Wall clock time and date at job start Mon Mar 30 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39757 * 110.99854 * 236.04653 * 2 1 3 5 5 C 1.38886 * 120.07629 * 59.72767 * 4 2 1 6 6 C 1.38109 * 119.93340 * 179.72109 * 5 4 2 7 7 C 1.50701 * 119.95313 * 180.27696 * 6 5 4 8 8 H 1.09004 * 109.47201 * 340.27461 * 7 6 5 9 9 N 1.46904 * 109.47535 * 220.28006 * 7 6 5 10 10 C 1.50702 * 109.47609 * 100.27276 * 7 6 5 11 11 H 1.08000 * 119.99054 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00259 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99828 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47156 * 60.00015 * 14 12 10 16 16 H 1.48504 * 109.46982 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47046 * 299.99928 * 14 12 10 18 18 C 1.38291 * 120.09845 * 0.55221 * 6 5 4 19 19 C 1.38269 * 120.15631 * 359.72748 * 18 6 5 20 20 C 1.38218 * 120.05936 * 359.97438 * 19 18 6 21 21 Cl 1.73597 * 120.04606 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 23 23 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 24 24 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 25 25 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 26 26 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 27 27 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 28 28 H 1.07995 * 120.02963 * 0.02562 * 5 4 2 29 29 H 1.00900 * 110.99823 * 176.04197 * 9 7 6 30 30 H 1.00903 * 110.99457 * 299.99828 * 9 7 6 31 31 H 0.96998 * 119.99907 * 180.02562 * 13 12 10 32 32 H 1.08003 * 119.92547 * 179.74555 * 18 6 5 33 33 H 1.07998 * 119.97412 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9698 -0.7287 -1.0823 5 6 1.6536 -0.3519 -2.3811 6 6 2.1548 -1.0707 -3.4486 7 6 1.8171 -0.6585 -4.8582 8 1 0.9260 -0.0308 -4.8496 9 7 1.5647 -1.8556 -5.6714 10 6 2.9700 0.1140 -5.4457 11 1 3.8585 0.2886 -4.8572 12 6 2.8903 0.5978 -6.7343 13 7 1.8080 0.3856 -7.4507 14 14 4.3197 1.5548 -7.4627 15 1 5.5332 0.6990 -7.4752 16 1 3.9868 1.9611 -8.8517 17 1 4.5756 2.7646 -6.6404 18 6 2.9616 -2.1716 -3.2258 19 6 3.2742 -2.5537 -1.9342 20 6 2.7811 -1.8353 -0.8612 21 17 3.1743 -2.3149 0.7602 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.4513 -0.9233 24 1 -0.3633 0.5740 0.8525 25 1 1.5899 1.9163 0.8525 26 1 3.0829 1.3431 0.0709 27 1 1.7045 1.8723 -0.9233 28 1 1.0204 0.5052 -2.5562 29 1 1.2733 -1.6043 -6.6042 30 1 2.3766 -2.4543 -5.6952 31 1 1.7521 0.7257 -8.3574 32 1 3.3487 -2.7342 -4.0625 33 1 3.9048 -3.4137 -1.7636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260495366.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:02 Heat of formation + Delta-G solvation = 4.109573 kcal Electronic energy + Delta-G solvation = -16644.417974 eV Core-core repulsion = 13922.880277 eV Total energy + Delta-G solvation = -2721.537697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93865 -38.05369 -37.34023 -36.02258 -33.45375 -31.36116 -30.40271 -28.49854 -27.95072 -25.53095 -24.68622 -22.75447 -20.99586 -18.60626 -18.21094 -17.03042 -16.85769 -16.52213 -16.01228 -15.93498 -14.96613 -14.87555 -14.63160 -14.11502 -13.94282 -13.52681 -13.28684 -13.22052 -13.07291 -12.82918 -12.63177 -12.62024 -12.36434 -12.24447 -11.81722 -11.61564 -11.54562 -10.74249 -9.77419 -9.55214 -9.38480 -9.15567 -8.15339 -6.42003 0.30772 0.37071 1.34309 1.36838 1.38128 1.45931 2.33212 2.75655 2.86892 3.02502 3.91588 4.06074 4.20959 4.38691 4.41744 4.44608 4.59699 4.62191 4.66764 4.77011 4.88214 4.95932 4.96979 5.16939 5.29729 5.43597 5.60961 5.72226 5.90335 5.91476 6.03704 6.30862 6.59694 6.87820 7.08728 7.34867 8.78629 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.006075 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.902723 B = 4608.254403 C = 4845.194824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.506 5.506 3 C 0.029 3.971 4 C 0.092 3.908 5 C -0.149 4.149 6 C -0.034 4.034 7 C 0.245 3.755 8 H 0.010 0.990 9 N -0.842 5.842 10 C -0.560 4.560 11 H 0.048 0.952 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 0.957 3.043 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.276 1.276 18 C -0.107 4.107 19 C -0.102 4.102 20 C -0.039 4.039 21 Cl -0.058 7.058 22 H 0.066 0.934 23 H 0.024 0.976 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.113 0.887 29 H 0.346 0.654 30 H 0.321 0.679 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -2.280 12.890 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.227 5.227 3 C -0.118 4.118 4 C -0.003 4.003 5 C -0.170 4.170 6 C -0.036 4.036 7 C 0.135 3.865 8 H 0.028 0.972 9 N -0.371 5.371 10 C -0.600 4.600 11 H 0.066 0.934 12 C -0.175 4.175 13 N -0.554 5.554 14 Si 0.782 3.218 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.202 1.202 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.067 4.067 21 Cl -0.029 7.029 22 H 0.085 0.915 23 H 0.043 0.957 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.131 0.869 29 H 0.161 0.839 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.475 -2.656 13.852 14.112 hybrid contribution 1.028 1.464 -2.053 2.723 sum 1.503 -1.192 11.798 11.953 Atomic orbital electron populations 1.22499 0.84989 1.02857 1.01503 1.59774 1.09322 1.14565 1.39034 1.22485 1.00859 0.86969 1.01456 1.18517 0.97795 0.94950 0.88988 1.21356 1.02468 1.00915 0.92257 1.20269 0.93890 0.93665 0.95757 1.17789 0.93694 0.88460 0.86598 0.97222 1.59497 1.38809 1.18731 1.20041 1.21966 1.02624 1.36358 0.99036 0.93409 1.25705 0.98176 0.96271 0.97358 1.69828 1.28267 1.46665 1.10614 0.85635 0.79740 0.79066 0.77354 1.19553 1.20608 1.20154 1.20990 0.98152 0.96783 0.96652 1.21173 1.00194 1.00320 0.90417 1.20784 1.02053 0.97336 0.86497 1.98310 1.92774 1.90924 1.20870 0.91503 0.95714 0.88483 0.88400 0.91757 0.95860 0.86893 0.83924 0.86898 0.92196 0.85079 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.34 127.69 1.19 1.88 16 2 N -0.51 -14.33 4.39 -744.93 -3.27 -17.60 16 3 C 0.03 0.73 9.39 127.69 1.20 1.92 16 4 C 0.09 3.09 4.73 38.21 0.18 3.27 16 5 C -0.15 -5.76 8.19 22.39 0.18 -5.58 16 6 C -0.03 -1.45 4.89 -19.88 -0.10 -1.55 16 7 C 0.24 12.10 2.95 43.42 0.13 12.23 16 8 H 0.01 0.55 8.00 -2.38 -0.02 0.53 16 9 N -0.84 -39.43 9.02 -174.94 -1.58 -41.00 16 10 C -0.56 -29.65 8.70 25.60 0.22 -29.43 16 11 H 0.05 2.56 7.74 -2.91 -0.02 2.53 16 12 C 0.03 1.35 5.38 84.65 0.46 1.80 16 13 N -0.91 -49.72 11.54 21.45 0.25 -49.48 16 14 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 C -0.11 -3.95 9.28 22.29 0.21 -3.75 16 19 C -0.10 -3.22 9.82 22.27 0.22 -3.00 16 20 C -0.04 -1.25 6.34 22.44 0.14 -1.11 16 21 Cl -0.06 -1.59 28.44 -2.72 -0.08 -1.67 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 23 H 0.02 0.64 7.11 -2.39 -0.02 0.63 16 24 H 0.10 1.82 8.12 -2.38 -0.02 1.80 16 25 H 0.10 1.89 8.12 -2.38 -0.02 1.87 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.02 0.63 7.36 -2.39 -0.02 0.61 16 28 H 0.11 4.43 7.00 -2.91 -0.02 4.41 16 29 H 0.35 17.50 7.08 -89.69 -0.64 16.86 16 30 H 0.32 13.95 7.33 -89.69 -0.66 13.29 16 31 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.13 4.65 6.66 -2.91 -0.02 4.63 16 33 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -56.31 290.43 1.22 -55.08 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.16 Total: 33.91 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 4.03 Total: -23.30 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.60 Total: -108.08 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -56.31 1.22 -55.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260495366.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.194 kcal (2) G-P(sol) polarization free energy of solvation -56.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds