99231 * 90.00311 * 5 4 3 26 26 H 1.08997 * 109.47097 * 269.99926 * 7 6 4 27 27 H 1.09006 * 109.47071 * 29.99434 * 7 6 4 28 28 H 1.09000 * 109.47516 * 149.99861 * 7 6 4 29 29 H 1.07993 * 119.92100 * 180.28302 * 8 6 4 30 30 H 1.08997 * 109.47073 * 219.99827 * 10 9 8 31 31 H 1.09006 * 109.47397 * 340.00385 * 10 9 8 32 32 H 1.08997 * 109.47145 * 299.99858 * 11 10 9 33 33 H 1.08998 * 109.46943 * 60.00288 * 11 10 9 34 34 H 0.96997 * 119.99955 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 2.3627 1.8338 -1.2036 5 8 2.0554 1.2304 -2.3831 6 6 2.9912 3.0688 -1.1988 7 6 3.3341 3.7445 -2.5015 8 6 3.3039 3.6816 0.0005 9 6 2.9915 3.0650 1.1975 10 6 3.3351 3.7371 2.5018 11 6 2.0871 4.4156 3.0702 12 6 2.4306 5.0872 4.3749 13 1 3.4383 5.0356 4.7599 14 6 1.4583 5.7675 5.0769 15 7 0.2313 5.8307 4.6078 16 14 1.8842 6.6005 6.6938 17 1 2.3203 7.9957 6.4320 18 1 0.6885 6.6126 7.5744 19 1 2.9823 5.8554 7.3603 20 6 2.3636 1.8311 1.2004 21 9 2.0597 1.2301 2.3716 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.1791 1.4568 -2.7240 26 1 4.3327 3.4413 -2.8162 27 1 2.6097 3.4548 -3.2628 28 1 3.3080 4.8259 -2.3679 29 1 3.7896 4.6462 0.0021 30 1 3.6980 2.9921 3.2099 31 1 4.1098 4.4850 2.3323 32 1 1.7243 5.1606 2.3621 33 1 1.3124 3.6678 3.2398 34 1 -0.4528 6.3090 5.1019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:06 Heat of formation + Delta-G solvation = -141.254491 kcal Electronic energy + Delta-G solvation = -18753.475240 eV Core-core repulsion = 15565.004957 eV Total energy + Delta-G solvation = -3188.470282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.95449 -41.36986 -38.90847 -38.02809 -35.75518 -33.93293 -32.51363 -30.31364 -27.98889 -27.56802 -26.79300 -23.88296 -23.09194 -21.54272 -19.76517 -18.71992 -18.57500 -18.12703 -17.59356 -17.00781 -16.51998 -16.04651 -15.70376 -15.37634 -15.11744 -14.82798 -14.73635 -14.42407 -14.11074 -13.55389 -13.40027 -13.17883 -12.95605 -12.80150 -12.74745 -12.39444 -12.24939 -12.02392 -11.79385 -11.53707 -11.27078 -10.94261 -10.57673 -9.66715 -9.40105 -8.21718 -6.33716 -0.10455 -0.02556 1.39854 1.41685 1.52807 2.15792 2.40576 2.60190 2.83500 3.11537 3.45924 3.72575 3.77408 4.08080 4.23085 4.31819 4.34493 4.49767 4.63767 4.68050 4.74116 4.84204 4.86922 4.89226 5.03345 5.17412 5.26358 5.35431 5.45280 5.59591 5.68405 5.79585 6.18613 6.19633 6.74680 6.82051 7.35715 8.90177 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.005484 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.592660 B = 5104.475434 C = 5661.298507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C 0.028 3.972 4 C 0.105 3.895 5 O -0.480 6.480 6 C -0.098 4.098 7 C -0.102 4.102 8 C -0.083 4.083 9 C -0.105 4.105 10 C -0.065 4.065 11 C 0.039 3.961 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.967 3.033 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.058 3.942 21 F -0.146 7.146 22 H 0.068 0.932 23 H 0.122 0.878 24 H 0.031 0.969 25 H 0.406 0.594 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.055 0.945 31 H 0.086 0.914 32 H -0.001 1.001 33 H -0.018 1.018 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -5.996 -15.477 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.257 6.257 3 C -0.017 4.017 4 C 0.059 3.941 5 O -0.292 6.292 6 C -0.098 4.098 7 C -0.158 4.158 8 C -0.101 4.101 9 C -0.106 4.106 10 C -0.103 4.103 11 C 0.002 3.998 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.039 3.961 21 F -0.125 7.125 22 H 0.087 0.913 23 H 0.140 0.860 24 H 0.050 0.950 25 H 0.265 0.735 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.178 0.822 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.017 0.983 33 H 0.000 1.000 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.186 -6.390 -15.357 16.936 hybrid contribution -1.016 0.391 1.460 1.822 sum 2.170 -5.999 -13.897 15.291 Atomic orbital electron populations 1.23263 0.77218 1.05167 1.01034 1.86081 1.21780 1.23549 1.94310 1.19101 1.02373 0.89077 0.91177 1.18136 1.00579 0.91137 0.84223 1.84840 1.40602 1.70336 1.33443 1.20488 0.98848 0.92942 0.97568 1.20737 1.03108 1.00536 0.91424 1.21075 0.99149 1.00692 0.89187 1.20317 0.99091 0.92803 0.98355 1.20537 0.99530 0.98706 0.91492 1.18884 0.92305 0.93801 0.94855 1.21671 0.96452 1.33238 1.06860 0.91817 1.25994 0.94741 0.97054 1.01953 1.70105 1.02903 1.43531 1.40815 0.85413 0.77864 0.79023 0.78552 1.19269 1.20876 1.18852 1.18148 1.03856 0.93325 0.80818 1.91435 1.91331 1.83198 1.46524 0.91349 0.86028 0.95001 0.73472 0.89711 0.89799 0.89787 0.82183 0.92651 0.89550 0.98258 1.00006 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.13 113.37 1.26 1.91 16 2 O -0.34 -11.07 10.07 -80.29 -0.81 -11.88 16 3 C 0.03 0.95 5.74 22.59 0.13 1.08 16 4 C 0.11 2.90 6.69 22.56 0.15 3.05 16 5 O -0.48 -10.31 12.33 -79.66 -0.98 -11.29 16 6 C -0.10 -2.46 5.89 -19.78 -0.12 -2.58 16 7 C -0.10 -1.68 9.79 71.24 0.70 -0.99 16 8 C -0.08 -2.47 9.31 22.27 0.21 -2.26 16 9 C -0.10 -3.96 5.14 -19.82 -0.10 -4.06 16 10 C -0.07 -2.82 5.00 29.85 0.15 -2.67 16 11 C 0.04 2.10 4.95 29.85 0.15 2.24 16 12 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 13 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 16 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 20 C 0.06 2.31 7.24 22.44 0.16 2.47 16 21 F -0.15 -6.54 16.50 44.97 0.74 -5.80 16 22 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.41 4.67 9.06 -74.05 -0.67 4.00 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.13 7.53 -2.38 -0.02 1.11 16 28 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.16 3.97 8.03 -2.91 -0.02 3.95 16 30 H 0.05 2.45 7.94 -2.39 -0.02 2.43 16 31 H 0.09 3.33 8.00 -2.38 -0.02 3.31 16 32 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -73.06 302.06 5.09 -67.97 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.44 Total: 4.14 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.38 Total: -32.52 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.28 Total: -57.17 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -1.79 Total: -23.17 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.74 Total: -5.80 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -73.06 5.09 -67.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.285 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds