Wall clock time and date at job start Mon Mar 30 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36055 * 116.99750 * 2 1 4 4 C 1.38763 * 120.07951 * 90.00140 * 3 2 1 5 5 F 1.35099 * 120.01717 * 0.03715 * 4 3 2 6 6 C 1.38407 * 119.96154 * 180.02562 * 4 3 2 7 7 C 1.38267 * 120.11985 * 359.97387 * 6 4 3 8 8 C 1.50702 * 119.91983 * 180.02562 * 7 6 4 9 9 C 1.38220 * 120.15883 * 0.29578 * 7 6 4 10 10 C 1.50699 * 119.97847 * 179.72890 * 9 7 6 11 11 H 1.09007 * 109.47245 * 5.80539 * 10 9 7 12 12 C 1.52999 * 109.46810 * 245.80603 * 10 9 7 13 13 C 1.50695 * 109.47250 * 125.80698 * 10 9 7 14 14 H 1.08005 * 119.99854 * 0.02562 * 13 10 9 15 15 C 1.37881 * 120.00075 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99844 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99845 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47323 * 60.00697 * 17 15 13 19 19 H 1.48502 * 109.47160 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47512 * 300.00673 * 17 15 13 21 21 C 1.38628 * 120.03628 * 359.45710 * 9 7 6 22 22 O 1.35993 * 120.05571 * 180.27588 * 21 9 7 23 23 H 1.09004 * 109.47384 * 300.00520 * 1 2 3 24 24 H 1.09004 * 109.46751 * 60.00053 * 1 2 3 25 25 H 1.08996 * 109.47525 * 179.97438 * 1 2 3 26 26 H 1.08006 * 119.94151 * 179.97438 * 6 4 3 27 27 H 1.08997 * 109.47673 * 95.70904 * 8 7 6 28 28 H 1.09006 * 109.46766 * 335.70948 * 8 7 6 29 29 H 1.08999 * 109.47019 * 215.71184 * 8 7 6 30 30 H 1.09004 * 109.47078 * 179.97438 * 12 10 9 31 31 H 1.08998 * 109.47834 * 300.00418 * 12 10 9 32 32 H 1.09007 * 109.47328 * 60.00052 * 12 10 9 33 33 H 0.97000 * 119.99879 * 180.02562 * 16 15 13 34 34 H 0.96699 * 113.99948 * 270.23911 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 2.3624 1.8320 1.2008 5 9 2.0573 1.2315 2.3719 6 6 2.9902 3.0654 1.1979 7 6 3.3040 3.6815 0.0005 8 6 3.9881 5.0243 0.0027 9 6 2.9868 3.0713 -1.1984 10 6 3.3252 3.7492 -2.5011 11 1 3.9028 4.6519 -2.3017 12 6 2.0341 4.1211 -3.2329 13 6 4.1368 2.8128 -3.3587 14 1 4.3825 1.8253 -2.9968 15 6 4.5647 3.2163 -4.6058 16 7 4.2650 4.4185 -5.0466 17 14 5.5712 2.0557 -5.6685 18 1 4.7851 0.8254 -5.9398 19 1 5.9047 2.7237 -6.9522 20 1 6.8246 1.6956 -4.9582 21 6 2.3626 1.8335 -1.2033 22 8 2.0553 1.2302 -2.3827 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.2354 3.5477 2.1327 27 1 5.0642 4.8841 -0.0991 28 1 3.7757 5.5387 0.9399 29 1 3.6191 5.6214 -0.8312 30 1 2.2788 4.6119 -4.1749 31 1 1.4564 3.2186 -3.4323 32 1 1.4470 4.7985 -2.6126 33 1 4.5657 4.7022 -5.9241 34 1 1.1791 1.4563 -2.7236 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260553866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:11 Heat of formation + Delta-G solvation = -106.391765 kcal Electronic energy + Delta-G solvation = -19466.400496 eV Core-core repulsion = 16279.441975 eV Total energy + Delta-G solvation = -3186.958521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.54099 -39.93590 -37.62261 -36.18274 -34.08298 -31.58190 -30.61814 -28.14766 -27.42315 -25.41536 -25.10539 -22.76481 -21.36358 -19.89628 -17.81413 -17.22806 -16.98235 -16.08108 -15.99431 -15.43240 -14.73854 -14.60265 -14.14042 -13.93547 -13.57004 -13.34866 -13.10688 -12.49817 -12.35592 -11.97263 -11.68546 -11.51927 -11.27887 -11.03927 -10.85463 -10.64259 -10.49422 -10.31462 -10.06327 -9.86911 -9.30019 -8.89761 -8.32211 -8.11679 -7.76375 -5.98431 -4.00841 1.40444 1.59210 3.36643 3.39568 3.45353 3.67584 4.03981 4.35296 4.48788 4.89459 5.21286 5.32429 5.33770 5.36830 5.48821 5.59980 5.70032 5.79564 5.95687 6.09410 6.20126 6.45807 6.49599 6.62348 6.69064 6.82540 6.97378 7.10446 7.20729 7.58986 7.69214 7.86790 8.06933 8.30706 8.41862 9.01091 9.61984 11.07918 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.007714 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.725952 B = 3628.771770 C = 4201.072073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C 0.017 3.983 4 C 0.069 3.931 5 F -0.142 7.142 6 C -0.156 4.156 7 C -0.060 4.060 8 C -0.110 4.110 9 C -0.059 4.059 10 C 0.074 3.926 11 H 0.047 0.953 12 C -0.134 4.134 13 C -0.486 4.486 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.133 3.867 22 O -0.457 6.457 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.007 0.993 33 H 0.260 0.740 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 -1.155 9.200 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.237 6.237 3 C -0.028 4.028 4 C 0.049 3.951 5 F -0.121 7.121 6 C -0.175 4.175 7 C -0.061 4.061 8 C -0.167 4.167 9 C -0.060 4.060 10 C 0.056 3.944 11 H 0.065 0.935 12 C -0.192 4.192 13 C -0.525 4.525 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.087 3.913 22 O -0.266 6.266 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.110 0.890 26 H 0.150 0.850 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.055 -1.498 9.129 11.057 hybrid contribution -0.178 -0.540 -0.428 0.712 sum -6.233 -2.038 8.701 10.896 Atomic orbital electron populations 1.22951 0.79949 1.02910 1.00219 1.86148 1.19285 1.24066 1.94242 1.19050 1.03288 0.89101 0.91362 1.17694 1.04148 0.93016 0.80223 1.91428 1.91573 1.83409 1.45662 1.20837 1.03106 0.94358 0.99213 1.19622 0.97984 0.97249 0.91200 1.20809 1.00631 0.92892 1.02348 1.21016 0.94646 0.92668 0.97636 1.17931 0.94338 0.95815 0.86316 0.93488 1.21797 0.96439 0.98361 1.02602 1.21032 1.31478 0.99840 1.00108 0.92137 1.24898 0.96322 0.95143 0.97735 1.69852 1.46613 1.17981 1.19270 0.86630 0.80683 0.81111 0.79434 1.20228 1.21531 1.20431 1.18302 0.98321 0.90381 0.84309 1.85035 1.38115 1.69178 1.34242 0.93949 0.93773 0.88991 0.84999 0.90651 0.92297 0.90099 0.89132 0.95473 0.97413 0.93050 0.76802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.13 101.05 1.13 1.58 16 2 O -0.32 -5.81 10.07 -34.46 -0.35 -6.15 16 3 C 0.02 0.32 5.74 -39.09 -0.22 0.10 16 4 C 0.07 1.23 7.31 -39.33 -0.29 0.94 16 5 F -0.14 -2.46 17.11 2.25 0.04 -2.42 16 6 C -0.16 -2.57 9.65 -39.51 -0.38 -2.95 16 7 C -0.06 -1.08 5.88 -104.62 -0.62 -1.70 16 8 C -0.11 -1.70 9.14 36.01 0.33 -1.38 16 9 C -0.06 -1.22 4.76 -104.49 -0.50 -1.72 16 10 C 0.07 1.74 2.10 -92.93 -0.20 1.54 16 11 H 0.05 1.15 5.71 -51.93 -0.30 0.85 16 12 C -0.13 -2.98 8.81 37.16 0.33 -2.66 16 13 C -0.49 -12.96 7.30 -34.44 -0.25 -13.21 16 14 H 0.06 1.70 7.08 -52.48 -0.37 1.33 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 16 N -0.90 -24.70 11.32 55.43 0.63 -24.07 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.13 2.70 6.14 -39.14 -0.24 2.45 16 22 O -0.46 -9.31 10.57 -34.26 -0.36 -9.68 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 29 H 0.08 1.32 6.52 -51.93 -0.34 0.98 16 30 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 31 H 0.03 0.55 5.87 -51.93 -0.31 0.25 16 32 H 0.01 0.14 8.14 -51.92 -0.42 -0.28 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.38 6.10 7.74 45.56 0.35 6.46 16 LS Contribution 287.31 15.07 4.33 4.33 Total: -1.00 -29.74 287.31 -5.10 -34.85 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.36 Total: 2.13 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.01 Total: -15.49 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.63 Total: -24.07 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.71 Total: -15.83 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.74 -5.10 -34.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.546 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds