Wall clock time and date at job start Mon Mar 30 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35987 * 116.99991 * 2 1 4 4 C 1.38569 * 120.06468 * 270.02484 * 3 2 1 5 5 C 1.50694 * 120.00762 * 359.97438 * 4 3 2 6 6 C 1.38421 * 119.97626 * 179.97438 * 4 3 2 7 7 F 1.35101 * 119.94994 * 180.02562 * 6 4 3 8 8 C 1.38447 * 120.09638 * 0.02562 * 6 4 3 9 9 C 1.50703 * 119.94045 * 179.97438 * 8 6 4 10 10 C 1.38250 * 120.12014 * 359.70487 * 8 6 4 11 11 C 1.50704 * 119.98846 * 180.27177 * 10 8 6 12 12 C 1.50699 * 109.47527 * 270.28160 * 11 10 8 13 13 H 1.07997 * 119.99455 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00165 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99608 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47156 * 59.99940 * 16 14 12 18 18 H 1.48497 * 109.46949 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47052 * 299.99914 * 16 14 12 20 20 C 1.38537 * 120.02231 * 0.55520 * 10 8 6 21 21 O 1.36040 * 120.04896 * 179.74369 * 20 10 8 22 22 H 1.09000 * 109.47201 * 59.99686 * 1 2 3 23 23 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47061 * 299.99775 * 1 2 3 25 25 H 1.09006 * 109.46828 * 90.00457 * 5 4 3 26 26 H 1.09003 * 109.47303 * 209.99741 * 5 4 3 27 27 H 1.09004 * 109.47745 * 330.00174 * 5 4 3 28 28 H 1.09004 * 109.47267 * 89.99867 * 9 8 6 29 29 H 1.08995 * 109.46945 * 210.00042 * 9 8 6 30 30 H 1.09002 * 109.46987 * 330.00108 * 9 8 6 31 31 H 1.09005 * 109.47161 * 30.28345 * 11 10 8 32 32 H 1.08996 * 109.47098 * 150.27724 * 11 10 8 33 33 H 0.97005 * 119.99857 * 179.97438 * 15 14 12 34 34 H 0.96700 * 114.00170 * 269.72344 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 2.3611 1.8304 -1.1993 5 6 2.0198 1.1605 -2.5053 6 6 2.9890 3.0640 -1.1971 7 9 3.2951 3.6671 -2.3667 8 6 3.3038 3.6807 0.0018 9 6 3.9880 5.0235 0.0000 10 6 2.9867 3.0695 1.2006 11 6 3.3252 3.7463 2.5039 12 6 4.7068 3.3324 2.9409 13 1 5.2819 2.6473 2.3357 14 6 5.2359 3.8273 4.1139 15 7 4.5353 4.6611 4.8511 16 14 6.9482 3.3136 4.6560 17 1 7.9355 3.7120 3.6208 18 1 7.2813 3.9796 5.9408 19 1 6.9887 1.8404 4.8377 20 6 2.3631 1.8324 1.2043 21 8 2.0555 1.2282 2.3836 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.0216 1.4653 -2.8199 26 1 2.7452 1.4534 -3.2643 27 1 2.0455 0.0785 -2.3763 28 1 3.2373 5.8138 0.0000 29 1 4.6116 5.1147 0.8893 30 1 4.6100 5.1132 -0.8907 31 1 3.2952 4.8277 2.3703 32 1 2.6008 3.4539 3.2640 33 1 4.9075 5.0090 5.6766 34 1 2.7537 0.6525 2.7245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:22 Heat of formation + Delta-G solvation = -119.015134 kcal Electronic energy + Delta-G solvation = -19213.138882 eV Core-core repulsion = 16025.632971 eV Total energy + Delta-G solvation = -3187.505911 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.53019 -40.00475 -37.44463 -36.16871 -33.78358 -32.43506 -29.99691 -29.02731 -27.41515 -26.01697 -25.01464 -22.73306 -21.41249 -20.11845 -17.45829 -17.27914 -17.14841 -16.38370 -15.73983 -15.28996 -14.95563 -14.61806 -14.34730 -14.25967 -13.24041 -13.07334 -12.82178 -12.73016 -12.54666 -12.16585 -12.07102 -11.83712 -11.47228 -11.24097 -11.10558 -10.78231 -10.60442 -10.53314 -10.33315 -9.94532 -9.52404 -9.27090 -8.48353 -7.90688 -7.78218 -6.11092 -4.16363 1.40512 1.59270 3.27207 3.32399 3.34554 3.58509 4.06744 4.38420 4.73781 4.75848 5.06283 5.23856 5.27676 5.36942 5.46274 5.61011 5.65888 5.69489 5.77454 5.91882 5.94923 6.10220 6.20591 6.43908 6.50530 6.68169 6.80131 6.86359 7.16369 7.48667 7.61995 7.71074 7.84019 8.20345 8.30488 8.88323 9.47855 10.98386 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.007288 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.291320 B = 3841.201757 C = 4561.581600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.329 6.329 3 C 0.081 3.919 4 C -0.151 4.151 5 C -0.101 4.101 6 C 0.091 3.909 7 F -0.141 7.141 8 C -0.106 4.106 9 C -0.114 4.114 10 C -0.030 4.030 11 C 0.052 3.948 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.087 3.913 21 O -0.483 6.483 22 H 0.041 0.959 23 H 0.089 0.911 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 -5.461 -10.429 13.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.245 6.245 3 C 0.037 3.963 4 C -0.153 4.153 5 C -0.158 4.158 6 C 0.072 3.928 7 F -0.120 7.120 8 C -0.107 4.107 9 C -0.170 4.170 10 C -0.031 4.031 11 C 0.015 3.985 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.041 3.959 21 O -0.293 6.293 22 H 0.059 0.941 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.983 -5.204 -10.355 13.043 hybrid contribution 1.260 -0.300 0.229 1.316 sum -4.723 -5.504 -10.126 12.455 Atomic orbital electron populations 1.22939 0.79320 1.02600 1.00703 1.85939 1.19660 1.24629 1.94306 1.18527 1.00240 0.86690 0.90871 1.19741 1.04835 0.94663 0.96014 1.20502 1.01362 1.00785 0.93140 1.17127 1.02458 0.92248 0.80952 1.91405 1.91369 1.82983 1.46230 1.19773 1.01525 0.98857 0.90536 1.20765 1.00150 0.92066 1.04028 1.20736 0.91527 0.93419 0.97377 1.18328 0.97343 0.95684 0.87116 1.20905 0.99597 1.28258 1.06613 0.92639 1.24970 0.97688 0.94938 0.96321 1.69941 1.37372 1.31156 1.14291 0.86617 0.84382 0.78871 0.77954 1.20135 1.21181 1.20151 1.18600 1.00230 0.92408 0.84663 1.84688 1.44806 1.64627 1.35196 0.94061 0.89256 0.93123 0.91777 0.91509 0.90856 0.91576 0.88436 0.92264 0.94549 0.94071 0.92649 0.75211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.13 101.05 1.12 1.61 16 2 O -0.33 -5.35 9.24 -34.25 -0.32 -5.67 16 3 C 0.08 1.46 5.71 -39.13 -0.22 1.24 16 4 C -0.15 -2.59 5.90 -104.44 -0.62 -3.20 16 5 C -0.10 -1.37 9.61 36.00 0.35 -1.02 16 6 C 0.09 1.67 7.18 -39.44 -0.28 1.38 16 7 F -0.14 -2.42 15.67 2.25 0.04 -2.39 16 8 C -0.11 -2.10 5.89 -104.54 -0.62 -2.71 16 9 C -0.11 -2.08 9.00 36.01 0.32 -1.76 16 10 C -0.03 -0.64 5.08 -104.51 -0.53 -1.17 16 11 C 0.05 1.29 4.19 -29.03 -0.12 1.17 16 12 C -0.52 -13.66 8.67 -34.44 -0.30 -13.96 16 13 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 16 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.09 1.74 6.69 -39.14 -0.26 1.48 16 21 O -0.48 -9.46 12.33 -34.41 -0.42 -9.89 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.86 7.64 -51.93 -0.40 0.46 16 27 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.10 2.00 6.36 -51.93 -0.33 1.67 16 30 H 0.06 0.98 7.63 -51.93 -0.40 0.58 16 31 H 0.04 0.94 6.72 -51.93 -0.35 0.59 16 32 H 0.04 1.11 7.52 -51.93 -0.39 0.72 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.39 6.54 9.07 45.56 0.41 6.95 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -29.32 295.10 -5.29 -34.61 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.50 Total: 3.06 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.25 Total: -15.34 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.74 Total: -24.63 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.74 Total: -15.56 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.32 -5.29 -34.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.401 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds