Wall clock time and date at job start Mon Mar 30 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99969 * 2 1 4 4 C 1.39746 * 111.00373 * 123.95446 * 2 1 3 5 5 C 1.38878 * 120.07916 * 300.00318 * 4 2 1 6 6 C 1.38115 * 119.94152 * 179.97438 * 5 4 2 7 7 C 1.50697 * 119.95696 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46613 * 20.00167 * 7 6 5 9 9 N 1.46906 * 109.46982 * 139.99953 * 7 6 5 10 10 C 1.50698 * 109.47576 * 260.00200 * 7 6 5 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99554 * 359.97438 * 12 10 7 14 14 Si 1.86790 * 120.00086 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47245 * 89.99579 * 14 12 10 16 16 H 1.48501 * 109.47356 * 209.99508 * 14 12 10 17 17 H 1.48499 * 109.47321 * 329.99647 * 14 12 10 18 18 C 1.38293 * 120.09091 * 0.25421 * 6 5 4 19 19 C 1.38274 * 120.15837 * 359.48803 * 18 6 5 20 20 C 1.38213 * 120.05699 * 0.51274 * 19 18 6 21 21 Cl 1.73606 * 120.04453 * 179.76895 * 20 19 18 22 22 H 1.08999 * 109.46862 * 296.04127 * 1 2 3 23 23 H 1.08999 * 109.47266 * 56.04573 * 1 2 3 24 24 H 1.09005 * 109.46674 * 176.04866 * 1 2 3 25 25 H 1.09000 * 109.47589 * 183.95446 * 3 2 1 26 26 H 1.09005 * 109.46957 * 303.96000 * 3 2 1 27 27 H 1.08997 * 109.46958 * 63.95536 * 3 2 1 28 28 H 1.07999 * 120.02936 * 359.95126 * 5 4 2 29 29 H 1.00896 * 111.00309 * 60.00059 * 9 7 6 30 30 H 1.00902 * 110.99923 * 183.96223 * 9 7 6 31 31 H 0.97005 * 119.99198 * 180.02562 * 13 12 10 32 32 H 1.08003 * 119.92373 * 179.72617 * 18 6 5 33 33 H 1.07998 * 119.97599 * 180.26017 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9699 -0.7287 1.0821 5 6 1.6584 -0.3487 2.3811 6 6 2.1545 -1.0712 3.4485 7 6 1.8172 -0.6588 4.8581 8 1 0.9265 -0.0305 4.8495 9 7 1.5642 -1.8559 5.6713 10 6 2.9706 0.1129 5.4455 11 1 3.8593 0.2870 4.8570 12 6 2.8918 0.5959 6.7345 13 7 1.8098 0.3835 7.4513 14 14 4.3218 1.5518 7.4628 15 1 4.1482 2.9983 7.1749 16 1 4.3612 1.3409 8.9322 17 1 5.5931 1.0764 6.8603 18 6 2.9652 -2.1692 3.2256 19 6 3.2736 -2.5542 1.9339 20 6 2.7806 -1.8358 0.8610 21 17 3.1728 -2.3159 -0.7606 22 1 -0.3633 0.4512 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0253 -0.0708 25 1 3.0828 1.3433 -0.0709 26 1 1.5897 1.9164 -0.8524 27 1 1.7044 1.8723 0.9233 28 1 1.0290 0.5113 2.5564 29 1 2.3756 -2.4551 5.6949 30 1 1.2729 -1.6044 6.6040 31 1 1.7543 0.7236 8.3581 32 1 3.3553 -2.7296 4.0624 33 1 3.9035 -3.4146 1.7631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:00 Heat of formation + Delta-G solvation = 4.030062 kcal Electronic energy + Delta-G solvation = -16644.733926 eV Core-core repulsion = 13923.192781 eV Total energy + Delta-G solvation = -2721.541145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93882 -38.05412 -37.33967 -36.02311 -33.45334 -31.36083 -30.40341 -28.49775 -27.95112 -25.53114 -24.68717 -22.75434 -20.99617 -18.60960 -18.21035 -17.03060 -16.85765 -16.51981 -16.01210 -15.93371 -14.96731 -14.88141 -14.63051 -14.11521 -13.94286 -13.52901 -13.27791 -13.22002 -13.07899 -12.83550 -12.63802 -12.62026 -12.35970 -12.22994 -11.81480 -11.62053 -11.54670 -10.74277 -9.77348 -9.55009 -9.38735 -9.15418 -8.15539 -6.42083 0.30800 0.37083 1.34286 1.35251 1.38186 1.47415 2.33158 2.75623 2.86957 3.02383 3.91606 4.06144 4.21052 4.38730 4.41801 4.44627 4.59734 4.62274 4.66694 4.77100 4.88249 4.96050 4.97020 5.16957 5.29747 5.43623 5.61110 5.72247 5.90411 5.91423 6.03679 6.30949 6.59785 6.87886 7.08791 7.34832 8.78567 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.006075 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.535221 B = 4608.207027 C = 4845.194614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.506 5.506 3 C 0.029 3.971 4 C 0.092 3.908 5 C -0.149 4.149 6 C -0.034 4.034 7 C 0.245 3.755 8 H 0.010 0.990 9 N -0.842 5.842 10 C -0.559 4.559 11 H 0.048 0.952 12 C 0.025 3.975 13 N -0.915 5.915 14 Si 0.957 3.043 15 H -0.278 1.278 16 H -0.279 1.279 17 H -0.271 1.271 18 C -0.107 4.107 19 C -0.102 4.102 20 C -0.039 4.039 21 Cl -0.058 7.058 22 H 0.024 0.976 23 H 0.097 0.903 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.023 0.977 28 H 0.113 0.887 29 H 0.321 0.679 30 H 0.346 0.654 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 -2.261 -12.901 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.227 5.227 3 C -0.118 4.118 4 C -0.002 4.002 5 C -0.170 4.170 6 C -0.036 4.036 7 C 0.134 3.866 8 H 0.028 0.972 9 N -0.371 5.371 10 C -0.598 4.598 11 H 0.066 0.934 12 C -0.176 4.176 13 N -0.554 5.554 14 Si 0.783 3.217 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.196 1.196 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.067 4.067 21 Cl -0.029 7.029 22 H 0.043 0.957 23 H 0.115 0.885 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.042 0.958 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.471 -2.640 -13.865 14.122 hybrid contribution 1.018 1.466 2.060 2.726 sum 1.489 -1.174 -11.805 11.956 Atomic orbital electron populations 1.22497 0.84985 1.02854 1.01502 1.59770 1.09320 1.14569 1.39040 1.22485 1.00860 0.86968 1.01463 1.18512 0.97804 0.94941 0.88987 1.21356 1.02543 1.00836 0.92254 1.20271 0.93880 0.93671 0.95759 1.17792 0.93706 0.88471 0.86600 0.97215 1.59492 1.38847 1.18694 1.20047 1.21993 1.02579 1.36293 0.98984 0.93417 1.25709 0.98200 0.96287 0.97362 1.69840 1.28312 1.46626 1.10616 0.85573 0.79733 0.78880 0.77560 1.20382 1.20454 1.19551 1.20992 0.98098 0.96844 0.96648 1.21172 1.00220 1.00300 0.90417 1.20787 1.02050 0.97346 0.86491 1.98310 1.92788 1.90919 1.20868 0.95716 0.88482 0.91510 0.91757 0.88405 0.95843 0.86882 0.86894 0.83919 0.92213 0.85089 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.35 127.69 1.19 1.88 16 2 N -0.51 -14.32 4.39 -744.96 -3.27 -17.59 16 3 C 0.03 0.72 9.38 127.69 1.20 1.92 16 4 C 0.09 3.09 4.73 38.21 0.18 3.27 16 5 C -0.15 -5.76 8.19 22.39 0.18 -5.57 16 6 C -0.03 -1.45 4.89 -19.88 -0.10 -1.55 16 7 C 0.24 12.08 2.95 43.42 0.13 12.21 16 8 H 0.01 0.55 8.00 -2.39 -0.02 0.53 16 9 N -0.84 -39.42 9.02 -174.95 -1.58 -41.00 16 10 C -0.56 -29.57 8.70 25.60 0.22 -29.35 16 11 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 12 C 0.03 1.32 5.38 84.65 0.46 1.77 16 13 N -0.91 -49.71 11.54 21.45 0.25 -49.46 16 14 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 C -0.11 -3.96 9.28 22.29 0.21 -3.75 16 19 C -0.10 -3.22 9.82 22.27 0.22 -3.00 16 20 C -0.04 -1.25 6.34 22.44 0.14 -1.11 16 21 Cl -0.06 -1.59 28.44 -2.72 -0.08 -1.67 16 22 H 0.02 0.64 7.13 -2.39 -0.02 0.62 16 23 H 0.10 1.82 8.12 -2.39 -0.02 1.80 16 24 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.10 1.88 8.12 -2.38 -0.02 1.87 16 27 H 0.02 0.63 7.34 -2.39 -0.02 0.62 16 28 H 0.11 4.43 7.00 -2.91 -0.02 4.41 16 29 H 0.32 13.94 7.34 -89.70 -0.66 13.29 16 30 H 0.35 17.50 7.08 -89.69 -0.63 16.86 16 31 H 0.27 13.88 8.31 -92.70 -0.77 13.11 16 32 H 0.13 4.65 6.67 -2.91 -0.02 4.63 16 33 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -56.35 290.43 1.22 -55.12 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.16 Total: 33.79 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.03 Total: -23.27 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.60 Total: -108.05 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -56.35 1.22 -55.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.154 kcal (2) G-P(sol) polarization free energy of solvation -56.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds