Wall clock time and date at job start Mon Mar 30 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30812 * 125.70417 * 2 1 4 4 C 1.34464 * 109.33651 * 179.81404 * 3 2 1 5 5 Cl 1.73600 * 126.10945 * 180.13094 * 4 3 2 6 6 C 1.33939 * 107.78002 * 0.38667 * 4 3 2 7 7 N 1.34375 * 125.71483 * 180.30242 * 2 1 3 8 8 C 1.46469 * 128.46519 * 0.16120 * 7 2 1 9 9 H 1.09003 * 109.59981 * 282.57764 * 8 7 2 10 10 C 1.52998 * 109.60089 * 42.89651 * 8 7 2 11 11 C 1.50707 * 109.47269 * 182.43475 * 10 8 7 12 12 H 1.08000 * 119.99266 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00411 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00480 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99968 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47093 * 89.99847 * 15 13 11 17 17 H 1.48496 * 109.47301 * 209.99698 * 15 13 11 18 18 H 1.48501 * 109.47036 * 330.00093 * 15 13 11 19 19 C 1.53281 * 108.68820 * 162.65592 * 8 7 2 20 20 C 1.53117 * 109.70815 * 50.79184 * 19 8 7 21 21 C 1.50702 * 128.71248 * 179.90491 * 6 4 3 22 22 H 1.09000 * 109.46858 * 238.09373 * 1 2 3 23 23 H 1.08999 * 109.46631 * 118.10274 * 1 2 3 24 24 H 1.09003 * 109.47554 * 358.10249 * 1 2 3 25 25 H 1.09003 * 109.47671 * 302.43324 * 10 8 7 26 26 H 1.09003 * 109.47492 * 62.43542 * 10 8 7 27 27 H 0.96991 * 120.00078 * 179.97438 * 14 13 11 28 28 H 1.08998 * 109.43410 * 170.86466 * 19 8 7 29 29 H 1.09000 * 109.43348 * 290.77342 * 19 8 7 30 30 H 1.09001 * 109.49871 * 50.00311 * 20 19 8 31 31 H 1.09002 * 109.50070 * 170.09522 * 20 19 8 32 32 H 1.09004 * 109.74789 * 44.58338 * 21 6 4 33 33 H 1.09008 * 109.78429 * 283.89241 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0622 0.0000 4 6 3.5606 0.6833 0.0041 5 17 4.9374 1.7407 0.0089 6 6 3.5936 -0.6556 -0.0019 7 7 2.2914 -1.0910 -0.0058 8 6 1.8921 -2.5002 -0.0164 9 1 1.5750 -2.7980 0.9830 10 6 0.7386 -2.6993 -1.0015 11 6 0.2905 -4.1378 -0.9663 12 1 0.7794 -4.8396 -0.3068 13 6 -0.7442 -4.5577 -1.7750 14 7 -1.1355 -5.8129 -1.7439 15 14 -1.5902 -3.3436 -2.9151 16 1 -0.8976 -3.3328 -4.2287 17 1 -3.0064 -3.7478 -3.1056 18 1 -1.5392 -1.9852 -2.3174 19 6 3.0927 -3.3476 -0.4524 20 6 4.3187 -2.9761 0.3863 21 6 4.7924 -1.5689 -0.0026 22 1 -0.3633 -0.5432 0.8724 23 1 -0.3632 -0.4841 -0.9065 24 1 -0.3634 1.0271 0.0340 25 1 -0.0934 -2.0528 -0.7224 26 1 1.0726 -2.4475 -2.0081 27 1 -1.8636 -6.1081 -2.3126 28 1 2.8623 -4.4033 -0.3099 29 1 3.3047 -3.1615 -1.5053 30 1 4.0545 -2.9918 1.4437 31 1 5.1180 -3.6935 0.1999 32 1 5.5261 -1.2141 0.7213 33 1 5.2380 -1.5920 -0.9971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260948747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:51 Heat of formation + Delta-G solvation = 19.353914 kcal Electronic energy + Delta-G solvation = -17089.284843 eV Core-core repulsion = 14368.408191 eV Total energy + Delta-G solvation = -2720.876653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.53054 -38.25505 -37.48393 -35.61881 -34.28192 -32.31206 -31.48571 -29.88041 -26.92373 -25.49487 -23.25562 -22.79669 -21.50462 -20.06897 -19.01619 -17.65938 -16.95458 -16.23412 -15.80287 -15.60841 -15.29658 -15.10560 -14.86695 -14.41910 -14.17608 -13.90812 -13.56637 -13.26351 -13.13446 -12.76393 -12.59969 -12.26011 -12.16969 -12.03466 -11.92832 -11.84679 -11.51768 -11.18187 -11.02776 -10.76917 -10.44706 -9.16480 -8.30673 -6.34822 0.89197 0.93737 1.34194 1.37760 1.45325 1.79764 1.89190 2.32788 3.04685 3.49457 3.60649 3.71158 3.79748 3.91076 4.12194 4.25789 4.46800 4.55114 4.58670 4.69835 4.80439 4.85204 4.86621 5.04349 5.07834 5.15081 5.20018 5.31511 5.38875 5.46594 5.51758 6.11093 6.23882 6.71137 6.84522 7.29195 8.84367 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.029283 B = 0.006885 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.945948 B = 4065.833936 C = 4718.636287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.218 3.782 3 N -0.517 5.517 4 C 0.025 3.975 5 Cl -0.009 7.009 6 C -0.002 4.002 7 N -0.439 5.439 8 C 0.148 3.852 9 H 0.090 0.910 10 C -0.023 4.023 11 C -0.517 4.517 12 H 0.052 0.948 13 C 0.019 3.981 14 N -0.941 5.941 15 Si 0.929 3.071 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.240 1.240 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.043 4.043 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.103 0.897 25 H 0.050 0.950 26 H 0.013 0.987 27 H 0.267 0.733 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 9.554 3.712 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 N -0.240 5.240 4 C -0.129 4.129 5 Cl 0.019 6.981 6 C -0.120 4.120 7 N -0.121 5.121 8 C 0.047 3.953 9 H 0.108 0.892 10 C -0.061 4.061 11 C -0.555 4.555 12 H 0.070 0.930 13 C -0.179 4.179 14 N -0.582 5.582 15 Si 0.753 3.247 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.163 1.163 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.081 4.081 22 H 0.110 0.890 23 H 0.100 0.900 24 H 0.122 0.878 25 H 0.068 0.932 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.523 10.182 3.648 14.411 hybrid contribution -0.363 -0.537 -0.710 0.961 sum 9.161 9.645 2.938 13.623 Atomic orbital electron populations 1.20565 0.83293 1.05347 1.04061 1.23337 0.96567 0.80459 1.04130 1.70056 1.00966 1.29549 1.23391 1.20317 0.89166 0.88383 1.15075 1.98301 1.36172 1.65999 1.97595 1.21169 0.87473 0.93446 1.09885 1.45802 1.05654 1.08444 1.52220 1.21686 0.97107 0.75227 1.01250 0.89215 1.20075 0.94459 0.97158 0.94395 1.21058 1.17095 0.93815 1.23546 0.92997 1.25715 0.97427 0.96466 0.98290 1.70005 1.29584 1.17422 1.41140 0.85985 0.77893 0.81116 0.79658 1.20270 1.21070 1.16301 1.21802 0.93063 1.00200 1.00293 1.21695 0.97673 0.96304 0.99766 1.20413 0.91491 0.92029 1.04156 0.89033 0.90010 0.87828 0.93210 0.96904 0.92428 0.89740 0.92020 0.91381 0.88006 0.87534 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.20 8.76 71.24 0.62 -1.57 16 2 C 0.22 7.59 7.69 138.25 1.06 8.66 16 3 N -0.52 -18.96 11.27 -179.80 -2.03 -20.99 16 4 C 0.02 0.83 7.70 83.31 0.64 1.47 16 5 Cl -0.01 -0.24 29.19 -2.72 -0.08 -0.32 16 6 C 0.00 -0.06 6.58 40.72 0.27 0.20 16 7 N -0.44 -15.02 2.98 -477.75 -1.43 -16.45 16 8 C 0.15 5.22 3.00 45.09 0.14 5.35 16 9 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 10 C -0.02 -0.97 3.19 29.85 0.10 -0.87 16 11 C -0.52 -26.19 9.06 25.60 0.23 -25.96 16 12 H 0.05 2.84 7.22 -2.91 -0.02 2.82 16 13 C 0.02 1.04 5.47 84.65 0.46 1.50 16 14 N -0.94 -54.86 13.96 21.45 0.30 -54.56 16 15 Si 0.93 41.00 27.47 68.60 1.88 42.88 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.24 -9.53 6.44 99.48 0.64 -8.89 16 19 C -0.12 -3.61 4.84 30.73 0.15 -3.46 16 20 C -0.12 -2.71 5.95 30.80 0.18 -2.52 16 21 C -0.04 -1.00 6.19 30.01 0.19 -0.81 16 22 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.08 2.56 6.04 -2.39 -0.01 2.54 16 24 H 0.10 2.62 8.14 -2.39 -0.02 2.61 16 25 H 0.05 1.99 3.54 -2.39 -0.01 1.99 16 26 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 27 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.08 2.86 7.16 -2.39 -0.02 2.84 16 29 H 0.06 2.01 8.09 -2.39 -0.02 2.00 16 30 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -61.23 278.85 3.74 -57.49 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.05 Total: 9.96 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.04 Total: -18.02 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -3.15 Total: -91.99 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.88 Total: 42.88 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -61.23 3.74 -57.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.843 kcal (2) G-P(sol) polarization free energy of solvation -61.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds