Wall clock time and date at job start Mon Mar 30 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39757 * 110.99854 * 236.04653 * 2 1 3 5 5 C 1.38886 * 120.07629 * 59.72767 * 4 2 1 6 6 C 1.38109 * 119.93340 * 179.72109 * 5 4 2 7 7 C 1.50701 * 119.95313 * 180.27696 * 6 5 4 8 8 H 1.09004 * 109.47201 * 340.27461 * 7 6 5 9 9 N 1.46904 * 109.47535 * 220.28006 * 7 6 5 10 10 C 1.50702 * 109.47609 * 100.27276 * 7 6 5 11 11 H 1.08000 * 119.99054 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00259 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99828 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47156 * 60.00015 * 14 12 10 16 16 H 1.48504 * 109.46982 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47046 * 299.99928 * 14 12 10 18 18 C 1.38291 * 120.09845 * 0.55221 * 6 5 4 19 19 C 1.38269 * 120.15631 * 359.72748 * 18 6 5 20 20 C 1.38218 * 120.05936 * 359.97438 * 19 18 6 21 21 Cl 1.73597 * 120.04606 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 23 23 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 24 24 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 25 25 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 26 26 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 27 27 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 28 28 H 1.07995 * 120.02963 * 0.02562 * 5 4 2 29 29 H 1.00900 * 110.99823 * 176.04197 * 9 7 6 30 30 H 1.00903 * 110.99457 * 299.99828 * 9 7 6 31 31 H 0.96998 * 119.99907 * 180.02562 * 13 12 10 32 32 H 1.08003 * 119.92547 * 179.74555 * 18 6 5 33 33 H 1.07998 * 119.97412 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9698 -0.7287 -1.0823 5 6 1.6536 -0.3519 -2.3811 6 6 2.1548 -1.0707 -3.4486 7 6 1.8171 -0.6585 -4.8582 8 1 0.9260 -0.0308 -4.8496 9 7 1.5647 -1.8556 -5.6714 10 6 2.9700 0.1140 -5.4457 11 1 3.8585 0.2886 -4.8572 12 6 2.8903 0.5978 -6.7343 13 7 1.8080 0.3856 -7.4507 14 14 4.3197 1.5548 -7.4627 15 1 5.5332 0.6990 -7.4752 16 1 3.9868 1.9611 -8.8517 17 1 4.5756 2.7646 -6.6404 18 6 2.9616 -2.1716 -3.2258 19 6 3.2742 -2.5537 -1.9342 20 6 2.7811 -1.8353 -0.8612 21 17 3.1743 -2.3149 0.7602 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.4513 -0.9233 24 1 -0.3633 0.5740 0.8525 25 1 1.5899 1.9163 0.8525 26 1 3.0829 1.3431 0.0709 27 1 1.7045 1.8723 -0.9233 28 1 1.0204 0.5052 -2.5562 29 1 1.2733 -1.6043 -6.6042 30 1 2.3766 -2.4543 -5.6952 31 1 1.7521 0.7257 -8.3574 32 1 3.3487 -2.7342 -4.0625 33 1 3.9048 -3.4137 -1.7636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260495366.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:03 Heat of formation + Delta-G solvation = 20.216391 kcal Electronic energy + Delta-G solvation = -16643.719530 eV Core-core repulsion = 13922.880277 eV Total energy + Delta-G solvation = -2720.839253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56458 -36.65184 -36.03514 -34.31592 -31.58380 -29.88295 -28.93273 -27.43646 -26.00539 -24.28109 -22.96743 -21.35946 -19.47072 -16.81252 -16.59595 -15.55186 -15.43052 -14.87172 -14.85470 -14.25917 -13.61218 -13.34636 -13.05453 -12.57463 -12.45262 -12.17406 -12.05098 -11.72826 -11.57002 -11.47373 -11.11091 -10.91411 -10.78446 -10.69444 -10.26569 -10.05197 -9.80551 -8.75009 -8.38003 -8.31563 -7.88522 -7.28736 -6.18331 -4.36009 1.71712 1.81454 2.67288 3.18017 3.23598 3.26574 4.04102 4.14635 4.30912 5.03912 5.25866 5.30855 5.48741 5.59313 5.60800 5.70427 5.83175 5.87610 5.99354 6.02817 6.07877 6.31883 6.49404 6.70470 6.88476 7.00150 7.01647 7.15879 7.61606 7.62655 7.65556 7.98350 8.56177 8.82200 9.01158 9.36373 10.79178 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.006075 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.902723 B = 4608.254403 C = 4845.194824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.503 5.503 3 C 0.029 3.971 4 C 0.086 3.914 5 C -0.140 4.140 6 C -0.009 4.009 7 C 0.239 3.761 8 H 0.047 0.953 9 N -0.849 5.849 10 C -0.547 4.547 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 C -0.099 4.099 19 C -0.113 4.113 20 C -0.034 4.034 21 Cl -0.080 7.080 22 H 0.068 0.932 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.121 0.879 29 H 0.357 0.643 30 H 0.312 0.688 31 H 0.267 0.733 32 H 0.128 0.872 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -2.030 11.372 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.224 5.224 3 C -0.118 4.118 4 C -0.008 4.008 5 C -0.161 4.161 6 C -0.011 4.011 7 C 0.129 3.871 8 H 0.065 0.935 9 N -0.380 5.380 10 C -0.587 4.587 11 H 0.074 0.926 12 C -0.135 4.135 13 N -0.531 5.531 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.062 4.062 21 Cl -0.051 7.051 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.139 0.861 29 H 0.173 0.827 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.443 -2.397 12.314 12.553 hybrid contribution 1.343 1.401 -1.696 2.578 sum 0.900 -0.997 10.618 10.702 Atomic orbital electron populations 1.22425 0.86204 1.02505 1.00682 1.59627 1.08224 1.13927 1.40582 1.22424 1.00995 0.87648 1.00715 1.18412 0.98390 0.94826 0.89168 1.21392 1.02114 1.01022 0.91552 1.20470 0.91635 0.91784 0.97170 1.18018 0.95868 0.88763 0.84411 0.93543 1.59543 1.38441 1.19020 1.20953 1.21755 1.02332 1.35860 0.98737 0.92554 1.25012 0.96011 0.95474 0.96993 1.69730 1.26912 1.46054 1.10425 0.86556 0.82394 0.80427 0.78094 1.20105 1.21091 1.20125 1.20951 0.98163 0.97278 0.95398 1.20934 1.00805 0.99935 0.91508 1.20599 1.02655 0.97645 0.85265 1.98302 1.93019 1.91201 1.22567 0.91280 0.94866 0.91271 0.91274 0.91285 0.94784 0.86072 0.82689 0.87833 0.92274 0.85412 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.34 60.07 0.56 0.94 16 2 N -0.50 -7.56 4.39 -186.81 -0.82 -8.38 16 3 C 0.03 0.39 9.39 60.06 0.56 0.95 16 4 C 0.09 1.49 4.73 -83.73 -0.40 1.10 16 5 C -0.14 -2.67 8.19 -39.39 -0.32 -3.00 16 6 C -0.01 -0.19 4.89 -104.65 -0.51 -0.70 16 7 C 0.24 5.73 2.95 -70.01 -0.21 5.53 16 8 H 0.05 1.23 8.00 -51.93 -0.42 0.81 16 9 N -0.85 -19.47 9.02 -6.65 -0.06 -19.53 16 10 C -0.55 -14.21 8.70 -34.44 -0.30 -14.51 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.07 1.78 5.38 -17.82 -0.10 1.68 16 13 N -0.89 -23.90 11.54 55.43 0.64 -23.26 16 14 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 C -0.10 -1.86 9.28 -39.55 -0.37 -2.23 16 19 C -0.11 -1.89 9.82 -39.58 -0.39 -2.28 16 20 C -0.03 -0.58 6.34 -39.31 -0.25 -0.83 16 21 Cl -0.08 -1.21 28.44 -51.86 -1.47 -2.68 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.03 0.44 7.11 -51.93 -0.37 0.07 16 24 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 25 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.47 7.36 -51.93 -0.38 0.09 16 28 H 0.12 2.28 7.00 -52.49 -0.37 1.91 16 29 H 0.36 8.79 7.08 -39.29 -0.28 8.51 16 30 H 0.31 6.72 7.33 -39.29 -0.29 6.43 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.13 2.30 6.66 -52.48 -0.35 1.95 16 33 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -26.55 290.43 -8.17 -34.73 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -4.10 Total: 12.65 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.71 Total: -13.35 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.24 Total: -51.17 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.47 Total: -2.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.55 -8.17 -34.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495366.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.945 kcal (2) G-P(sol) polarization free energy of solvation -26.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds