Wall clock time and date at job start Mon Mar 30 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99773 * 2 1 4 4 H 1.48500 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47223 * 299.99787 * 3 2 1 6 6 H 1.48503 * 109.46737 * 60.00025 * 3 2 1 7 7 C 1.37881 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99847 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.01722 * 58.60895 * 9 7 2 11 11 C 1.54266 * 110.03348 * 297.17291 * 9 7 2 12 12 C 1.54896 * 104.19478 * 217.10343 * 11 9 7 13 13 C 1.54891 * 102.74569 * 37.94099 * 12 11 9 14 14 C 1.53871 * 110.03486 * 180.02562 * 9 7 2 15 15 H 1.08997 * 110.03503 * 238.62526 * 14 9 7 16 16 C 1.53006 * 110.02811 * 0.02562 * 14 9 7 17 17 C 1.52999 * 109.46626 * 184.99578 * 16 14 9 18 18 H 1.09002 * 109.47016 * 55.00506 * 17 16 14 19 19 F 1.39891 * 109.47627 * 294.99938 * 17 16 14 20 20 C 1.53004 * 109.46978 * 174.99863 * 17 16 14 21 21 F 1.39901 * 109.47066 * 60.00242 * 20 17 16 22 22 F 1.39891 * 109.47266 * 180.02562 * 20 17 16 23 23 F 1.39906 * 109.47247 * 300.00639 * 20 17 16 24 24 H 0.97000 * 120.00140 * 0.02562 * 1 2 3 25 25 H 1.09000 * 110.48775 * 335.77990 * 11 9 7 26 26 H 1.08996 * 110.48639 * 98.29339 * 11 9 7 27 27 H 1.08991 * 110.75471 * 156.25451 * 12 11 9 28 28 H 1.08998 * 110.75368 * 279.62895 * 12 11 9 29 29 H 1.09001 * 110.48478 * 203.38031 * 13 12 11 30 30 H 1.08996 * 110.49048 * 80.73871 * 13 12 11 31 31 H 1.08993 * 109.46955 * 305.00050 * 16 14 9 32 32 H 1.09000 * 109.47050 * 64.99879 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0017 10 1 0.6023 -2.5562 -0.8723 11 6 0.4142 -2.6251 1.2915 12 6 0.5058 -4.1271 1.6586 13 6 1.9689 -4.4798 1.2922 14 6 2.2395 -3.6785 0.0028 15 1 2.0708 -4.3079 -0.8710 16 6 3.6779 -3.1567 0.0029 17 6 4.6473 -4.3338 -0.1216 18 1 4.3971 -4.9184 -1.0070 19 9 4.5470 -5.1429 1.0151 20 6 6.0777 -3.8054 -0.2469 21 9 6.3989 -3.0551 0.8894 22 9 6.9641 -4.8816 -0.3614 23 9 6.1781 -2.9961 -1.3838 24 1 -0.4850 0.8400 -0.0004 25 1 0.8414 -2.0117 2.0848 26 1 -0.6206 -2.3385 1.1042 27 1 0.3277 -4.2760 2.7235 28 1 -0.1937 -4.7136 1.0630 29 1 2.0680 -5.5491 1.1050 30 1 2.6471 -4.1661 2.0856 31 1 3.8187 -2.4792 -0.8392 32 1 3.8710 -2.6239 0.9341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260796674.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:53 Heat of formation + Delta-G solvation = -236.824816 kcal Electronic energy + Delta-G solvation = -20079.176244 eV Core-core repulsion = 16344.704982 eV Total energy + Delta-G solvation = -3734.471263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 254.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.29804 -49.14105 -48.71485 -48.46403 -39.39533 -34.52699 -34.00834 -30.28125 -29.49600 -26.06153 -25.65913 -23.16231 -21.33499 -20.55654 -19.74859 -19.51272 -18.99199 -17.87027 -17.33358 -16.60150 -16.22641 -15.66330 -15.51692 -15.47626 -15.26266 -15.15282 -15.09520 -14.84389 -14.82915 -14.30463 -14.04975 -13.38725 -13.30274 -13.06107 -12.84560 -12.34162 -12.17225 -11.75326 -11.51931 -11.46394 -11.29939 -11.24452 -10.91321 -10.50109 -10.40419 -8.06652 -6.13001 1.39704 1.43958 1.47574 1.52528 2.46048 2.51145 2.81092 2.87971 3.26122 3.53503 3.71131 3.88681 4.12077 4.18273 4.27325 4.66804 4.80355 4.88606 5.07179 5.08768 5.18041 5.21308 5.35091 5.43511 5.51384 5.72247 5.77446 5.97541 6.04692 6.44822 6.99452 7.54656 9.03022 Molecular weight = 254.10amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.008644 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.080697 B = 3238.525011 C = 4289.802964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.525 4.525 8 H 0.079 0.921 9 C 0.041 3.959 10 H -0.002 1.002 11 C -0.089 4.089 12 C -0.125 4.125 13 C -0.106 4.106 14 C -0.077 4.077 15 H 0.075 0.925 16 C -0.124 4.124 17 C 0.061 3.939 18 H 0.157 0.843 19 F -0.184 7.184 20 C 0.431 3.569 21 F -0.184 7.184 22 F -0.178 7.178 23 F -0.174 7.174 24 H 0.255 0.745 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.320 -10.126 -0.513 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.563 4.563 8 H 0.097 0.903 9 C 0.023 3.977 10 H 0.016 0.984 11 C -0.128 4.128 12 C -0.163 4.163 13 C -0.143 4.143 14 C -0.095 4.095 15 H 0.093 0.907 16 C -0.161 4.161 17 C 0.024 3.976 18 H 0.175 0.825 19 F -0.164 7.164 20 C 0.377 3.623 21 F -0.166 7.166 22 F -0.160 7.160 23 F -0.155 7.155 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.222 -10.013 -0.489 13.622 hybrid contribution 0.277 1.490 0.090 1.518 sum 9.499 -8.523 -0.400 12.769 Atomic orbital electron populations 1.70122 1.07240 1.26625 1.52277 1.25727 0.95424 1.02110 0.95564 0.85796 0.79635 0.80920 0.77116 1.18663 1.21151 1.21494 1.22055 0.94101 0.91306 1.48880 0.90344 1.19266 0.92691 0.92509 0.93240 0.98417 1.22106 0.98323 0.94104 0.98253 1.22569 0.97291 0.96148 1.00253 1.22415 0.95818 0.99332 0.96763 1.21680 0.92980 0.96688 0.98194 0.90691 1.22361 0.94320 0.94593 1.04867 1.23113 0.89438 0.94826 0.90245 0.82527 1.92891 1.96253 1.74195 1.53069 1.21303 0.90810 0.76241 0.73983 1.93198 1.94148 1.77553 1.51703 1.93199 1.71864 1.55198 1.95714 1.93212 1.96718 1.74180 1.51385 0.93577 0.95467 0.95583 0.91897 0.91707 0.90456 0.92354 0.88680 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.23 12.43 21.45 0.27 -52.97 16 2 C 0.01 0.54 5.33 84.65 0.45 0.99 16 3 Si 0.94 43.12 29.54 68.60 2.03 45.14 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.53 -26.88 7.50 25.60 0.19 -26.69 16 8 H 0.08 3.79 4.66 -2.91 -0.01 3.78 16 9 C 0.04 1.93 2.82 -10.82 -0.03 1.90 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 11 C -0.09 -4.11 5.44 31.67 0.17 -3.94 16 12 C -0.13 -4.38 6.91 31.89 0.22 -4.16 16 13 C -0.11 -3.39 4.82 31.65 0.15 -3.24 16 14 C -0.08 -2.72 2.93 -10.09 -0.03 -2.75 16 15 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.12 -4.05 2.68 30.60 0.08 -3.97 16 17 C 0.06 1.54 3.29 30.60 0.10 1.64 16 18 H 0.16 2.91 8.14 -2.39 -0.02 2.90 16 19 F -0.18 -4.97 14.76 44.97 0.66 -4.31 16 20 C 0.43 11.35 2.91 71.98 0.21 11.56 16 21 F -0.18 -5.53 16.87 44.97 0.76 -4.77 16 22 F -0.18 -4.45 17.30 44.97 0.78 -3.67 16 23 F -0.17 -4.71 16.71 44.97 0.75 -3.96 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 26 H 0.03 1.29 7.97 -2.39 -0.02 1.28 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 30 H 0.06 1.93 7.25 -2.39 -0.02 1.91 16 31 H 0.09 3.29 6.27 -2.39 -0.01 3.27 16 32 H 0.07 2.67 7.11 -2.39 -0.02 2.66 16 Total: -1.00 -58.01 271.62 7.90 -50.11 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.13 Total: 3.07 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 1.52 Total: -28.65 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.27 Total: -52.97 kcal Atomic # 9 Polarization: -19.66 SS G_CDS: 2.95 Total: -16.71 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -58.01 7.90 -50.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260796674.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.717 kcal (2) G-P(sol) polarization free energy of solvation -58.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds