Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47565 * 2 1 4 4 C 1.50700 * 109.47348 * 239.99377 * 2 1 3 5 5 H 1.08000 * 120.00182 * 245.60975 * 4 2 1 6 6 C 1.37882 * 119.99758 * 65.61215 * 4 2 1 7 7 N 1.31506 * 119.99937 * 197.62528 * 6 4 2 8 8 Si 1.86804 * 119.99989 * 17.34878 * 6 4 2 9 9 H 1.48497 * 109.46671 * 180.27749 * 8 6 4 10 10 H 1.48500 * 109.47051 * 300.27555 * 8 6 4 11 11 H 1.48500 * 109.47162 * 60.27630 * 8 6 4 12 12 C 1.50706 * 109.46906 * 119.99758 * 2 1 3 13 13 C 1.35462 * 126.05247 * 60.02346 * 12 2 1 14 14 Cl 1.73593 * 126.13977 * 0.02562 * 13 12 2 15 15 N 1.34987 * 107.71465 * 180.02562 * 13 12 2 16 16 C 1.46496 * 126.03293 * 179.97438 * 15 13 12 17 17 N 1.40083 * 107.92850 * 0.02562 * 15 13 12 18 18 C 1.30837 * 108.23834 * 359.71765 * 17 15 13 19 19 C 1.50697 * 125.88990 * 180.25507 * 18 17 15 20 20 C 1.52999 * 117.49823 * 8.96686 * 19 18 17 21 21 C 1.52997 * 117.49954 * 300.30224 * 19 18 17 22 22 H 1.09000 * 109.47338 * 186.19599 * 1 2 3 23 23 H 1.09005 * 109.47256 * 306.19957 * 1 2 3 24 24 H 1.09002 * 109.47146 * 66.19389 * 1 2 3 25 25 H 0.97002 * 119.99970 * 354.45938 * 7 6 4 26 26 H 1.09003 * 109.47304 * 89.99818 * 16 15 13 27 27 H 1.08998 * 109.47406 * 209.99979 * 16 15 13 28 28 H 1.08997 * 109.47086 * 330.00111 * 16 15 13 29 29 H 1.09004 * 115.54572 * 154.63470 * 19 18 17 30 30 H 1.08996 * 117.50254 * 359.97438 * 20 19 18 31 31 H 1.09003 * 117.49867 * 145.02430 * 20 19 18 32 32 H 1.08996 * 117.49805 * 214.97873 * 21 19 18 33 33 H 1.09001 * 117.50112 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5765 -1.6384 -1.1338 6 6 1.7973 -0.1759 -2.4794 7 7 1.9137 -0.9306 -3.5501 8 14 1.3059 1.6182 -2.6501 9 1 1.1062 1.9422 -4.0855 10 1 0.0422 1.8581 -1.9080 11 1 2.3787 2.4805 -2.0925 12 6 2.0322 -0.7104 1.2306 13 6 1.7820 -1.9990 1.5652 14 17 0.8270 -3.1264 0.6539 15 7 2.4087 -2.2488 2.7344 16 6 2.4029 -3.5212 3.4605 17 7 3.0644 -1.0763 3.1313 18 6 2.8430 -0.1571 2.2270 19 6 3.3678 1.2553 2.2559 20 6 4.4043 1.6019 3.3266 21 6 2.9729 2.1313 3.4465 22 1 -0.3634 -1.0216 0.1109 23 1 -0.3634 0.6070 0.8293 24 1 -0.3633 0.4148 -0.9402 25 1 2.2422 -1.8397 -3.4694 26 1 3.2409 -4.1335 3.1273 27 1 2.4953 -3.3298 4.5296 28 1 1.4684 -4.0469 3.2648 29 1 3.4658 1.7403 1.2847 30 1 4.7063 0.8086 4.0103 31 1 5.1840 2.3155 3.0600 32 1 2.8117 3.1928 3.2587 33 1 2.3332 1.6863 4.2086 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260991927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = 91.166872 kcal Electronic energy + Delta-G solvation = -16978.283570 eV Core-core repulsion = 14260.520961 eV Total energy + Delta-G solvation = -2717.762609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88080 -36.90046 -36.09470 -34.63690 -32.45278 -31.17103 -28.41231 -26.63549 -24.53295 -22.85031 -22.18944 -21.57632 -19.29859 -18.76482 -17.19820 -16.60934 -15.39206 -15.14215 -14.55703 -13.93945 -13.50888 -13.13517 -12.87468 -12.73730 -12.47441 -11.91894 -11.67603 -11.47173 -11.29700 -11.26556 -11.10527 -10.70160 -10.46231 -10.38620 -10.27995 -9.86416 -9.57821 -9.47619 -8.81021 -8.53056 -8.09928 -7.60143 -6.30108 -3.90495 2.08008 2.15651 3.10116 3.16009 3.46531 3.48964 3.67398 4.23804 4.58660 4.68205 4.90792 5.12822 5.23982 5.26967 5.38958 5.46452 5.48993 5.81279 5.96225 6.00375 6.10144 6.31232 6.34361 6.50775 6.60311 6.74708 6.91948 7.10092 7.21692 7.33221 7.60399 8.06603 8.25887 8.52199 9.05675 9.75679 11.07465 Molecular weight = 254.09amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.010466 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.793292 B = 2674.698456 C = 3878.151900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.030 0.970 4 C -0.578 4.578 5 H 0.057 0.943 6 C 0.030 3.970 7 N -0.911 5.911 8 Si 1.041 2.959 9 H -0.289 1.289 10 H -0.273 1.273 11 H -0.284 1.284 12 C -0.140 4.140 13 C 0.114 3.886 14 Cl -0.003 7.003 15 N -0.382 5.382 16 C 0.105 3.895 17 N -0.288 5.288 18 C 0.105 3.895 19 C -0.072 4.072 20 C -0.169 4.169 21 C -0.165 4.165 22 H 0.048 0.952 23 H 0.019 0.981 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 0.221 13.578 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.062 3.938 3 H 0.048 0.952 4 C -0.617 4.617 5 H 0.075 0.925 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.870 3.130 9 H -0.215 1.215 10 H -0.200 1.200 11 H -0.210 1.210 12 C -0.152 4.152 13 C -0.036 4.036 14 Cl 0.025 6.975 15 N -0.169 5.169 16 C -0.037 4.037 17 N -0.112 5.112 18 C -0.060 4.060 19 C -0.092 4.092 20 C -0.206 4.206 21 C -0.204 4.204 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.019 0.802 13.541 13.564 hybrid contribution 0.040 -1.476 0.277 1.502 sum 0.060 -0.674 13.818 13.834 Atomic orbital electron populations 1.22276 0.98448 1.00486 0.99397 1.17571 0.91774 0.94885 0.89616 0.95226 1.21908 1.39689 1.09629 0.90432 0.92495 1.25666 0.94899 1.04695 0.92184 1.70851 1.42329 1.09851 1.31565 0.84104 0.77188 0.75861 0.75805 1.21468 1.19959 1.21046 1.20032 1.03423 0.91846 0.99884 1.21241 1.00501 0.92821 0.89039 1.98365 1.68382 1.59714 1.71015 1.48236 1.40987 1.10473 1.17181 1.21736 1.03125 0.81346 0.97450 1.77181 1.19591 0.91264 1.23180 1.21099 0.97677 0.94341 0.92870 1.20301 1.03456 0.89487 0.95952 1.22958 0.92266 1.03383 1.02024 1.22976 0.98273 0.99137 0.99985 0.93264 0.96159 0.92662 0.92441 0.91099 0.89489 0.89887 0.85341 0.88348 0.88549 0.88332 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.79 37.15 0.33 -3.00 16 2 C 0.08 1.95 2.08 -92.92 -0.19 1.75 16 3 H 0.03 0.70 5.66 -51.93 -0.29 0.40 16 4 C -0.58 -15.91 8.06 -34.44 -0.28 -16.19 16 5 H 0.06 1.71 7.78 -52.49 -0.41 1.31 16 6 C 0.03 0.84 5.30 -17.82 -0.09 0.75 16 7 N -0.91 -27.83 13.69 55.43 0.76 -27.07 16 8 Si 1.04 24.96 26.29 -169.99 -4.47 20.49 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.27 -6.06 5.74 56.52 0.32 -5.73 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C -0.14 -3.10 4.80 -105.00 -0.50 -3.61 16 13 C 0.11 2.34 7.09 -17.15 -0.12 2.22 16 14 Cl 0.00 -0.05 25.86 -51.86 -1.34 -1.40 16 15 N -0.38 -6.94 4.01 -64.91 -0.26 -7.20 16 16 C 0.11 1.33 11.31 59.84 0.68 2.01 16 17 N -0.29 -5.51 12.15 33.67 0.41 -5.11 16 18 C 0.10 2.09 6.75 -82.41 -0.56 1.53 16 19 C -0.07 -1.21 5.86 -91.78 -0.54 -1.74 16 20 C -0.17 -2.30 10.14 -26.69 -0.27 -2.58 16 21 C -0.17 -2.24 10.24 -26.69 -0.27 -2.51 16 22 H 0.05 1.08 5.99 -51.93 -0.31 0.77 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 1.28 4.86 -51.93 -0.25 1.02 16 25 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.92 7.80 -51.93 -0.41 0.51 16 29 H 0.13 2.19 7.40 -51.93 -0.38 1.80 16 30 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 287.34 15.07 4.33 4.33 Total: -1.00 -31.37 287.34 -6.63 -38.00 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.23 Total: -0.68 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.82 Total: -21.37 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.91 Total: -39.37 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.47 Total: 20.49 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.34 Total: -1.40 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.37 -6.63 -38.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260991927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.165 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds