Wall clock time and date at job start Mon Mar 30 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36051 * 116.99897 * 2 1 4 4 C 1.38753 * 120.08189 * 269.97796 * 3 2 1 5 5 F 1.35100 * 120.02191 * 0.04788 * 4 3 2 6 6 C 1.38419 * 119.96105 * 180.02562 * 4 3 2 7 7 C 1.38264 * 120.11918 * 359.73206 * 6 4 3 8 8 C 1.50691 * 119.92330 * 180.27107 * 7 6 4 9 9 C 1.38223 * 120.15556 * 0.54813 * 7 6 4 10 10 C 1.50708 * 119.97774 * 179.72471 * 9 7 6 11 11 H 1.09000 * 109.47014 * 355.85024 * 10 9 7 12 12 C 1.53005 * 109.47046 * 115.84511 * 10 9 7 13 13 C 1.50694 * 109.47042 * 235.84431 * 10 9 7 14 14 H 1.08005 * 119.99947 * 354.00647 * 13 10 9 15 15 C 1.37882 * 120.00086 * 174.00642 * 13 10 9 16 16 N 1.31509 * 119.99906 * 156.14636 * 15 13 10 17 17 Si 1.86795 * 119.99573 * 335.86516 * 15 13 10 18 18 H 1.48506 * 109.46996 * 180.27491 * 17 15 13 19 19 H 1.48502 * 109.47570 * 300.27738 * 17 15 13 20 20 H 1.48499 * 109.47301 * 60.28011 * 17 15 13 21 21 C 1.38620 * 120.03993 * 359.44845 * 9 7 6 22 22 O 1.35996 * 120.06151 * 180.25003 * 21 9 7 23 23 H 1.09000 * 109.47301 * 59.99901 * 1 2 3 24 24 H 1.09004 * 109.46749 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46852 * 299.99653 * 1 2 3 26 26 H 1.07997 * 119.94056 * 180.02562 * 6 4 3 27 27 H 1.09007 * 109.47362 * 264.25436 * 8 7 6 28 28 H 1.08997 * 109.47054 * 24.25693 * 8 7 6 29 29 H 1.09001 * 109.47684 * 144.25630 * 8 7 6 30 30 H 1.09001 * 109.46907 * 64.32211 * 12 10 9 31 31 H 1.09000 * 109.46872 * 184.32371 * 12 10 9 32 32 H 1.09007 * 109.47071 * 304.32516 * 12 10 9 33 33 H 0.96998 * 120.00509 * 354.62013 * 16 15 13 34 34 H 0.96708 * 113.99783 * 90.00449 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2122 0.0000 4 6 2.3628 1.8317 -1.2006 5 9 2.0566 1.2320 -2.3719 6 6 2.9916 3.0648 -1.1977 7 6 3.3005 3.6833 -0.0003 8 6 3.9797 5.0284 -0.0023 9 6 2.9931 3.0679 1.1986 10 6 3.3372 3.7428 2.5014 11 1 3.8848 4.6636 2.3001 12 6 2.0504 4.0707 3.2614 13 6 4.1915 2.8220 3.3339 14 1 4.3784 1.8114 3.0017 15 6 4.7345 3.2694 4.5196 16 7 5.0637 2.4090 5.4582 17 14 5.0099 5.0971 4.7897 18 1 5.6066 5.3148 6.1321 19 1 5.9312 5.6183 3.7481 20 1 3.7109 5.8115 4.7038 21 6 2.3632 1.8331 1.2033 22 8 2.0559 1.2296 2.3827 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.2372 3.5469 -2.1324 27 1 5.0561 4.8923 0.1026 28 1 3.7680 5.5409 -0.9407 29 1 3.6062 5.6253 0.8298 30 1 1.5411 3.1451 3.5299 31 1 2.2946 4.6267 4.1666 32 1 1.3986 4.6738 2.6292 33 1 4.8534 1.4684 5.3493 34 1 1.1800 1.4565 2.7241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:14 Heat of formation + Delta-G solvation = -127.208735 kcal Electronic energy + Delta-G solvation = -19512.781904 eV Core-core repulsion = 16324.920691 eV Total energy + Delta-G solvation = -3187.861212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.96329 -41.45970 -39.07162 -37.76374 -35.94238 -33.59040 -32.35124 -29.93973 -28.70731 -26.77521 -26.63046 -24.34265 -22.84855 -21.36153 -19.63103 -19.34599 -18.49331 -18.25952 -17.43160 -16.93508 -16.09483 -15.91332 -15.60120 -15.36617 -15.19187 -15.10105 -14.50757 -14.18118 -13.96840 -13.82243 -13.26012 -13.15611 -13.05651 -12.62249 -12.33765 -12.25926 -12.02522 -11.95367 -11.59518 -11.50757 -11.04760 -10.74966 -10.23551 -9.56950 -9.39373 -8.58968 -6.17122 -0.04612 0.09568 1.51143 1.59110 1.76882 2.28034 2.59033 2.61493 2.89202 3.13273 3.45280 3.83161 3.95398 4.15483 4.32479 4.33343 4.41518 4.57277 4.63609 4.68881 4.74381 4.82775 4.87440 4.95650 5.08539 5.10908 5.20800 5.40380 5.48301 5.67566 5.77791 6.13991 6.21098 6.27612 6.74272 6.86132 7.54929 8.72988 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.007884 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.632244 B = 3550.698606 C = 4195.166118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.010 3.990 4 C 0.067 3.933 5 F -0.137 7.137 6 C -0.140 4.140 7 C -0.060 4.060 8 C -0.114 4.114 9 C -0.081 4.081 10 C 0.052 3.948 11 H 0.052 0.948 12 C -0.142 4.142 13 C -0.572 4.572 14 H 0.010 0.990 15 C -0.021 4.021 16 N -0.939 5.939 17 Si 1.073 2.927 18 H -0.297 1.297 19 H -0.260 1.260 20 H -0.240 1.240 21 C 0.113 3.887 22 O -0.480 6.480 23 H 0.053 0.947 24 H 0.116 0.884 25 H 0.052 0.948 26 H 0.173 0.827 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.249 0.751 34 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 5.711 -13.081 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.035 4.035 4 C 0.047 3.953 5 F -0.116 7.116 6 C -0.158 4.158 7 C -0.060 4.060 8 C -0.170 4.170 9 C -0.082 4.082 10 C 0.033 3.967 11 H 0.069 0.931 12 C -0.199 4.199 13 C -0.610 4.610 14 H 0.029 0.971 15 C -0.218 4.218 16 N -0.575 5.575 17 Si 0.894 3.106 18 H -0.224 1.224 19 H -0.185 1.185 20 H -0.164 1.164 21 C 0.068 3.932 22 O -0.291 6.291 23 H 0.072 0.928 24 H 0.134 0.866 25 H 0.071 0.929 26 H 0.190 0.810 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.544 6.336 -12.122 16.127 hybrid contribution -1.104 -2.032 -0.703 2.417 sum -9.648 4.304 -12.824 16.615 Atomic orbital electron populations 1.23240 0.77291 1.04940 1.01141 1.86094 1.21968 1.23941 1.94363 1.19131 1.03621 0.89246 0.91472 1.17863 1.03961 0.93570 0.79895 1.91443 1.91478 1.83516 1.45171 1.21171 1.01028 0.93323 1.00287 1.19914 0.97356 0.98311 0.90424 1.20933 1.00231 0.91284 1.04577 1.20623 0.97002 0.93417 0.97152 1.18092 0.94274 0.95522 0.88817 0.93069 1.22091 0.97873 1.00127 0.99857 1.21890 1.34129 0.97927 1.07014 0.97115 1.27133 0.93499 1.09487 0.91682 1.70957 1.48781 1.04072 1.33697 0.83730 0.79116 0.71456 0.76305 1.22407 1.18508 1.16448 1.18476 0.99324 0.90934 0.84489 1.85046 1.39239 1.69740 1.35067 0.92828 0.86595 0.92924 0.80986 0.90670 0.88121 0.90450 0.93895 0.93562 0.92499 0.94223 0.75476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.13 113.37 1.26 1.94 16 2 O -0.35 -12.48 10.07 -80.22 -0.81 -13.28 16 3 C 0.01 0.39 5.74 22.59 0.13 0.52 16 4 C 0.07 2.22 7.31 22.44 0.16 2.38 16 5 F -0.14 -4.38 17.11 44.97 0.77 -3.61 16 6 C -0.14 -3.99 9.65 22.32 0.22 -3.78 16 7 C -0.06 -1.90 5.88 -19.86 -0.12 -2.02 16 8 C -0.11 -2.83 9.14 71.23 0.65 -2.18 16 9 C -0.08 -3.20 4.77 -19.77 -0.09 -3.30 16 10 C 0.05 2.24 1.72 -12.28 -0.02 2.22 16 11 H 0.05 2.08 4.22 -2.39 -0.01 2.07 16 12 C -0.14 -5.48 8.68 71.98 0.62 -4.85 16 13 C -0.57 -31.80 7.67 25.60 0.20 -31.60 16 14 H 0.01 0.69 7.25 -2.91 -0.02 0.67 16 15 C -0.02 -1.17 5.27 84.66 0.45 -0.73 16 16 N -0.94 -59.35 13.69 21.45 0.29 -59.06 16 17 Si 1.07 47.63 26.58 68.60 1.82 49.46 16 18 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 20 H -0.24 -9.18 5.97 99.48 0.59 -8.59 16 21 C 0.11 4.61 6.15 22.56 0.14 4.75 16 22 O -0.48 -20.59 10.53 -79.60 -0.84 -21.42 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 27 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.10 1.72 8.04 -2.39 -0.02 1.70 16 29 H 0.08 1.93 6.52 -2.39 -0.02 1.91 16 30 H 0.04 1.65 5.82 -2.39 -0.01 1.64 16 31 H 0.05 1.83 5.54 -2.39 -0.01 1.82 16 32 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 34 H 0.39 13.00 7.76 -74.05 -0.57 12.43 16 Total: -1.00 -71.68 283.92 5.25 -66.43 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.41 Total: 18.13 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.60 Total: -36.64 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.29 Total: -59.06 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.65 Total: -34.71 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.77 Total: -3.61 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.82 Total: 49.46 kcal Total: -71.68 5.25 -66.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.777 kcal (2) G-P(sol) polarization free energy of solvation -71.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds